Wall clock time and date at job start Wed Apr 1 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 C 1.52999 * 109.47051 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46985 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00243 * 269.99663 * 5 4 3 7 7 H 1.08007 * 119.99523 * 41.36356 * 6 5 4 8 8 C 1.38805 * 120.00301 * 221.34845 * 6 5 4 9 9 N 1.31618 * 120.00119 * 17.84748 * 8 6 5 10 10 Si 1.86803 * 120.00040 * 197.83557 * 8 6 5 11 11 H 1.48504 * 109.46842 * 90.00605 * 10 8 6 12 12 H 1.48506 * 109.47219 * 210.00397 * 10 8 6 13 13 H 1.48498 * 109.47316 * 330.00613 * 10 8 6 14 14 C 1.46501 * 119.99676 * 90.00808 * 5 4 3 15 15 C 1.50710 * 109.46664 * 275.78557 * 14 5 4 16 16 C 1.38279 * 119.94405 * 276.60254 * 15 14 5 17 17 C 1.38124 * 120.05806 * 179.74355 * 16 15 14 18 18 C 1.38759 * 119.94013 * 0.51282 * 17 16 15 19 19 O 1.35901 * 120.05611 * 179.73829 * 18 17 16 20 20 C 1.42904 * 116.99725 * 359.73143 * 19 18 17 21 21 C 1.38714 * 119.88502 * 359.46826 * 18 17 16 22 22 S 1.76200 * 120.02537 * 180.29881 * 21 18 17 23 23 N 1.65611 * 107.21589 * 294.99896 * 22 21 18 24 24 O 1.42102 * 106.40052 * 48.53538 * 22 21 18 25 25 O 1.42094 * 106.40111 * 181.46160 * 22 21 18 26 26 C 1.38159 * 119.94699 * 0.27693 * 21 18 17 27 27 H 1.09007 * 109.46650 * 59.99998 * 1 2 3 28 28 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47332 * 300.00435 * 1 2 3 30 30 H 1.09000 * 109.46997 * 239.99753 * 2 1 3 31 31 H 1.09007 * 109.46650 * 120.00001 * 2 1 3 32 32 H 1.09000 * 109.47369 * 59.99981 * 3 2 1 33 33 H 1.08999 * 109.47635 * 299.99687 * 3 2 1 34 34 H 1.09004 * 109.47005 * 60.00360 * 4 3 2 35 35 H 1.08997 * 109.47573 * 300.00460 * 4 3 2 36 36 H 0.97000 * 120.00415 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47358 * 155.78931 * 14 5 4 38 38 H 1.08999 * 109.47550 * 35.78251 * 14 5 4 39 39 H 1.08007 * 119.97523 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.03295 * 180.27597 * 17 16 15 41 41 H 1.09002 * 109.46169 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.46759 * 299.99430 * 20 19 18 43 43 H 1.09000 * 109.47263 * 59.99618 * 20 19 18 44 44 H 0.96990 * 119.99732 * 0.02562 * 23 22 21 45 45 H 0.96995 * 119.99533 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.97503 * 179.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2872 3.4685 -1.1861 7 1 3.5921 3.3554 -2.0050 8 6 5.4121 4.2677 -1.3359 9 7 6.4246 4.1415 -0.5045 10 14 5.4893 5.5223 -2.7178 11 1 4.9384 6.8168 -2.2424 12 1 6.9012 5.7096 -3.1381 13 1 4.6895 5.0378 -3.8715 14 6 4.3021 3.5149 1.2685 15 6 3.0115 4.1062 1.7744 16 6 2.5833 5.3338 1.3034 17 6 1.3981 5.8754 1.7615 18 6 0.6424 5.1916 2.7031 19 8 -0.5214 5.7248 3.1593 20 6 -0.9037 6.9962 2.6306 21 6 1.0740 3.9601 3.1736 22 16 0.1132 3.0849 4.3634 23 7 0.1087 3.9892 5.7508 24 8 -1.2228 3.0859 3.8795 25 8 0.8309 1.8954 4.6621 26 6 2.2575 3.4202 2.7083 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 7.2109 4.6997 -0.6094 37 1 5.0306 4.3109 1.1144 38 1 4.6883 2.8056 2.0005 39 1 3.1737 5.8675 0.5732 40 1 1.0618 6.8321 1.3900 41 1 -1.8487 7.3058 3.0769 42 1 -0.1337 7.7322 2.8620 43 1 -1.0204 6.9200 1.5496 44 1 0.5858 4.8331 5.7812 45 1 -0.3717 3.6752 6.5327 46 1 2.5942 2.4616 3.0747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233304208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:30 Heat of formation + Delta-G solvation = -79.973737 kcal Electronic energy + Delta-G solvation = -29457.947237 eV Core-core repulsion = 25475.292260 eV Total energy + Delta-G solvation = -3982.654977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.11844 -37.86767 -36.79149 -35.94016 -35.57643 -34.02653 -33.10924 -31.57921 -31.21485 -30.35609 -28.12125 -27.35520 -25.35223 -23.75879 -23.07238 -21.60651 -20.73730 -20.15930 -19.27789 -18.42846 -17.42685 -17.19301 -16.73882 -16.30036 -15.82188 -15.51568 -15.13069 -14.86371 -14.80939 -14.20049 -13.98642 -13.88256 -13.61420 -13.45802 -13.25219 -12.63900 -12.26048 -12.13123 -11.97688 -11.90410 -11.81737 -11.77559 -11.69471 -11.46657 -11.32437 -11.08859 -10.97054 -10.80256 -10.63413 -10.45995 -10.39778 -10.35741 -10.30272 -10.12209 -9.88400 -9.68060 -9.09202 -8.58610 -7.91015 -6.62155 -5.92130 -3.52359 0.63874 1.16427 1.66081 3.11129 3.24422 3.31479 3.34413 3.35998 3.69089 3.97047 4.37361 4.72462 4.87893 5.05550 5.17919 5.20544 5.28099 5.35151 5.39328 5.48881 5.58585 5.67897 5.70074 5.77526 5.83766 5.98938 6.02096 6.05015 6.25809 6.30361 6.39379 6.44321 6.45969 6.55412 6.59235 6.67758 6.73326 6.91612 7.02659 7.05275 7.12496 7.22484 7.34826 7.44839 7.72861 8.44454 9.08452 9.67839 10.30470 11.08910 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004554 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.856581 B = 6146.743794 C = 7385.315617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.147 3.853 5 N -0.575 5.575 6 C -0.258 4.258 7 H 0.059 0.941 8 C 0.017 3.983 9 N -0.884 5.884 10 Si 0.895 3.105 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.182 3.818 15 C -0.121 4.121 16 C -0.003 4.003 17 C -0.228 4.228 18 C 0.194 3.806 19 O -0.317 6.317 20 C 0.029 3.971 21 C -0.703 4.703 22 S 2.706 3.294 23 N -1.249 6.249 24 O -0.961 6.961 25 O -0.971 6.971 26 C 0.010 3.990 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.257 0.743 37 H 0.100 0.900 38 H 0.038 0.962 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.415 0.585 45 H 0.415 0.585 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 3.889 9.969 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.182 4.182 4 C 0.021 3.979 5 N -0.294 5.294 6 C -0.388 4.388 7 H 0.076 0.924 8 C -0.184 4.184 9 N -0.526 5.526 10 Si 0.724 3.276 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.201 1.201 14 C 0.056 3.944 15 C -0.125 4.125 16 C -0.022 4.022 17 C -0.247 4.247 18 C 0.147 3.853 19 O -0.230 6.230 20 C -0.066 4.066 21 C -0.792 4.792 22 S 2.796 3.204 23 N -0.922 5.922 24 O -0.950 6.950 25 O -0.961 6.961 26 C -0.011 4.011 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.241 0.759 45 H 0.244 0.756 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.536 2.930 9.777 15.403 hybrid contribution 0.416 1.898 -0.939 2.158 sum -11.119 4.827 8.839 15.002 Atomic orbital electron populations 1.21783 0.96740 1.00733 1.01623 1.21508 0.95101 0.98220 1.01349 1.22294 0.99526 0.94781 1.01624 1.20948 0.91014 0.86805 0.99151 1.43688 1.76024 1.08095 1.01549 1.19019 1.02898 1.25169 0.91745 0.92379 1.25306 0.94405 1.01110 0.97610 1.69995 1.04675 1.39111 1.38775 0.86425 0.77071 0.81736 0.82370 1.21252 1.21544 1.20120 1.19953 0.90074 0.97542 0.86846 1.21478 1.01579 0.94181 0.95290 1.21283 0.93079 0.94036 0.93849 1.21281 0.98590 1.02343 1.02499 1.18193 0.84403 0.90763 0.91988 1.86059 1.36370 1.36229 1.64303 1.23092 1.01052 0.82500 0.99940 1.29428 1.14605 1.08949 1.26253 1.01263 0.73757 0.72625 0.72776 1.53022 1.69782 1.37977 1.31434 1.93586 1.35797 1.85861 1.79790 1.93577 1.74107 1.44434 1.83959 1.20762 0.89526 0.97952 0.92817 0.93101 0.93397 0.92999 0.92485 0.92429 0.92714 0.92614 0.93235 0.94741 0.93326 0.88199 0.94351 0.84874 0.85351 0.88038 0.92382 0.92216 0.75861 0.75586 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.14 -2.69 5.41 -26.73 -0.14 -2.83 16 4 C 0.15 3.06 5.70 -4.04 -0.02 3.04 16 5 N -0.58 -13.44 2.39 -174.60 -0.42 -13.86 16 6 C -0.26 -6.60 9.44 -15.06 -0.14 -6.74 16 7 H 0.06 1.52 7.89 -52.48 -0.41 1.11 16 8 C 0.02 0.43 4.95 -17.43 -0.09 0.35 16 9 N -0.88 -23.79 11.62 55.49 0.64 -23.14 16 10 Si 0.89 20.25 29.59 -169.99 -5.03 15.22 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.18 3.97 5.37 -5.19 -0.03 3.94 16 15 C -0.12 -2.29 4.94 -104.60 -0.52 -2.81 16 16 C 0.00 -0.06 9.72 -39.61 -0.38 -0.44 16 17 C -0.23 -3.47 9.04 -39.43 -0.36 -3.82 16 18 C 0.19 2.96 6.63 -39.21 -0.26 2.70 16 19 O -0.32 -4.24 9.29 -29.11 -0.27 -4.51 16 20 C 0.03 0.27 9.81 101.05 0.99 1.26 16 21 C -0.70 -11.27 5.89 -39.43 -0.23 -11.50 16 22 S 2.71 40.03 5.87 -107.50 -0.63 39.40 16 23 N -1.25 -12.42 9.55 60.35 0.58 -11.84 16 24 O -0.96 -16.95 17.30 -62.48 -1.08 -18.03 16 25 O -0.97 -16.69 16.97 -57.17 -0.97 -17.66 16 26 C 0.01 0.17 7.26 -39.61 -0.29 -0.12 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 1.06 5.61 -51.93 -0.29 0.77 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 35 H 0.03 0.69 7.95 -51.93 -0.41 0.27 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.10 2.41 5.75 -51.93 -0.30 2.11 16 38 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 40 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 43 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 44 H 0.41 3.32 8.92 -34.47 -0.31 3.02 16 45 H 0.41 3.12 8.96 -34.47 -0.31 2.81 16 46 H 0.14 2.43 7.33 -52.48 -0.38 2.04 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -32.38 387.22 -9.49 -41.88 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.89 Total: 7.71 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.26 Total: -21.00 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.80 Total: -48.84 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -2.32 Total: -40.20 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Atomic # 16 Polarization: 40.03 SS G_CDS: -0.63 Total: 39.40 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.38 -9.49 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233304208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.098 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds