Wall clock time and date at job start Wed Apr 1 2020 00:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.28453 * 2 1 4 4 O 1.21280 * 119.99881 * 252.88183 * 3 2 1 5 5 N 1.34773 * 120.00024 * 72.87939 * 3 2 1 6 6 C 1.46501 * 120.00030 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.55699 * 32.09579 * 6 5 3 8 8 C 1.54855 * 110.62859 * 269.02937 * 6 5 3 9 9 C 1.55847 * 103.44637 * 241.51063 * 8 6 5 10 10 H 1.08995 * 115.56394 * 159.56044 * 9 8 6 11 11 C 1.55844 * 105.06199 * 288.17170 * 9 8 6 12 12 C 1.54858 * 103.44482 * 71.82277 * 11 9 8 13 13 C 1.55838 * 103.44606 * 0.02562 * 12 11 9 14 14 H 1.09002 * 115.56163 * 159.56761 * 13 12 11 15 15 N 1.50236 * 101.05071 * 32.93548 * 13 12 11 16 16 C 1.36937 * 130.83539 * 125.99764 * 15 13 12 17 17 H 1.08003 * 120.00426 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99987 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99701 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99929 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47459 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47059 * 119.99870 * 20 18 16 23 23 H 1.48504 * 109.46893 * 239.99801 * 20 18 16 24 24 C 1.54163 * 110.32071 * 237.88009 * 2 1 3 25 25 C 1.53879 * 108.59445 * 213.25720 * 24 2 1 26 26 C 1.54735 * 106.77771 * 47.21091 * 25 24 2 27 27 S 1.82923 * 110.31718 * 122.21823 * 2 1 3 28 28 O 1.42095 * 109.35457 * 234.43040 * 27 2 1 29 29 O 1.42104 * 109.35176 * 7.62864 * 27 2 1 30 30 H 1.08997 * 109.46967 * 182.11751 * 1 2 3 31 31 H 1.08990 * 109.47306 * 302.12058 * 1 2 3 32 32 H 1.09002 * 109.46537 * 62.12157 * 1 2 3 33 33 H 0.97001 * 120.00530 * 0.02562 * 5 3 2 34 34 H 1.09005 * 110.62046 * 359.97438 * 8 6 5 35 35 H 1.08996 * 110.62924 * 123.01691 * 8 6 5 36 36 H 1.09001 * 110.62529 * 313.33571 * 11 9 8 37 37 H 1.08994 * 110.76521 * 190.37755 * 11 9 8 38 38 H 1.09003 * 110.62221 * 241.50897 * 12 11 9 39 39 H 1.09004 * 110.76120 * 118.55881 * 12 11 9 40 40 H 0.97002 * 119.99863 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.64767 * 333.04462 * 24 2 1 42 42 H 1.09006 * 109.64463 * 93.47282 * 24 2 1 43 43 H 1.09004 * 110.02679 * 166.41190 * 25 24 2 44 44 H 1.09004 * 110.02622 * 287.82518 * 25 24 2 45 45 H 1.09006 * 110.80737 * 199.26379 * 26 25 24 46 46 H 1.09004 * 110.98349 * 75.84558 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 8 2.5527 1.8751 -1.0038 5 7 1.9638 2.1647 1.1154 6 6 2.4712 3.5391 1.1153 7 1 2.3561 3.9894 0.1294 8 6 3.9526 3.5738 1.5650 9 6 3.9187 4.4438 2.8575 10 1 4.7688 4.3223 3.5287 11 6 3.6568 5.8975 2.3604 12 6 2.1754 5.8628 1.9107 13 6 1.7438 4.3932 2.1979 14 1 0.6701 4.2268 2.2850 15 7 2.5702 4.0827 3.4135 16 6 2.2063 3.6151 4.6480 17 1 1.1679 3.4105 4.8635 18 6 3.1719 3.4050 5.6230 19 7 4.4371 3.6557 5.3609 20 14 2.6755 2.7664 7.3068 21 1 1.2046 2.5661 7.3465 22 1 3.3588 1.4738 7.5671 23 1 3.0686 3.7522 8.3456 24 6 2.0654 -0.7687 -1.2244 25 6 3.3795 -1.4655 -0.8301 26 6 3.1222 -2.1718 0.5224 27 16 2.1652 -0.9146 1.4513 28 8 3.0600 -0.0831 2.1772 29 8 1.0825 -1.5466 2.1204 30 1 -0.3633 -1.0269 0.0380 31 1 -0.3633 0.5464 0.8703 32 1 -0.3632 0.4806 -0.9084 33 1 1.5641 1.7955 1.9184 34 1 4.3096 2.5684 1.7885 35 1 4.5745 4.0428 0.8025 36 1 4.3077 6.1390 1.5201 37 1 3.7956 6.6136 3.1702 38 1 2.0917 6.0872 0.8473 39 1 1.5771 6.5600 2.4973 40 1 5.1119 3.5086 6.0420 41 1 1.3346 -1.5145 -1.5372 42 1 2.2510 -0.0720 -2.0420 43 1 3.6533 -2.2013 -1.5863 44 1 4.1749 -0.7282 -0.7210 45 1 4.0619 -2.3941 1.0281 46 1 2.5354 -3.0798 0.3832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098013194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:07 Heat of formation + Delta-G solvation = -79.725992 kcal Electronic energy + Delta-G solvation = -30490.722904 eV Core-core repulsion = 26508.078670 eV Total energy + Delta-G solvation = -3982.644234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -41.53260 -40.23604 -38.24535 -37.37183 -37.04769 -35.43063 -34.47350 -33.28777 -30.97084 -30.40681 -29.35787 -27.87171 -26.20718 -25.42913 -23.49987 -22.23875 -21.58781 -21.48373 -20.39826 -19.75721 -18.91264 -18.86701 -17.77135 -17.27792 -16.81393 -16.77967 -16.64382 -15.86666 -15.82399 -15.50819 -15.21651 -15.15331 -14.67320 -14.57033 -14.08103 -13.76143 -13.73749 -13.61802 -13.50174 -13.20221 -13.10411 -12.93044 -12.90291 -12.82228 -12.77518 -12.68178 -12.47224 -12.10195 -11.94865 -11.93458 -11.88931 -11.71186 -11.68229 -11.35013 -11.10521 -10.94573 -10.92800 -10.67863 -10.02386 -8.85503 -7.76062 -5.14592 -1.14663 1.29510 1.43731 1.46066 1.53979 1.58895 1.98597 2.48267 2.49165 2.87709 3.22452 3.37406 3.43801 3.51257 3.54291 3.68243 3.92569 4.01234 4.07974 4.10898 4.25991 4.46341 4.49003 4.49706 4.57514 4.58679 4.61218 4.66653 4.69579 4.82647 4.90327 4.94052 5.04210 5.05857 5.08948 5.12184 5.17282 5.21441 5.38371 5.49876 5.55341 5.72673 5.91397 6.27485 6.42797 7.01734 7.06860 7.72962 8.58568 9.31977 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.005164 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.051756 B = 5420.585745 C = 6737.287165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.542 4.542 3 C 0.539 3.461 4 O -0.553 6.553 5 N -0.700 5.700 6 C 0.137 3.863 7 H 0.099 0.901 8 C -0.137 4.137 9 C 0.141 3.859 10 H 0.111 0.889 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.121 3.879 14 H 0.101 0.899 15 N -0.609 5.609 16 C -0.215 4.215 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.945 5.945 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.300 1.300 23 H -0.291 1.291 24 C -0.099 4.099 25 C -0.124 4.124 26 C -0.554 4.554 27 S 2.346 3.654 28 O -0.961 6.961 29 O -0.955 6.955 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.395 0.605 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.244 0.756 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.141 0.859 44 H 0.068 0.932 45 H 0.151 0.849 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 -10.755 -16.986 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.635 4.635 3 C 0.324 3.676 4 O -0.432 6.432 5 N -0.348 5.348 6 C 0.031 3.969 7 H 0.117 0.883 8 C -0.177 4.177 9 C 0.034 3.966 10 H 0.129 0.871 11 C -0.169 4.169 12 C -0.155 4.155 13 C 0.014 3.986 14 H 0.119 0.881 15 N -0.330 5.330 16 C -0.344 4.344 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.595 5.595 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.228 1.228 23 H -0.218 1.218 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.688 4.688 27 S 2.533 3.467 28 O -0.958 6.958 29 O -0.952 6.952 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.229 0.771 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.159 0.841 44 H 0.087 0.913 45 H 0.169 0.831 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.047 -10.312 -16.374 20.273 hybrid contribution 0.222 -0.346 1.203 1.271 sum -5.824 -10.658 -15.171 19.434 Atomic orbital electron populations 1.21655 0.85363 1.06255 1.04825 1.30227 1.09139 1.03265 1.20861 1.19504 0.78466 0.86331 0.83320 1.90612 1.46053 1.73078 1.33430 1.46071 1.60403 1.15079 1.13233 1.22604 0.94048 0.80856 0.99400 0.88310 1.23357 0.95955 0.99887 0.98528 1.23523 0.90660 0.91137 0.91234 0.87146 1.22949 0.96827 0.97940 0.99222 1.22815 0.96032 0.95839 1.00838 1.23435 0.95232 0.94176 0.85802 0.88060 1.46668 1.03354 1.74646 1.08365 1.19348 0.93100 1.34250 0.87676 0.90032 1.25415 0.95525 1.03555 1.01524 1.69747 1.00264 1.56095 1.33395 0.85173 0.77831 0.76941 0.80486 1.18988 1.22823 1.21828 1.22220 0.97509 0.99571 0.94424 1.22308 0.97991 1.00453 0.95466 1.30446 1.14843 1.14043 1.09490 1.10474 0.77436 0.79867 0.78930 1.93742 1.64816 1.67505 1.69754 1.93560 1.54619 1.75141 1.71922 0.87197 0.92046 0.88413 0.77077 0.94625 0.91104 0.90806 0.94271 0.89575 0.92047 0.94593 0.84992 0.87761 0.84080 0.91271 0.83125 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 7.94 71.98 0.57 -1.64 16 2 C -0.54 -12.30 0.95 -11.15 -0.01 -12.31 16 3 C 0.54 17.20 6.27 87.66 0.55 17.75 16 4 O -0.55 -19.54 15.14 -3.03 -0.05 -19.59 16 5 N -0.70 -25.62 4.23 -434.82 -1.84 -27.46 16 6 C 0.14 5.21 2.81 46.63 0.13 5.34 16 7 H 0.10 3.45 7.23 -2.39 -0.02 3.43 16 8 C -0.14 -5.97 6.23 32.21 0.20 -5.77 16 9 C 0.14 6.86 4.69 46.22 0.22 7.08 16 10 H 0.11 6.36 5.58 -2.39 -0.01 6.34 16 11 C -0.13 -5.17 6.44 32.21 0.21 -4.96 16 12 C -0.12 -4.01 6.44 32.21 0.21 -3.80 16 13 C 0.12 4.75 5.06 46.25 0.23 4.99 16 14 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 15 N -0.61 -30.67 2.99 -615.07 -1.84 -32.51 16 16 C -0.21 -12.07 10.59 84.03 0.89 -11.18 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.95 -58.04 10.48 21.65 0.23 -57.81 16 20 Si 0.97 47.71 29.55 68.60 2.03 49.74 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 C -0.10 -1.45 5.36 31.28 0.17 -1.29 16 25 C -0.12 -1.65 6.45 31.48 0.20 -1.45 16 26 C -0.55 -8.00 7.30 72.57 0.53 -7.47 16 27 S 2.35 63.15 5.45 -56.49 -0.31 62.84 16 28 O -0.96 -38.15 15.97 -127.49 -2.04 -40.19 16 29 O -0.96 -29.27 17.15 -127.49 -2.19 -31.45 16 30 H 0.11 1.41 7.93 -2.39 -0.02 1.39 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.40 15.29 7.57 -92.71 -0.70 14.59 16 34 H 0.03 1.78 7.98 -2.38 -0.02 1.76 16 35 H 0.07 2.75 7.82 -2.39 -0.02 2.73 16 36 H 0.07 2.52 7.82 -2.39 -0.02 2.50 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 2.42 7.82 -2.39 -0.02 2.40 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.13 0.85 7.86 -2.39 -0.02 0.83 16 42 H 0.10 1.82 6.85 -2.38 -0.02 1.81 16 43 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.15 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.18 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -81.68 368.14 -1.14 -82.82 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.29 Total: 31.79 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.56 Total: -18.18 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -3.45 Total: -117.78 kcal Atomic # 8 Polarization: -86.96 SS G_CDS: -4.27 Total: -91.23 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Atomic # 16 Polarization: 63.15 SS G_CDS: -0.31 Total: 62.84 kcal Total: -81.68 -1.14 -82.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098013194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.095 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds