Wall clock time and date at job start Wed Apr 1 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.28372 * 2 1 4 4 O 1.21278 * 119.99824 * 237.88441 * 3 2 1 5 5 N 1.34774 * 119.99879 * 57.88438 * 3 2 1 6 6 C 1.46507 * 119.99589 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.68350 * 32.01691 * 6 5 3 8 8 C 1.55873 * 111.60239 * 269.01876 * 6 5 3 9 9 C 1.55849 * 103.52949 * 242.19618 * 8 6 5 10 10 H 1.08998 * 115.56396 * 158.20764 * 9 8 6 11 11 C 1.55841 * 105.73762 * 287.38784 * 9 8 6 12 12 C 1.55872 * 102.97598 * 71.13107 * 11 9 8 13 13 C 1.55837 * 103.52820 * 0.87997 * 12 11 9 14 14 H 1.09002 * 115.56222 * 158.20615 * 13 12 11 15 15 N 1.50237 * 101.05245 * 32.33422 * 13 12 11 16 16 C 1.36942 * 130.84274 * 126.05241 * 15 13 12 17 17 H 1.07997 * 119.99519 * 5.50619 * 16 15 13 18 18 C 1.38812 * 119.99950 * 185.51085 * 16 15 13 19 19 N 1.31617 * 120.00384 * 9.34370 * 18 16 15 20 20 Si 1.86803 * 119.99626 * 189.34194 * 18 16 15 21 21 H 1.48500 * 109.46985 * 94.01426 * 20 18 16 22 22 H 1.48504 * 109.46788 * 214.01321 * 20 18 16 23 23 H 1.48496 * 109.47172 * 334.01019 * 20 18 16 24 24 C 1.54171 * 110.40325 * 122.17069 * 2 1 3 25 25 C 1.53875 * 108.70135 * 91.03486 * 24 2 1 26 26 C 1.55050 * 106.62481 * 47.18251 * 25 24 2 27 27 S 1.82916 * 110.31955 * 237.88403 * 2 1 3 28 28 O 1.42103 * 109.35370 * 356.51933 * 27 2 1 29 29 O 1.42096 * 109.35700 * 129.72124 * 27 2 1 30 30 H 1.09008 * 109.47224 * 60.70047 * 1 2 3 31 31 H 1.08993 * 109.47636 * 180.70137 * 1 2 3 32 32 H 1.09003 * 109.47159 * 300.70804 * 1 2 3 33 33 H 0.97000 * 120.00529 * 0.02562 * 5 3 2 34 34 H 1.08998 * 111.10227 * 123.42889 * 8 6 5 35 35 H 1.09004 * 110.20738 * 0.52743 * 8 6 5 36 36 H 1.09000 * 110.62549 * 190.50208 * 11 9 8 37 37 H 1.09000 * 110.62606 * 313.51802 * 11 9 8 38 38 H 1.08997 * 111.10384 * 242.11379 * 12 11 9 39 39 H 1.09001 * 110.06817 * 119.15510 * 12 11 9 40 40 H 0.96995 * 120.00188 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.64761 * 210.88818 * 24 2 1 42 42 H 1.08997 * 109.64342 * 331.18928 * 24 2 1 43 43 H 1.09003 * 110.03071 * 287.89056 * 25 24 2 44 44 H 1.09001 * 110.02542 * 166.47328 * 25 24 2 45 45 H 1.09000 * 110.79169 * 199.29542 * 26 25 24 46 46 H 1.09005 * 110.79247 * 75.83180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4136 0.0000 4 8 2.7864 1.7887 -0.8896 5 7 1.7040 2.2607 0.9886 6 6 2.2124 3.6348 0.9888 7 1 2.3479 3.9953 -0.0309 8 6 3.5500 3.7516 1.7806 9 6 3.1997 4.7248 2.9464 10 1 3.8512 4.6678 3.8184 11 6 3.0693 6.1347 2.2954 12 6 1.7430 6.0242 1.4840 13 6 1.2539 4.5746 1.7806 14 1 0.1893 4.3970 1.6283 15 7 1.7561 4.3825 3.1834 16 6 1.1003 4.0097 4.3263 17 1 0.0623 3.7148 4.2814 18 6 1.7695 4.0109 5.5424 19 7 2.9708 4.5413 5.6320 20 14 0.9652 3.2599 7.0518 21 1 1.4002 1.8471 7.1932 22 1 1.3674 4.0249 8.2594 23 1 -0.5114 3.3107 6.9029 24 6 2.0675 -0.7694 1.2231 25 6 2.2641 -2.2442 0.8309 26 6 3.0141 -2.2461 -0.5262 27 16 2.1652 -0.9119 -1.4528 28 8 1.0737 -1.4627 -2.1772 29 8 3.1321 -0.1152 -2.1232 30 1 -0.3634 0.5029 -0.8963 31 1 -0.3634 -1.0275 0.0126 32 1 -0.3633 0.5248 0.8836 33 1 1.1172 1.9606 1.7003 34 1 4.3402 4.1688 1.1565 35 1 3.8437 2.7766 2.1695 36 1 3.0078 6.9073 3.0618 37 1 3.9052 6.3257 1.6224 38 1 1.9231 6.1580 0.4174 39 1 1.0204 6.7551 1.8471 40 1 3.4383 4.5425 6.4819 41 1 3.0208 -0.3427 1.5345 42 1 1.3522 -0.7004 2.0427 43 1 1.2964 -2.7342 0.7232 44 1 2.8597 -2.7554 1.5873 45 1 2.8960 -3.2043 -1.0322 46 1 4.0687 -2.0090 -0.3858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098013193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:01 Heat of formation + Delta-G solvation = -80.001655 kcal Electronic energy + Delta-G solvation = -29889.381666 eV Core-core repulsion = 25906.725479 eV Total energy + Delta-G solvation = -3982.656187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45380 -40.13901 -38.21523 -37.42263 -36.90031 -35.31028 -34.39225 -33.08747 -30.94197 -30.36503 -29.26077 -27.85986 -26.15577 -25.66355 -23.25592 -22.49082 -21.54631 -21.25969 -20.42795 -19.64255 -18.80956 -18.48097 -17.76632 -17.14447 -16.92793 -16.72571 -16.36356 -16.05705 -15.72858 -15.57151 -15.23265 -14.92953 -14.59691 -14.53951 -13.95230 -13.73679 -13.70729 -13.60565 -13.42038 -13.15778 -12.98561 -12.90534 -12.90269 -12.78119 -12.73888 -12.67647 -12.44032 -12.13087 -11.94110 -11.91645 -11.88224 -11.69445 -11.64632 -11.24747 -11.13134 -10.96704 -10.79130 -10.61509 -9.98405 -8.84857 -7.76518 -5.12962 -0.98678 1.48223 1.51056 1.52374 1.56702 1.60258 2.03884 2.52363 2.66285 3.05484 3.34213 3.38771 3.44908 3.52637 3.64938 3.70873 3.90737 4.00829 4.04619 4.13602 4.28598 4.41993 4.48372 4.52047 4.60064 4.61800 4.65482 4.66392 4.69532 4.83642 4.90120 4.98558 5.00574 5.04872 5.07628 5.15389 5.17270 5.19436 5.37467 5.52860 5.59122 5.69434 5.89502 6.23895 6.53536 7.05592 7.18376 7.73972 8.61020 9.33464 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.003928 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.578899 B = 7126.759516 C = 8241.457171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.550 4.550 3 C 0.530 3.470 4 O -0.552 6.552 5 N -0.687 5.687 6 C 0.137 3.863 7 H 0.084 0.916 8 C -0.135 4.135 9 C 0.145 3.855 10 H 0.108 0.892 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.128 3.872 14 H 0.103 0.897 15 N -0.607 5.607 16 C -0.214 4.214 17 H 0.087 0.913 18 C -0.064 4.064 19 N -0.946 5.946 20 Si 0.971 3.029 21 H -0.289 1.289 22 H -0.306 1.306 23 H -0.269 1.269 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.565 4.565 27 S 2.388 3.612 28 O -0.958 6.958 29 O -0.953 6.953 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.245 0.755 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.167 0.833 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 -13.832 -8.681 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.641 4.641 3 C 0.314 3.686 4 O -0.431 6.431 5 N -0.337 5.337 6 C 0.030 3.970 7 H 0.102 0.898 8 C -0.175 4.175 9 C 0.039 3.961 10 H 0.125 0.875 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.021 3.979 14 H 0.120 0.880 15 N -0.329 5.329 16 C -0.343 4.343 17 H 0.104 0.896 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.801 3.199 21 H -0.216 1.216 22 H -0.234 1.234 23 H -0.194 1.194 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.698 4.698 27 S 2.573 3.427 28 O -0.955 6.955 29 O -0.950 6.950 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.144 0.856 45 H 0.185 0.815 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.256 -13.382 -9.987 17.012 hybrid contribution -0.120 0.038 2.101 2.105 sum -3.376 -13.344 -7.886 15.864 Atomic orbital electron populations 1.21679 0.85902 1.06224 1.04494 1.30364 1.09195 1.03113 1.21429 1.19743 0.80523 0.86235 0.82121 1.90951 1.37311 1.77626 1.37186 1.45757 1.49873 1.11818 1.26257 1.22584 0.94543 0.81295 0.98560 0.89812 1.23495 0.96439 0.99726 0.97834 1.23368 0.87102 0.90954 0.94705 0.87480 1.23082 0.97291 0.98560 0.97923 1.23010 0.97110 0.96733 0.99275 1.23316 0.96397 0.93393 0.84779 0.87953 1.46727 1.04858 1.78281 1.03025 1.19342 0.95211 1.35121 0.84603 0.89552 1.25406 0.97813 1.02698 0.99779 1.69845 1.15016 1.50369 1.24337 0.85160 0.78055 0.77502 0.79168 1.21618 1.23354 1.19398 1.22213 1.03490 0.94082 0.94938 1.22340 1.02910 0.95133 0.94759 1.30575 1.12413 1.16581 1.10274 1.09297 0.76576 0.78812 0.78065 1.93552 1.54639 1.78326 1.69024 1.93636 1.60759 1.68564 1.72048 0.91999 0.87370 0.88890 0.75344 0.91575 0.93897 0.94417 0.91489 0.90220 0.92481 0.94596 0.90479 0.86196 0.86791 0.85628 0.81519 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.77 71.98 0.56 -1.57 16 2 C -0.55 -11.76 0.93 -11.14 -0.01 -11.77 16 3 C 0.53 16.30 6.40 87.66 0.56 16.87 16 4 O -0.55 -21.90 13.62 20.04 0.27 -21.63 16 5 N -0.69 -20.99 5.01 -433.22 -2.17 -23.16 16 6 C 0.14 4.75 2.84 46.97 0.13 4.88 16 7 H 0.08 2.94 7.26 -2.39 -0.02 2.93 16 8 C -0.13 -5.21 6.30 32.57 0.21 -5.01 16 9 C 0.15 6.44 4.62 46.23 0.21 6.65 16 10 H 0.11 5.63 5.73 -2.39 -0.01 5.61 16 11 C -0.13 -5.01 6.53 32.57 0.21 -4.80 16 12 C -0.12 -4.14 6.48 32.57 0.21 -3.92 16 13 C 0.13 4.59 5.01 46.22 0.23 4.82 16 14 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 15 N -0.61 -27.14 2.97 -615.25 -1.83 -28.97 16 16 C -0.21 -10.55 10.56 84.03 0.89 -9.66 16 17 H 0.09 4.00 7.85 -2.91 -0.02 3.98 16 18 C -0.06 -3.32 5.47 84.86 0.46 -2.85 16 19 N -0.95 -52.87 10.64 21.65 0.23 -52.64 16 20 Si 0.97 42.24 29.56 68.60 2.03 44.27 16 21 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.31 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 C -0.11 -1.63 5.44 31.29 0.17 -1.46 16 25 C -0.11 -0.99 6.48 31.59 0.20 -0.79 16 26 C -0.56 -6.75 7.31 72.68 0.53 -6.22 16 27 S 2.39 56.16 5.77 -56.49 -0.33 55.84 16 28 O -0.96 -25.60 17.24 -127.49 -2.20 -27.79 16 29 O -0.95 -33.30 15.27 -118.44 -1.81 -35.11 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.09 1.37 7.50 -2.39 -0.02 1.35 16 33 H 0.41 11.46 8.00 -92.71 -0.74 10.72 16 34 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 35 H 0.04 1.75 8.01 -2.39 -0.02 1.74 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.29 7.85 -2.39 -0.02 2.27 16 38 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 41 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 42 H 0.12 1.43 7.88 -2.39 -0.02 1.42 16 43 H 0.11 0.51 8.14 -2.39 -0.02 0.50 16 44 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.15 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -76.33 368.73 -0.97 -77.30 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.25 Total: 26.73 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.58 Total: -14.83 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -3.77 Total: -104.77 kcal Atomic # 8 Polarization: -80.80 SS G_CDS: -3.73 Total: -84.53 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.33 Total: 55.84 kcal Total: -76.33 -0.97 -77.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098013193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.701 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds