Wall clock time and date at job start Wed Apr 1 2020 00:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99707 * 2 1 4 4 O 1.20826 * 119.99991 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99956 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47050 * 299.99933 * 5 3 2 7 7 N 1.46506 * 109.47485 * 180.02562 * 5 3 2 8 8 C 1.38362 * 119.99857 * 84.99513 * 7 5 3 9 9 C 1.39702 * 119.43612 * 359.97438 * 8 7 5 10 10 C 1.36559 * 119.49641 * 179.97438 * 9 8 7 11 11 C 1.41319 * 118.41126 * 0.03924 * 10 9 8 12 12 C 1.41203 * 120.57395 * 180.25286 * 11 10 9 13 13 H 1.07996 * 119.99826 * 154.59972 * 12 11 10 14 14 C 1.39873 * 119.99948 * 334.60276 * 12 11 10 15 15 N 1.30906 * 119.99751 * 344.00717 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 164.00571 * 14 12 11 17 17 H 1.48493 * 109.46901 * 89.99810 * 16 14 12 18 18 H 1.48498 * 109.47146 * 210.00164 * 16 14 12 19 19 H 1.48509 * 109.46885 * 330.00149 * 16 14 12 20 20 C 1.40764 * 118.85642 * 359.97438 * 11 10 9 21 21 C 1.50695 * 119.81468 * 179.97438 * 20 11 10 22 22 N 1.31478 * 120.36985 * 359.97438 * 20 11 10 23 23 C 1.50699 * 109.47321 * 60.00034 * 5 3 2 24 24 C 1.38268 * 119.94371 * 79.72968 * 23 5 3 25 25 C 1.38141 * 120.05537 * 179.72777 * 24 23 5 26 26 C 1.38725 * 119.94499 * 0.54209 * 25 24 23 27 27 O 1.35904 * 120.05887 * 179.74876 * 26 25 24 28 28 C 1.38731 * 119.88845 * 359.73152 * 26 25 24 29 29 C 1.38143 * 119.94441 * 359.97438 * 28 26 25 30 30 H 1.08993 * 109.47313 * 299.99366 * 1 2 3 31 31 H 1.08999 * 109.47367 * 60.00032 * 1 2 3 32 32 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99411 * 265.00167 * 7 5 3 34 34 H 1.08005 * 120.25370 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.79436 * 180.02562 * 10 9 8 36 36 H 0.96996 * 119.99679 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.47736 * 89.99715 * 21 20 11 38 38 H 1.09001 * 109.47456 * 210.00174 * 21 20 11 39 39 H 1.09002 * 109.47551 * 329.99680 * 21 20 11 40 40 H 1.08006 * 119.96918 * 359.97438 * 24 23 5 41 41 H 1.08005 * 120.02720 * 180.26973 * 25 24 23 42 42 H 0.96698 * 113.99570 * 269.97996 * 27 26 25 43 43 H 1.08004 * 120.02994 * 179.97438 * 28 26 25 44 44 H 1.08006 * 119.97065 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 7 3.9816 2.6799 0.0002 8 6 4.0780 3.3721 1.1943 9 6 3.7759 2.7200 2.3922 10 6 3.8712 3.4019 3.5716 11 6 4.2751 4.7556 3.5348 12 6 4.3940 5.5023 4.7273 13 1 5.0613 6.3504 4.7691 14 6 3.6475 5.1435 5.8544 15 7 2.6246 4.3358 5.7321 16 14 4.1102 5.8169 7.5343 17 1 3.3902 7.0939 7.7710 18 1 3.7335 4.8346 8.5822 19 1 5.5747 6.0576 7.5848 20 6 4.5627 5.3452 2.2893 21 6 4.9947 6.7874 2.2249 22 7 4.4565 4.6445 1.1818 23 6 4.1046 0.5921 -1.2314 24 6 4.0982 1.2530 -2.4459 25 6 4.5963 0.6313 -3.5744 26 6 5.0930 -0.6613 -3.4908 27 8 5.5789 -1.2770 -4.6007 28 6 5.0931 -1.3244 -2.2722 29 6 4.5994 -0.6961 -1.1453 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.1889 3.1246 -0.8365 34 1 3.4694 1.6844 2.3858 35 1 3.6431 2.9183 4.5099 36 1 2.1072 4.0867 6.5138 37 1 6.0807 6.8452 2.2988 38 1 4.6713 7.2218 1.2790 39 1 4.5446 7.3388 3.0505 40 1 3.7070 2.2576 -2.5114 41 1 4.5951 1.1496 -4.5220 42 1 4.9150 -1.7758 -5.0962 43 1 5.4788 -2.3309 -2.2046 44 1 4.5997 -1.2118 -0.1963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155732510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:20 Heat of formation + Delta-G solvation = -59.294801 kcal Electronic energy + Delta-G solvation = -29223.577259 eV Core-core repulsion = 25106.375037 eV Total energy + Delta-G solvation = -4117.202222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.69248 -39.69215 -38.66681 -37.34867 -36.33458 -35.09359 -33.67695 -31.60615 -31.27884 -30.83239 -29.37833 -28.11765 -26.91150 -25.95965 -24.34282 -22.98986 -22.33015 -21.26319 -21.08372 -19.68452 -18.66434 -17.62265 -17.28787 -17.20128 -16.60798 -16.05947 -15.97702 -15.67900 -15.23513 -15.07677 -14.79031 -14.03079 -13.79305 -13.72501 -13.56180 -13.44068 -13.16752 -12.84250 -12.53144 -12.45255 -12.21194 -11.97917 -11.84828 -11.65596 -11.54882 -11.43790 -11.27083 -11.13647 -10.83183 -10.67718 -10.65106 -10.58709 -10.41799 -9.73936 -9.42282 -9.18735 -8.84420 -8.69353 -8.18716 -8.03178 -6.87531 -6.64043 -4.20752 0.92633 1.15745 2.41915 2.61480 2.82060 2.96595 3.08099 3.12799 3.30445 3.35770 3.93985 3.95535 4.02895 4.46369 4.65715 4.68619 4.76280 5.02494 5.14158 5.15388 5.19589 5.24389 5.41021 5.54941 5.57480 5.67531 5.79833 5.93848 6.02210 6.19581 6.29198 6.34193 6.43522 6.46246 6.50732 6.56960 6.69846 6.80837 7.04024 7.20091 7.30933 7.38747 7.43002 7.63754 7.87703 7.97458 8.17449 8.35179 8.57503 8.83209 8.87592 9.69462 10.22629 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.002825 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.773041 B = 9909.151332 C =10707.426501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.436 3.564 4 O -0.479 6.479 5 C 0.226 3.774 6 H 0.122 0.878 7 N -0.712 5.712 8 C 0.282 3.718 9 C -0.204 4.204 10 C -0.091 4.091 11 C 0.038 3.962 12 C -0.451 4.451 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.804 5.804 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.261 1.261 20 C 0.038 3.962 21 C -0.070 4.070 22 N -0.511 5.511 23 C -0.093 4.093 24 C -0.088 4.088 25 C -0.142 4.142 26 C 0.107 3.893 27 O -0.500 6.500 28 C -0.143 4.143 29 C -0.075 4.075 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.279 0.721 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.389 0.611 43 H 0.132 0.868 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -12.825 -12.704 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.274 3.726 4 O -0.363 6.363 5 C 0.115 3.885 6 H 0.139 0.861 7 N -0.351 5.351 8 C 0.051 3.949 9 C -0.227 4.227 10 C -0.118 4.118 11 C 0.033 3.967 12 C -0.482 4.482 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.430 5.430 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.101 4.101 21 C -0.128 4.128 22 N -0.226 5.226 23 C -0.094 4.094 24 C -0.106 4.106 25 C -0.161 4.161 26 C 0.062 3.938 27 O -0.310 6.310 28 C -0.162 4.162 29 C -0.094 4.094 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.245 0.755 43 H 0.150 0.850 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.113 -12.058 -13.040 17.761 hybrid contribution -0.947 -0.212 1.160 1.512 sum -1.060 -12.270 -11.881 17.112 Atomic orbital electron populations 1.23198 0.77104 1.03157 1.02471 1.86515 1.22881 1.33972 1.84507 1.25060 0.92980 0.81551 0.73016 1.90703 1.66309 1.36276 1.43048 1.18852 0.85939 0.85523 0.98206 0.86077 1.43341 1.76674 1.08058 1.06996 1.17477 1.03348 0.89592 0.84529 1.20719 1.09802 0.99062 0.93144 1.21249 1.00010 0.93956 0.96578 1.18175 0.93387 0.92177 0.92925 1.19355 1.21770 1.12610 0.94438 0.90082 1.25889 0.93301 0.94076 1.01094 1.69825 1.12771 1.28582 1.31850 0.86326 0.80207 0.79249 0.81032 1.19567 1.20257 1.18495 1.20735 1.07053 0.95001 0.87355 1.20251 0.99417 0.92104 1.01001 1.66230 1.18019 1.05594 1.32804 1.19580 1.01072 0.95079 0.93666 1.20914 0.98161 0.99985 0.91543 1.21360 0.99923 0.95348 0.99428 1.18513 0.96622 0.91861 0.86779 1.84829 1.38692 1.69348 1.38161 1.21371 1.01606 1.00843 0.92356 1.20891 0.96147 0.93479 0.98854 0.91882 0.92329 0.88453 0.76776 0.89129 0.85429 0.91011 0.93342 0.93360 0.91308 0.85276 0.85164 0.75472 0.85041 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.13 10.48 -39.25 -0.41 -5.54 16 3 C 0.44 7.34 7.08 36.00 0.25 7.60 16 4 O -0.48 -9.92 16.10 -18.75 -0.30 -10.22 16 5 C 0.23 3.50 2.37 -70.23 -0.17 3.34 16 6 H 0.12 1.81 6.27 -51.93 -0.33 1.48 16 7 N -0.71 -13.31 4.69 -56.13 -0.26 -13.57 16 8 C 0.28 6.53 7.52 -155.12 -1.17 5.37 16 9 C -0.20 -4.81 9.06 -39.64 -0.36 -5.17 16 10 C -0.09 -2.37 8.74 -39.02 -0.34 -2.71 16 11 C 0.04 1.02 5.58 -106.65 -0.59 0.43 16 12 C -0.45 -11.70 8.14 -37.85 -0.31 -12.01 16 13 H 0.08 2.00 6.87 -52.49 -0.36 1.64 16 14 C 0.07 1.81 5.19 -17.33 -0.09 1.72 16 15 N -0.80 -20.75 10.94 55.54 0.61 -20.14 16 16 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 C 0.04 0.95 6.86 -81.79 -0.56 0.39 16 21 C -0.07 -1.51 9.57 36.00 0.34 -1.16 16 22 N -0.51 -12.70 10.29 -8.05 -0.08 -12.78 16 23 C -0.09 -1.18 4.88 -104.60 -0.51 -1.69 16 24 C -0.09 -1.05 9.04 -39.61 -0.36 -1.41 16 25 C -0.14 -1.50 9.99 -39.44 -0.39 -1.89 16 26 C 0.11 1.08 6.70 -39.22 -0.26 0.82 16 27 O -0.50 -4.36 13.50 -19.44 -0.26 -4.62 16 28 C -0.14 -1.40 9.99 -39.43 -0.39 -1.79 16 29 C -0.08 -0.80 9.66 -39.61 -0.38 -1.19 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 6.99 7.00 -40.82 -0.29 6.71 16 34 H 0.09 1.90 6.10 -52.48 -0.32 1.58 16 35 H 0.13 3.37 6.25 -52.49 -0.33 3.04 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.45 6.77 -51.93 -0.35 1.10 16 40 H 0.13 1.56 6.93 -52.48 -0.36 1.19 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.39 1.44 9.06 45.56 0.41 1.85 16 43 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.13 1.19 8.03 -52.48 -0.42 0.77 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -33.03 376.22 -8.73 -41.76 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -4.44 Total: 13.83 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.22 Total: -7.90 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.26 Total: -46.50 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.98 Total: -20.37 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.03 -8.73 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155732510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.534 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds