Wall clock time and date at job start Wed Apr 1 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47411 * 233.35235 * 3 2 1 5 5 C 1.52988 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47262 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47541 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47573 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.64235 * 304.73584 * 11 10 9 13 13 C 1.52708 * 109.62770 * 184.56388 * 11 10 9 14 14 N 1.46388 * 109.77072 * 182.00679 * 13 11 10 15 15 C 1.36931 * 119.69547 * 244.31119 * 14 13 11 16 16 H 1.08000 * 120.00262 * 331.36968 * 15 14 13 17 17 C 1.38813 * 119.99851 * 151.37044 * 15 14 13 18 18 N 1.31618 * 120.00318 * 340.81284 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 160.54459 * 17 15 14 20 20 H 1.48506 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47410 * 119.99543 * 19 17 15 22 22 H 1.48505 * 109.47191 * 240.00036 * 19 17 15 23 23 C 1.46383 * 120.60099 * 64.03412 * 14 13 11 24 24 C 1.53190 * 109.50944 * 295.95833 * 23 14 13 25 25 S 1.81661 * 109.55526 * 64.99933 * 11 10 9 26 26 O 1.42105 * 108.65263 * 61.06051 * 25 11 10 27 27 O 1.42102 * 108.65435 * 289.75417 * 25 11 10 28 28 H 4.44653 * 5.63250 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47095 * 113.35016 * 3 2 1 30 30 H 1.09003 * 109.46958 * 353.35721 * 3 2 1 31 31 H 1.09003 * 109.46687 * 59.99772 * 4 3 2 32 32 H 1.09001 * 109.46944 * 300.00180 * 4 3 2 33 33 H 1.09003 * 109.47319 * 60.00346 * 5 4 3 34 34 H 1.09001 * 109.47458 * 300.00053 * 5 4 3 35 35 H 0.96997 * 119.99989 * 0.02562 * 8 6 5 36 36 H 1.09003 * 109.46704 * 59.99781 * 9 8 6 37 37 H 1.09001 * 109.46959 * 300.00169 * 9 8 6 38 38 H 1.09003 * 109.47115 * 60.00260 * 10 9 8 39 39 H 1.09001 * 109.47318 * 300.00177 * 10 9 8 40 40 H 1.08994 * 109.33747 * 61.90940 * 13 11 10 41 41 H 1.09000 * 109.32539 * 302.09455 * 13 11 10 42 42 H 0.96990 * 120.00465 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46615 * 55.97074 * 23 14 13 44 44 H 1.09004 * 109.46644 * 175.94660 * 23 14 13 45 45 H 1.08998 * 109.55450 * 178.10003 * 24 23 14 46 46 H 1.09001 * 109.55558 * 298.31096 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8619 1.1573 5 6 4.6855 0.8620 1.1577 6 6 5.1876 1.7098 2.2980 7 8 4.3992 2.2601 3.0373 8 7 6.5126 1.8573 2.4957 9 6 7.0006 2.6819 3.6039 10 6 8.5305 2.6820 3.6044 11 6 9.0402 3.5437 4.7613 12 1 8.6108 4.5432 4.6907 13 6 10.5630 3.6389 4.6979 14 7 11.0577 4.4231 5.8308 15 6 11.6904 5.6163 5.6051 16 1 12.2303 5.7754 4.6834 17 6 11.6378 6.6214 6.5611 18 7 10.7038 6.5998 7.4882 19 14 12.8972 8.0008 6.5363 20 1 13.8376 7.7924 5.4059 21 1 12.2024 9.3025 6.3690 22 1 13.6533 8.0038 7.8144 23 6 10.8768 3.9461 7.2028 24 6 9.3816 3.8863 7.5307 25 16 8.5604 2.7860 6.3411 26 8 9.1557 1.4986 6.4271 27 8 7.1540 2.9152 6.4986 28 1 -1.0501 0.0000 -0.0004 29 1 3.0091 0.4082 -0.9436 30 1 3.0098 -1.0200 0.1189 31 1 2.7925 0.4543 2.1008 32 1 2.7919 1.8825 1.0384 33 1 5.0491 1.2693 0.2142 34 1 5.0490 -0.1587 1.2769 35 1 7.1431 1.4181 1.9038 36 1 6.6373 2.2744 4.5473 37 1 6.6368 3.7026 3.4849 38 1 8.8941 3.0893 2.6609 39 1 8.8939 1.6613 3.7236 40 1 10.8559 4.1223 3.7660 41 1 10.9890 2.6364 4.7365 42 1 10.6669 7.3023 8.1559 43 1 11.3104 2.9510 7.3016 44 1 11.3730 4.6285 7.8930 45 1 9.2448 3.4993 8.5405 46 1 8.9527 4.8860 7.4618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230454793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:52 Heat of formation + Delta-G solvation = -46.006761 kcal Electronic energy + Delta-G solvation = -27702.716703 eV Core-core repulsion = 23721.534644 eV Total energy + Delta-G solvation = -3981.182058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.80736 -37.30832 -36.48446 -36.02049 -35.62380 -35.24510 -33.33711 -32.52004 -31.58049 -29.98062 -28.67146 -27.23020 -24.43918 -23.58061 -22.37291 -21.83305 -20.68299 -20.31621 -18.51485 -18.25632 -17.25319 -16.91526 -16.64892 -16.15068 -16.07507 -15.56264 -15.12634 -14.90174 -14.83742 -14.45731 -14.06153 -13.87335 -13.75649 -13.63535 -13.43294 -12.86054 -12.72593 -12.45178 -12.20562 -12.12124 -11.83972 -11.68172 -11.52618 -11.46341 -11.39849 -11.27589 -11.18873 -11.06314 -10.94009 -10.78898 -10.50004 -10.36970 -10.29613 -10.16978 -9.88539 -9.76890 -9.32740 -9.05406 -8.73520 -7.14294 -6.10445 -3.58100 0.70423 2.52124 2.57572 2.61249 3.08670 3.22572 3.30821 3.32379 3.33613 4.07407 4.13908 4.26646 4.50992 4.59823 4.70592 4.76319 4.77484 4.91997 5.06772 5.11040 5.16344 5.17652 5.24245 5.29810 5.30213 5.44966 5.68743 5.72691 5.74048 5.76082 5.83303 5.94773 6.01796 6.03446 6.11472 6.27685 6.33433 6.39442 6.47571 6.99764 7.18750 7.35667 7.42814 7.57000 8.12454 8.19416 8.86146 9.47840 9.95274 10.97279 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002175 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.666053 B =12869.911734 C =13308.637603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.534 6.534 8 N -0.729 5.729 9 C 0.090 3.910 10 C -0.112 4.112 11 C -0.578 4.578 12 H 0.139 0.861 13 C 0.162 3.838 14 N -0.594 5.594 15 C -0.269 4.269 16 H 0.075 0.925 17 C 0.009 3.991 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.174 3.826 24 C -0.588 4.588 25 S 2.394 3.606 26 O -0.957 6.957 27 O -0.960 6.960 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.259 0.741 43 H 0.032 0.968 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -11.216 -12.660 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.292 3.708 7 O -0.410 6.410 8 N -0.382 5.382 9 C -0.033 4.033 10 C -0.151 4.151 11 C -0.692 4.692 12 H 0.157 0.843 13 C 0.034 3.966 14 N -0.315 5.315 15 C -0.398 4.398 16 H 0.092 0.908 17 C -0.191 4.191 18 N -0.539 5.539 19 Si 0.737 3.263 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.047 3.953 24 C -0.723 4.723 25 S 2.580 3.420 26 O -0.954 6.954 27 O -0.957 6.957 28 H 0.233 0.767 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.159 -11.451 -11.816 18.832 hybrid contribution 0.916 1.471 -0.268 1.753 sum -8.243 -9.980 -12.084 17.708 Atomic orbital electron populations 1.24924 0.96029 1.01071 1.00904 1.23107 0.94600 1.00393 1.00443 1.18772 0.84889 1.01458 0.99874 1.21293 0.92976 1.01175 0.98492 1.21677 0.97449 1.00997 0.97887 1.20696 0.82187 0.81728 0.86152 1.90757 1.55125 1.47883 1.47211 1.45979 1.07208 1.52165 1.32811 1.21896 0.93651 0.96684 0.91093 1.21525 0.93854 1.00415 0.99346 1.30485 1.10611 1.11303 1.16790 0.84289 1.20779 0.85307 0.96546 0.94003 1.44259 1.65492 1.21924 0.99796 1.19275 1.25318 0.90099 1.05103 0.90751 1.25116 0.97511 0.97403 0.99064 1.69947 1.31141 1.34414 1.18377 0.86159 0.81018 0.81367 0.77781 1.20048 1.21576 1.21293 1.20487 0.88864 0.97902 0.88083 1.30451 1.12526 1.16530 1.12794 1.08568 0.75831 0.77581 0.79998 1.93496 1.79138 1.36788 1.85999 1.93531 1.29076 1.87691 1.85404 0.76712 0.89476 0.89446 0.90586 0.90636 0.88597 0.88554 0.76579 0.89550 0.90424 0.89159 0.89979 0.90278 0.93232 0.93068 0.94996 0.87096 0.86814 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.19 -1.72 13.34 -37.12 -0.50 -2.21 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.89 4.46 -26.74 -0.12 -1.01 16 5 C -0.14 -1.04 5.70 -27.89 -0.16 -1.20 16 6 C 0.51 6.33 7.83 -10.98 -0.09 6.24 16 7 O -0.53 -9.38 15.98 5.56 0.09 -9.29 16 8 N -0.73 -8.21 5.56 -60.30 -0.33 -8.54 16 9 C 0.09 1.31 5.32 -4.05 -0.02 1.29 16 10 C -0.11 -1.45 4.81 -26.74 -0.13 -1.58 16 11 C -0.58 -9.43 2.64 -26.88 -0.07 -9.50 16 12 H 0.14 2.34 8.14 -51.92 -0.42 1.92 16 13 C 0.16 2.86 5.52 -4.25 -0.02 2.84 16 14 N -0.59 -12.89 2.83 -173.49 -0.49 -13.38 16 15 C -0.27 -6.47 9.46 -15.06 -0.14 -6.61 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.01 0.22 4.81 -17.43 -0.08 0.14 16 18 N -0.90 -22.79 10.12 55.49 0.56 -22.22 16 19 Si 0.91 19.79 29.60 -169.99 -5.03 14.76 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.17 3.69 5.34 -4.01 -0.02 3.66 16 24 C -0.59 -11.45 6.36 37.26 0.24 -11.21 16 25 S 2.39 44.15 4.32 -107.50 -0.46 43.69 16 26 O -0.96 -19.08 18.02 -57.81 -1.04 -20.12 16 27 O -0.96 -19.89 15.83 -57.81 -0.92 -20.81 16 28 H 0.22 1.13 7.80 -54.09 -0.42 0.71 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 2.93 8.47 -40.82 -0.35 2.59 16 36 H 0.09 1.51 5.65 -51.93 -0.29 1.22 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.31 7.87 -51.93 -0.41 0.91 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 2.60 5.90 -51.93 -0.31 2.29 16 45 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 46 H 0.15 3.26 7.12 -51.93 -0.37 2.89 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -33.66 388.90 -9.67 -43.33 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.19 Total: 7.40 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -0.71 Total: -20.67 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.26 Total: -44.15 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.87 Total: -50.22 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 44.15 SS G_CDS: -0.46 Total: 43.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.66 -9.67 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230454793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.675 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds