Wall clock time and date at job start Wed Apr 1 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99604 * 2 1 4 4 O 1.20821 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99566 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47109 * 60.00100 * 5 3 2 7 7 C 1.53003 * 109.47078 * 299.99583 * 5 3 2 8 8 C 1.50702 * 109.46951 * 179.97438 * 5 3 2 9 9 N 1.31831 * 118.97010 * 59.99840 * 8 5 3 10 10 C 1.32193 * 120.94620 * 180.02562 * 9 8 5 11 11 C 1.39759 * 118.94927 * 0.02562 * 10 9 8 12 12 C 1.48289 * 120.92628 * 179.97438 * 11 10 9 13 13 C 1.39289 * 120.15737 * 309.97353 * 12 11 10 14 14 C 1.38011 * 119.94831 * 180.02562 * 13 12 11 15 15 C 1.38444 * 120.26829 * 359.97438 * 14 13 12 16 16 C 1.38115 * 120.32407 * 0.02562 * 15 14 13 17 17 C 1.38757 * 120.05080 * 359.97438 * 16 15 14 18 18 O 1.35658 * 120.13657 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00301 * 354.39225 * 18 17 16 20 20 H 1.08002 * 119.99517 * 5.06069 * 19 18 17 21 21 C 1.38654 * 120.00326 * 185.06087 * 19 18 17 22 22 N 1.31558 * 119.99952 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99819 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47095 * 90.00244 * 23 21 19 25 25 H 1.48498 * 109.47105 * 210.00079 * 23 21 19 26 26 H 1.48506 * 109.47484 * 330.00058 * 23 21 19 27 27 C 1.39764 * 118.14922 * 0.25026 * 11 10 9 28 28 N 1.31837 * 118.97212 * 240.02292 * 8 5 3 29 29 H 1.08999 * 109.47525 * 300.00097 * 1 2 3 30 30 H 1.09000 * 109.47036 * 60.00914 * 1 2 3 31 31 H 1.09006 * 109.46578 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47277 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47467 * 299.99326 * 6 5 3 34 34 H 1.08995 * 109.47319 * 59.99872 * 6 5 3 35 35 H 1.08993 * 109.47740 * 300.00461 * 7 5 3 36 36 H 1.09004 * 109.47099 * 60.00918 * 7 5 3 37 37 H 1.09006 * 109.46924 * 179.97438 * 7 5 3 38 38 H 1.08007 * 120.52478 * 180.02562 * 10 9 8 39 39 H 1.08006 * 120.02519 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.86694 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.83858 * 180.27782 * 15 14 13 42 42 H 1.08000 * 119.97359 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99602 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.52454 * 179.74957 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1138 0.5812 -1.2483 7 6 4.1128 0.5817 1.2503 8 6 3.9935 2.7201 -0.0002 9 7 3.6211 3.4966 0.9980 10 6 3.9734 4.7702 1.0365 11 6 4.7514 5.2886 -0.0023 12 6 5.1709 6.7109 -0.0036 13 6 4.2311 7.7178 0.2041 14 6 4.6261 9.0402 0.2014 15 6 5.9542 9.3713 -0.0065 16 6 6.8954 8.3819 -0.2136 17 6 6.5129 7.0481 -0.2137 18 8 7.4360 6.0749 -0.4164 19 6 8.6862 6.4722 -0.7272 20 1 8.9351 7.5232 -0.7246 21 6 9.6525 5.5317 -1.0500 22 7 10.8726 5.9195 -1.3528 23 14 9.2218 3.7141 -1.0551 24 1 8.7443 3.3223 -2.4056 25 1 10.4264 2.9190 -0.7060 26 1 8.1522 3.4559 -0.0578 27 6 5.1182 4.4306 -1.0428 28 7 4.7276 3.1685 -0.9992 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 5.2023 0.6386 -1.2481 33 1 3.8048 -0.4642 -1.2482 34 1 3.7244 1.0751 -2.1385 35 1 3.7227 1.0759 2.1400 36 1 3.8039 -0.4636 1.2503 37 1 5.2014 0.6384 1.2504 38 1 3.6648 5.4001 1.8578 39 1 3.1940 7.4639 0.3671 40 1 3.8965 9.8198 0.3630 41 1 6.2565 10.4082 -0.0027 42 1 7.9300 8.6466 -0.3749 43 1 11.5484 5.2615 -1.5790 44 1 5.7156 4.7918 -1.8669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:52 Heat of formation + Delta-G solvation = -53.460080 kcal Electronic energy + Delta-G solvation = -29738.550049 eV Core-core repulsion = 25621.600840 eV Total energy + Delta-G solvation = -4116.949210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.57360 -41.50175 -40.77677 -38.34498 -37.68737 -36.79131 -34.86434 -34.52504 -33.83953 -30.97385 -30.07766 -28.70245 -28.49723 -27.32346 -26.05118 -25.46533 -24.45593 -23.10434 -22.57476 -21.35790 -19.84468 -19.18471 -18.83659 -18.46174 -18.30281 -17.40075 -17.29891 -16.78332 -16.60559 -16.00621 -15.72837 -15.58773 -15.44077 -15.17845 -14.90620 -14.79727 -14.71725 -14.52547 -14.28830 -14.11179 -13.60966 -13.56382 -13.22241 -13.19540 -12.95434 -12.89107 -12.66198 -12.60199 -12.43071 -12.36331 -12.27969 -11.91463 -11.84819 -11.81871 -11.44577 -11.31495 -10.96981 -10.83191 -10.34160 -9.57781 -9.02854 -8.55234 -6.25260 -0.45900 0.01870 0.55006 0.66534 1.05237 1.24522 1.28313 1.42752 1.53090 2.19529 2.54643 2.66056 2.75827 2.97077 3.05595 3.08564 3.50175 3.58727 3.67226 3.72960 3.85257 3.98661 4.10588 4.20646 4.27821 4.31086 4.32402 4.53211 4.58890 4.63395 4.66263 4.72117 4.75999 4.80981 4.83820 4.88477 5.06190 5.11544 5.21090 5.23330 5.31917 5.37674 5.55982 5.67239 5.73427 5.84713 5.89505 6.18538 6.60998 6.80317 6.94299 7.53397 8.56302 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.003921 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.411333 B = 7138.697003 C = 9146.937595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.483 3.517 4 O -0.525 6.525 5 C 0.015 3.985 6 C -0.124 4.124 7 C -0.131 4.131 8 C 0.299 3.701 9 N -0.503 5.503 10 C 0.153 3.847 11 C -0.116 4.116 12 C -0.131 4.131 13 C -0.053 4.053 14 C -0.178 4.178 15 C -0.063 4.063 16 C -0.237 4.237 17 C 0.141 3.859 18 O -0.233 6.233 19 C -0.392 4.392 20 H 0.089 0.911 21 C 0.022 3.978 22 N -0.917 5.917 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.149 3.851 28 N -0.516 5.516 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.198 0.802 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.115 0.885 43 H 0.285 0.715 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.113 -8.928 3.987 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.325 3.675 4 O -0.413 6.413 5 C 0.012 3.988 6 C -0.181 4.181 7 C -0.189 4.189 8 C 0.031 3.969 9 N -0.215 5.215 10 C -0.013 4.013 11 C -0.120 4.120 12 C -0.134 4.134 13 C -0.071 4.071 14 C -0.196 4.196 15 C -0.081 4.081 16 C -0.256 4.256 17 C 0.091 3.909 18 O -0.140 6.140 19 C -0.469 4.469 20 H 0.106 0.894 21 C -0.177 4.177 22 N -0.557 5.557 23 Si 0.777 3.223 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.016 4.016 28 N -0.229 5.229 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.215 0.785 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.423 -9.919 3.926 22.160 hybrid contribution 0.919 0.958 -0.311 1.364 sum -18.504 -8.961 3.615 20.875 Atomic orbital electron populations 1.23607 0.74450 1.06036 1.02398 1.86463 1.25025 1.31263 1.83621 1.23212 0.90952 0.81755 0.71544 1.90670 1.67360 1.37536 1.45747 1.19231 0.88153 0.88587 1.02869 1.21741 1.02405 1.00914 0.93090 1.21875 1.01872 1.01936 0.93210 1.22612 0.91412 0.96344 0.86544 1.68061 1.21440 1.05834 1.26180 1.23751 0.90466 0.90851 0.96230 1.20473 0.99370 0.95457 0.96709 1.17747 0.90228 0.91396 1.14009 1.21158 0.98443 0.91658 0.95805 1.21164 0.96077 0.96284 1.06055 1.21307 0.92945 0.99130 0.94697 1.21303 1.01185 0.92512 1.10595 1.19514 0.88668 0.88496 0.94218 1.83520 1.18712 1.32796 1.78975 1.20704 0.83551 0.95641 1.46969 0.89391 1.25035 0.94009 1.03173 0.95491 1.69701 1.02960 1.36876 1.46204 0.85474 0.77998 0.79260 0.79598 1.18765 1.19414 1.19868 1.23340 0.93057 0.88031 0.97147 1.68049 1.12659 1.15755 1.26441 0.92043 0.92312 0.84234 0.90733 0.87881 0.92551 0.91641 0.87251 0.91081 0.78538 0.83225 0.82517 0.83733 0.86761 0.90564 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.08 10.37 -51.48 -0.53 -7.61 16 3 C 0.48 13.10 6.49 71.24 0.46 13.56 16 4 O -0.52 -17.65 15.25 21.98 0.34 -17.32 16 5 C 0.01 0.40 0.86 -53.67 -0.05 0.35 16 6 C -0.12 -2.87 7.59 71.98 0.55 -2.33 16 7 C -0.13 -2.85 8.30 71.98 0.60 -2.25 16 8 C 0.30 10.35 5.77 138.73 0.80 11.15 16 9 N -0.50 -17.38 9.25 -186.96 -1.73 -19.11 16 10 C 0.15 5.02 10.86 85.01 0.92 5.94 16 11 C -0.12 -4.26 5.28 -19.87 -0.10 -4.37 16 12 C -0.13 -4.79 5.53 -19.93 -0.11 -4.90 16 13 C -0.05 -1.49 9.55 22.47 0.21 -1.28 16 14 C -0.18 -4.60 10.03 22.26 0.22 -4.37 16 15 C -0.06 -1.91 10.03 22.29 0.22 -1.69 16 16 C -0.24 -9.57 9.16 22.36 0.20 -9.36 16 17 C 0.14 6.18 6.58 22.81 0.15 6.33 16 18 O -0.23 -11.97 7.04 -21.56 -0.15 -12.12 16 19 C -0.39 -22.09 9.95 67.92 0.68 -21.42 16 20 H 0.09 5.14 5.44 -2.91 -0.02 5.13 16 21 C 0.02 1.26 5.49 84.83 0.47 1.73 16 22 N -0.92 -53.64 13.96 21.61 0.30 -53.34 16 23 Si 0.95 45.76 28.62 68.60 1.96 47.72 16 24 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 27 C 0.15 5.93 10.12 85.01 0.86 6.79 16 28 N -0.52 -19.58 8.98 -186.96 -1.68 -21.26 16 29 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 1.83 8.04 -2.38 -0.02 1.81 16 33 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 34 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 35 H 0.06 1.51 8.01 -2.39 -0.02 1.49 16 36 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.20 4.99 8.06 -2.91 -0.02 4.96 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 42 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 43 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.16 6.47 7.79 -2.91 -0.02 6.44 16 Total: -1.00 -72.18 379.21 6.82 -65.37 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.03 Total: 22.18 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 7.28 Total: -4.51 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -3.11 Total: -93.71 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.35 Total: -37.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.72 kcal Total: -72.18 6.82 -65.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.905 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds