Wall clock time and date at job start Wed Apr 1 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99604 * 2 1 4 4 O 1.20821 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99566 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47109 * 60.00100 * 5 3 2 7 7 C 1.53003 * 109.47078 * 299.99583 * 5 3 2 8 8 C 1.50702 * 109.46951 * 179.97438 * 5 3 2 9 9 N 1.31831 * 118.97010 * 59.99840 * 8 5 3 10 10 C 1.32193 * 120.94620 * 180.02562 * 9 8 5 11 11 C 1.39759 * 118.94927 * 0.02562 * 10 9 8 12 12 C 1.48289 * 120.92628 * 179.97438 * 11 10 9 13 13 C 1.39289 * 120.15737 * 309.97353 * 12 11 10 14 14 C 1.38011 * 119.94831 * 180.02562 * 13 12 11 15 15 C 1.38444 * 120.26829 * 359.97438 * 14 13 12 16 16 C 1.38115 * 120.32407 * 0.02562 * 15 14 13 17 17 C 1.38757 * 120.05080 * 359.97438 * 16 15 14 18 18 O 1.35658 * 120.13657 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00301 * 354.39225 * 18 17 16 20 20 H 1.08002 * 119.99517 * 5.06069 * 19 18 17 21 21 C 1.38654 * 120.00326 * 185.06087 * 19 18 17 22 22 N 1.31558 * 119.99952 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99819 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47095 * 90.00244 * 23 21 19 25 25 H 1.48498 * 109.47105 * 210.00079 * 23 21 19 26 26 H 1.48506 * 109.47484 * 330.00058 * 23 21 19 27 27 C 1.39764 * 118.14922 * 0.25026 * 11 10 9 28 28 N 1.31837 * 118.97212 * 240.02292 * 8 5 3 29 29 H 1.08999 * 109.47525 * 300.00097 * 1 2 3 30 30 H 1.09000 * 109.47036 * 60.00914 * 1 2 3 31 31 H 1.09006 * 109.46578 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47277 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47467 * 299.99326 * 6 5 3 34 34 H 1.08995 * 109.47319 * 59.99872 * 6 5 3 35 35 H 1.08993 * 109.47740 * 300.00461 * 7 5 3 36 36 H 1.09004 * 109.47099 * 60.00918 * 7 5 3 37 37 H 1.09006 * 109.46924 * 179.97438 * 7 5 3 38 38 H 1.08007 * 120.52478 * 180.02562 * 10 9 8 39 39 H 1.08006 * 120.02519 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.86694 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.83858 * 180.27782 * 15 14 13 42 42 H 1.08000 * 119.97359 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99602 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.52454 * 179.74957 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1138 0.5812 -1.2483 7 6 4.1128 0.5817 1.2503 8 6 3.9935 2.7201 -0.0002 9 7 3.6211 3.4966 0.9980 10 6 3.9734 4.7702 1.0365 11 6 4.7514 5.2886 -0.0023 12 6 5.1709 6.7109 -0.0036 13 6 4.2311 7.7178 0.2041 14 6 4.6261 9.0402 0.2014 15 6 5.9542 9.3713 -0.0065 16 6 6.8954 8.3819 -0.2136 17 6 6.5129 7.0481 -0.2137 18 8 7.4360 6.0749 -0.4164 19 6 8.6862 6.4722 -0.7272 20 1 8.9351 7.5232 -0.7246 21 6 9.6525 5.5317 -1.0500 22 7 10.8726 5.9195 -1.3528 23 14 9.2218 3.7141 -1.0551 24 1 8.7443 3.3223 -2.4056 25 1 10.4264 2.9190 -0.7060 26 1 8.1522 3.4559 -0.0578 27 6 5.1182 4.4306 -1.0428 28 7 4.7276 3.1685 -0.9992 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 5.2023 0.6386 -1.2481 33 1 3.8048 -0.4642 -1.2482 34 1 3.7244 1.0751 -2.1385 35 1 3.7227 1.0759 2.1400 36 1 3.8039 -0.4636 1.2503 37 1 5.2014 0.6384 1.2504 38 1 3.6648 5.4001 1.8578 39 1 3.1940 7.4639 0.3671 40 1 3.8965 9.8198 0.3630 41 1 6.2565 10.4082 -0.0027 42 1 7.9300 8.6466 -0.3749 43 1 11.5484 5.2615 -1.5790 44 1 5.7156 4.7918 -1.8669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:54 Heat of formation + Delta-G solvation = -36.153934 kcal Electronic energy + Delta-G solvation = -29737.799598 eV Core-core repulsion = 25621.600840 eV Total energy + Delta-G solvation = -4116.198759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31033 -40.30414 -39.24387 -36.84927 -36.59778 -35.64777 -33.46509 -32.70009 -32.34047 -29.51703 -28.66551 -27.92578 -27.52364 -25.47314 -24.81339 -24.05591 -23.32947 -21.59241 -21.14538 -20.21860 -18.03041 -17.59947 -17.56046 -17.36178 -17.03178 -16.42225 -15.95216 -15.46589 -14.98215 -14.56630 -14.25658 -14.08222 -13.92469 -13.89915 -13.82606 -13.62099 -13.35045 -13.21296 -12.67471 -12.61059 -12.50086 -12.33718 -12.25606 -12.07396 -11.73281 -11.60815 -11.35864 -11.35092 -10.98155 -10.94269 -10.89733 -10.65036 -10.47301 -10.32688 -10.23158 -9.55647 -9.45270 -8.99712 -8.93755 -8.15558 -7.46965 -6.55672 -4.22508 0.92489 1.43614 1.97045 2.11431 2.13520 2.52073 3.13974 3.19569 3.32993 3.77677 4.00677 4.12150 4.30415 4.34049 4.61272 4.62097 4.74951 4.90294 4.90551 4.92600 4.95538 4.99724 5.07080 5.26646 5.34974 5.38457 5.50565 5.54248 5.62277 5.63493 5.71222 5.77411 5.88093 5.98895 6.05037 6.16676 6.23121 6.28081 6.35271 6.51482 6.64561 6.91565 6.98475 7.12473 7.27339 7.43427 7.63397 7.65100 7.87679 8.32994 8.78615 9.37071 10.51162 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.003921 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.411333 B = 7138.697003 C = 9146.937595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.489 6.489 5 C 0.023 3.977 6 C -0.129 4.129 7 C -0.136 4.136 8 C 0.305 3.695 9 N -0.495 5.495 10 C 0.147 3.853 11 C -0.101 4.101 12 C -0.137 4.137 13 C -0.056 4.056 14 C -0.205 4.205 15 C -0.065 4.065 16 C -0.218 4.218 17 C 0.175 3.825 18 O -0.207 6.207 19 C -0.392 4.392 20 H 0.109 0.891 21 C 0.070 3.930 22 N -0.872 5.872 23 Si 0.897 3.103 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.260 1.260 27 C 0.166 3.834 28 N -0.504 5.504 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.167 0.833 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.282 0.718 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 -8.282 2.846 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.374 6.374 5 C 0.020 3.980 6 C -0.186 4.186 7 C -0.194 4.194 8 C 0.037 3.963 9 N -0.208 5.208 10 C -0.019 4.019 11 C -0.106 4.106 12 C -0.139 4.139 13 C -0.074 4.074 14 C -0.224 4.224 15 C -0.083 4.083 16 C -0.237 4.237 17 C 0.122 3.878 18 O -0.110 6.110 19 C -0.467 4.467 20 H 0.127 0.873 21 C -0.135 4.135 22 N -0.508 5.508 23 Si 0.722 3.278 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.184 1.184 27 C 0.000 4.000 28 N -0.216 5.216 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.184 0.816 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.092 0.908 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.933 -9.273 2.785 18.644 hybrid contribution 0.224 0.591 -0.032 0.633 sum -15.709 -8.682 2.753 18.159 Atomic orbital electron populations 1.23259 0.76411 1.03554 1.02585 1.86477 1.23231 1.33100 1.84408 1.23250 0.91041 0.81474 0.72488 1.90689 1.66652 1.36247 1.43791 1.19002 0.87702 0.90326 1.01005 1.21740 1.02999 0.99418 0.94482 1.21862 1.02220 1.00511 0.94835 1.21866 0.92467 0.94759 0.87251 1.67934 1.21225 1.05536 1.26058 1.23261 0.91762 0.90662 0.96229 1.20412 0.98450 0.95465 0.96226 1.17499 0.90987 0.90409 1.15040 1.20710 0.97468 0.91991 0.97254 1.20605 0.96082 0.95511 1.10165 1.20931 0.92893 0.98404 0.96098 1.21250 1.01179 0.91954 1.09337 1.19001 0.87871 0.88140 0.92824 1.83549 1.19340 1.31963 1.76196 1.20777 0.82202 0.96418 1.47315 0.87348 1.24436 0.94000 0.99960 0.95112 1.69632 1.02068 1.35843 1.43284 0.86306 0.78573 0.82919 0.80005 1.19251 1.20619 1.18425 1.23378 0.92628 0.87234 0.96711 1.68017 1.11930 1.16026 1.25666 0.91882 0.92005 0.88062 0.90026 0.91021 0.91326 0.90912 0.90321 0.90749 0.81613 0.86595 0.86987 0.86890 0.84516 0.90810 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.09 10.37 -39.27 -0.41 -4.50 16 3 C 0.48 6.86 6.49 36.01 0.23 7.09 16 4 O -0.49 -8.48 15.25 -18.75 -0.29 -8.76 16 5 C 0.02 0.32 0.86 -156.81 -0.13 0.19 16 6 C -0.13 -1.58 7.59 37.15 0.28 -1.30 16 7 C -0.14 -1.61 8.30 37.16 0.31 -1.31 16 8 C 0.30 5.36 5.77 -157.12 -0.91 4.45 16 9 N -0.50 -8.83 9.25 -10.44 -0.10 -8.92 16 10 C 0.15 2.52 10.86 -16.83 -0.18 2.33 16 11 C -0.10 -1.88 5.28 -104.63 -0.55 -2.44 16 12 C -0.14 -2.56 5.53 -104.73 -0.58 -3.14 16 13 C -0.06 -0.90 9.55 -39.27 -0.37 -1.27 16 14 C -0.20 -3.13 10.03 -39.59 -0.40 -3.53 16 15 C -0.06 -1.07 10.03 -39.55 -0.40 -1.47 16 16 C -0.22 -4.34 9.16 -39.43 -0.36 -4.70 16 17 C 0.18 3.75 6.58 -38.74 -0.25 3.50 16 18 O -0.21 -5.04 7.04 0.38 0.00 -5.04 16 19 C -0.39 -10.39 9.95 30.89 0.31 -10.08 16 20 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 21 C 0.07 1.87 5.49 -17.52 -0.10 1.78 16 22 N -0.87 -24.26 13.96 55.48 0.77 -23.48 16 23 Si 0.90 21.19 28.62 -169.99 -4.86 16.32 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.17 3.22 10.12 -16.83 -0.17 3.05 16 28 N -0.50 -9.45 8.98 -10.45 -0.09 -9.55 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 36 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.17 2.35 8.06 -52.48 -0.42 1.93 16 39 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.85 5.64 -52.49 -0.30 2.56 16 43 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.17 3.29 7.79 -52.49 -0.41 2.89 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -31.19 379.21 -7.06 -38.26 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.60 Total: 5.43 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.21 Total: -5.47 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.58 Total: -41.95 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.69 Total: -18.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.19 -7.06 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.104 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds