Wall clock time and date at job start Wed Apr 1 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47411 * 233.35235 * 3 2 1 5 5 C 1.52988 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47262 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47541 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47573 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.64235 * 304.73584 * 11 10 9 13 13 C 1.52708 * 109.62770 * 184.56388 * 11 10 9 14 14 N 1.46388 * 109.77072 * 182.00679 * 13 11 10 15 15 C 1.36931 * 119.69547 * 244.31119 * 14 13 11 16 16 H 1.08000 * 120.00262 * 331.36968 * 15 14 13 17 17 C 1.38813 * 119.99851 * 151.37044 * 15 14 13 18 18 N 1.31618 * 120.00318 * 340.81284 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 160.54459 * 17 15 14 20 20 H 1.48506 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47410 * 119.99543 * 19 17 15 22 22 H 1.48505 * 109.47191 * 240.00036 * 19 17 15 23 23 C 1.46383 * 120.60099 * 64.03412 * 14 13 11 24 24 C 1.53190 * 109.50944 * 295.95833 * 23 14 13 25 25 S 1.81661 * 109.55526 * 64.99933 * 11 10 9 26 26 O 1.42105 * 108.65263 * 61.06051 * 25 11 10 27 27 O 1.42102 * 108.65435 * 289.75417 * 25 11 10 28 28 H 4.44653 * 5.63250 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47095 * 113.35016 * 3 2 1 30 30 H 1.09003 * 109.46958 * 353.35721 * 3 2 1 31 31 H 1.09003 * 109.46687 * 59.99772 * 4 3 2 32 32 H 1.09001 * 109.46944 * 300.00180 * 4 3 2 33 33 H 1.09003 * 109.47319 * 60.00346 * 5 4 3 34 34 H 1.09001 * 109.47458 * 300.00053 * 5 4 3 35 35 H 0.96997 * 119.99989 * 0.02562 * 8 6 5 36 36 H 1.09003 * 109.46704 * 59.99781 * 9 8 6 37 37 H 1.09001 * 109.46959 * 300.00169 * 9 8 6 38 38 H 1.09003 * 109.47115 * 60.00260 * 10 9 8 39 39 H 1.09001 * 109.47318 * 300.00177 * 10 9 8 40 40 H 1.08994 * 109.33747 * 61.90940 * 13 11 10 41 41 H 1.09000 * 109.32539 * 302.09455 * 13 11 10 42 42 H 0.96990 * 120.00465 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46615 * 55.97074 * 23 14 13 44 44 H 1.09004 * 109.46644 * 175.94660 * 23 14 13 45 45 H 1.08998 * 109.55450 * 178.10003 * 24 23 14 46 46 H 1.09001 * 109.55558 * 298.31096 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8619 1.1573 5 6 4.6855 0.8620 1.1577 6 6 5.1876 1.7098 2.2980 7 8 4.3992 2.2601 3.0373 8 7 6.5126 1.8573 2.4957 9 6 7.0006 2.6819 3.6039 10 6 8.5305 2.6820 3.6044 11 6 9.0402 3.5437 4.7613 12 1 8.6108 4.5432 4.6907 13 6 10.5630 3.6389 4.6979 14 7 11.0577 4.4231 5.8308 15 6 11.6904 5.6163 5.6051 16 1 12.2303 5.7754 4.6834 17 6 11.6378 6.6214 6.5611 18 7 10.7038 6.5998 7.4882 19 14 12.8972 8.0008 6.5363 20 1 13.8376 7.7924 5.4059 21 1 12.2024 9.3025 6.3690 22 1 13.6533 8.0038 7.8144 23 6 10.8768 3.9461 7.2028 24 6 9.3816 3.8863 7.5307 25 16 8.5604 2.7860 6.3411 26 8 9.1557 1.4986 6.4271 27 8 7.1540 2.9152 6.4986 28 1 -1.0501 0.0000 -0.0004 29 1 3.0091 0.4082 -0.9436 30 1 3.0098 -1.0200 0.1189 31 1 2.7925 0.4543 2.1008 32 1 2.7919 1.8825 1.0384 33 1 5.0491 1.2693 0.2142 34 1 5.0490 -0.1587 1.2769 35 1 7.1431 1.4181 1.9038 36 1 6.6373 2.2744 4.5473 37 1 6.6368 3.7026 3.4849 38 1 8.8941 3.0893 2.6609 39 1 8.8939 1.6613 3.7236 40 1 10.8559 4.1223 3.7660 41 1 10.9890 2.6364 4.7365 42 1 10.6669 7.3023 8.1559 43 1 11.3104 2.9510 7.3016 44 1 11.3730 4.6285 7.8930 45 1 9.2448 3.4993 8.5405 46 1 8.9527 4.8860 7.4618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230454793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:49 Heat of formation + Delta-G solvation = -70.129423 kcal Electronic energy + Delta-G solvation = -27703.762740 eV Core-core repulsion = 23721.534644 eV Total energy + Delta-G solvation = -3982.228095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.80706 -38.83077 -37.94357 -37.27493 -36.82571 -36.36171 -34.64170 -33.39738 -33.07996 -31.49020 -29.72093 -28.25999 -26.08893 -24.88157 -23.35065 -22.95224 -22.26800 -21.24293 -19.78918 -19.13645 -18.89574 -18.00629 -17.80109 -17.30822 -17.14562 -16.93537 -16.65604 -16.39242 -15.82252 -15.67189 -15.37464 -15.23483 -15.03091 -14.71188 -14.55093 -13.91809 -13.75736 -13.65669 -13.44077 -13.35650 -13.26859 -13.07357 -13.01429 -13.01259 -12.77772 -12.63451 -12.46417 -12.34378 -12.21752 -11.98642 -11.91709 -11.89787 -11.34922 -11.17704 -10.95423 -10.91795 -10.81060 -10.51107 -10.12214 -8.88987 -7.94211 -5.42774 -0.78935 1.48461 1.54305 1.61568 1.66846 1.82234 1.84591 1.93697 2.18267 2.49301 2.70127 3.10717 3.29306 3.36606 3.54245 3.58733 3.74515 3.89461 3.98748 4.08275 4.11277 4.18883 4.20688 4.37427 4.40586 4.53515 4.65246 4.67170 4.71071 4.74824 4.82440 4.83098 4.99100 5.03002 5.10330 5.21948 5.22699 5.32110 5.34267 5.42606 5.48982 5.70632 6.34062 6.58975 6.73368 7.05660 7.31569 7.72542 8.16537 9.11415 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002175 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.666053 B =12869.911734 C =13308.637603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.009 4.009 4 C -0.099 4.099 5 C -0.127 4.127 6 C 0.497 3.503 7 O -0.596 6.596 8 N -0.714 5.714 9 C 0.089 3.911 10 C -0.104 4.104 11 C -0.559 4.559 12 H 0.134 0.866 13 C 0.158 3.842 14 N -0.609 5.609 15 C -0.270 4.270 16 H 0.081 0.919 17 C -0.039 4.039 18 N -0.920 5.920 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.294 1.294 23 C 0.172 3.828 24 C -0.593 4.593 25 S 2.407 3.593 26 O -0.969 6.969 27 O -0.987 6.987 28 H 0.238 0.762 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.423 0.577 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.253 0.747 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -12.829 -15.777 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.045 4.045 4 C -0.137 4.137 5 C -0.166 4.166 6 C 0.286 3.714 7 O -0.476 6.476 8 N -0.368 5.368 9 C -0.036 4.036 10 C -0.143 4.143 11 C -0.676 4.676 12 H 0.152 0.848 13 C 0.031 3.969 14 N -0.330 5.330 15 C -0.400 4.400 16 H 0.098 0.902 17 C -0.236 4.236 18 N -0.564 5.564 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.221 1.221 23 C 0.045 3.955 24 C -0.727 4.727 25 S 2.595 3.405 26 O -0.966 6.966 27 O -0.984 6.984 28 H 0.254 0.746 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.261 0.739 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.146 0.854 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.001 -13.112 -14.952 21.437 hybrid contribution 0.541 1.934 0.670 2.117 sum -7.460 -11.179 -14.282 19.611 Atomic orbital electron populations 1.25714 0.97162 1.00754 1.00506 1.23905 0.95968 1.00825 1.00908 1.18860 0.83569 1.02270 0.99792 1.21206 0.94254 1.00053 0.98187 1.21724 0.96005 1.01835 0.97028 1.21709 0.81915 0.81233 0.86584 1.90737 1.56666 1.50509 1.49698 1.45817 1.07523 1.51397 1.32044 1.21671 0.94777 0.96246 0.90885 1.21576 0.92438 1.00971 0.99349 1.30259 1.09902 1.11416 1.16003 0.84828 1.20971 0.85589 0.97107 0.93264 1.44412 1.66081 1.21674 1.00844 1.19563 1.24953 0.90552 1.04901 0.90160 1.25725 0.98923 0.99464 0.99447 1.70075 1.32414 1.34888 1.19020 0.85316 0.79294 0.78887 0.77472 1.18959 1.22540 1.22130 1.20411 0.89493 0.97785 0.87827 1.30416 1.11703 1.15876 1.14695 1.08123 0.74824 0.77027 0.80506 1.93470 1.79139 1.37462 1.86544 1.93507 1.30691 1.87971 1.86192 0.74560 0.87194 0.87352 0.93286 0.93018 0.84882 0.85239 0.73852 0.92954 0.91905 0.85324 0.88089 0.88445 0.91259 0.93796 0.93493 0.89812 0.85445 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.70 19.25 74.32 1.43 -2.27 16 2 C -0.22 -3.81 13.34 31.13 0.42 -3.39 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.64 4.46 30.59 0.14 -1.50 16 5 C -0.13 -1.49 5.70 29.85 0.17 -1.32 16 6 C 0.50 11.77 7.83 87.66 0.69 12.45 16 7 O -0.60 -21.55 15.98 -3.03 -0.05 -21.60 16 8 N -0.71 -14.29 5.56 -463.07 -2.57 -16.87 16 9 C 0.09 2.47 5.32 86.38 0.46 2.93 16 10 C -0.10 -2.35 4.81 30.59 0.15 -2.20 16 11 C -0.56 -17.19 2.64 30.50 0.08 -17.11 16 12 H 0.13 4.36 8.14 -2.38 -0.02 4.34 16 13 C 0.16 5.13 5.52 86.30 0.48 5.61 16 14 N -0.61 -25.72 2.83 -702.79 -1.99 -27.70 16 15 C -0.27 -12.71 9.46 84.03 0.79 -11.92 16 16 H 0.08 3.62 7.89 -2.91 -0.02 3.60 16 17 C -0.04 -1.90 4.81 84.86 0.41 -1.49 16 18 N -0.92 -47.79 10.12 21.65 0.22 -47.57 16 19 Si 0.96 40.78 29.60 68.60 2.03 42.81 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.17 7.29 5.34 86.46 0.46 7.76 16 24 C -0.59 -23.48 6.36 72.05 0.46 -23.02 16 25 S 2.41 87.90 4.32 -56.49 -0.24 87.66 16 26 O -0.97 -37.36 18.02 -127.39 -2.30 -39.66 16 27 O -0.99 -41.73 15.83 -127.39 -2.02 -43.75 16 28 H 0.24 2.28 7.80 -4.41 -0.03 2.24 16 29 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.42 4.38 8.47 -92.71 -0.79 3.59 16 36 H 0.05 1.84 5.65 -2.39 -0.01 1.83 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 2.85 7.87 -2.39 -0.02 2.83 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.25 12.96 8.31 -92.72 -0.77 12.19 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 4.01 5.90 -2.39 -0.01 4.00 16 45 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 46 H 0.13 5.80 7.12 -2.39 -0.02 5.79 16 Total: -1.00 -76.37 388.90 -0.43 -76.80 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.19 Total: 25.29 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 6.29 Total: -35.41 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -4.34 Total: -92.15 kcal Atomic # 8 Polarization: -100.64 SS G_CDS: -4.36 Total: -105.00 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 87.90 SS G_CDS: -0.24 Total: 87.66 kcal Total: -76.37 -0.43 -76.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230454793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.675 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds