Wall clock time and date at job start Wed Apr 1 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.52167 * 2 1 4 4 O 1.21276 * 119.99334 * 246.44298 * 3 2 1 5 5 N 1.34775 * 119.99962 * 66.44428 * 3 2 1 6 6 C 1.47579 * 134.49260 * 175.04137 * 5 3 2 7 7 C 1.53940 * 86.11885 * 155.35631 * 6 5 3 8 8 N 1.46501 * 113.73829 * 137.95182 * 7 6 5 9 9 C 1.34782 * 119.99633 * 155.00597 * 8 7 6 10 10 O 1.21279 * 120.00377 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99669 * 180.02562 * 9 8 7 12 12 S 1.81003 * 109.46914 * 179.97438 * 11 9 8 13 13 C 1.76204 * 99.99915 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99886 * 359.97438 * 13 12 11 15 15 C 1.38803 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99810 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00088 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47142 * 120.00237 * 17 15 13 20 20 H 1.48503 * 109.47217 * 240.00035 * 17 15 13 21 21 C 1.47585 * 134.49455 * 355.04064 * 5 3 2 22 22 C 1.53182 * 109.57135 * 120.15499 * 2 1 3 23 23 C 1.53171 * 109.03539 * 176.92270 * 22 2 1 24 24 C 1.53094 * 109.16186 * 303.01325 * 23 22 2 25 25 O 1.42909 * 109.41142 * 57.61212 * 24 23 22 26 26 C 1.42901 * 114.09715 * 298.84171 * 25 24 23 27 27 H 1.09004 * 109.46537 * 64.84547 * 1 2 3 28 28 H 1.09001 * 109.47029 * 184.84191 * 1 2 3 29 29 H 1.09000 * 109.47508 * 304.84054 * 1 2 3 30 30 H 1.09004 * 113.76692 * 41.05488 * 6 5 3 31 31 H 1.09000 * 113.77230 * 269.66221 * 6 5 3 32 32 H 1.09001 * 113.74717 * 269.15710 * 7 6 5 33 33 H 0.96993 * 120.00351 * 335.00114 * 8 7 6 34 34 H 1.09004 * 109.47064 * 299.99294 * 11 9 8 35 35 H 1.08998 * 109.47528 * 59.99430 * 11 9 8 36 36 H 0.97000 * 120.00496 * 180.02562 * 16 15 13 37 37 H 1.08994 * 113.76632 * 90.33739 * 21 5 3 38 38 H 1.09002 * 113.76513 * 318.94509 * 21 5 3 39 39 H 1.09007 * 109.53917 * 296.78503 * 22 2 1 40 40 H 1.09001 * 109.54397 * 57.04894 * 22 2 1 41 41 H 1.09004 * 109.52394 * 183.11623 * 23 22 2 42 42 H 1.09000 * 109.52988 * 62.92211 * 23 22 2 43 43 H 1.08993 * 109.48508 * 297.62990 * 24 23 22 44 44 H 1.09001 * 109.47993 * 177.59425 * 24 23 22 45 45 H 1.08998 * 109.48119 * 301.17159 * 26 25 24 46 46 H 1.09004 * 109.47733 * 181.13857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.6319 1.8515 -0.9628 5 7 1.8192 2.2114 1.0699 6 6 2.2342 3.5766 1.4467 7 6 0.9830 3.5970 2.3432 8 7 1.2114 4.1948 3.6610 9 6 0.1829 4.7381 4.3419 10 8 -0.9315 4.7325 3.8635 11 6 0.4179 5.3535 5.6973 12 16 -1.1451 5.9925 6.3490 13 6 -0.5926 6.6349 7.8939 14 1 0.4484 6.5563 8.1702 15 6 -1.4955 7.2421 8.7558 16 7 -2.7644 7.3375 8.4193 17 14 -0.9099 7.9225 10.3940 18 1 0.5503 7.6906 10.5328 19 1 -1.1869 9.3803 10.4519 20 1 -1.6276 7.2380 11.4993 21 6 1.0749 2.0603 2.3354 22 6 2.0431 -0.7250 1.2480 23 6 3.5728 -0.7854 1.1972 24 6 4.0056 -1.4794 -0.0970 25 8 3.4695 -0.7724 -1.2173 26 6 2.0416 -0.7243 -1.2479 27 1 -0.3632 0.4369 -0.9303 28 1 -0.3633 -1.0240 0.0867 29 1 -0.3634 0.5871 0.8434 30 1 2.1966 4.2901 0.6235 31 1 3.1723 3.6135 2.0006 32 1 0.0942 3.9877 1.8476 33 1 2.1027 4.1995 4.0436 34 1 0.8130 4.5976 6.3760 35 1 1.1342 6.1701 5.6063 36 1 -3.3953 7.7621 9.0214 37 1 1.6724 1.6517 3.1503 38 1 0.1116 1.5631 2.2217 39 1 1.7291 -0.1825 2.1398 40 1 1.6389 -1.7370 1.2739 41 1 3.9439 -1.3482 2.0538 42 1 3.9784 0.2260 1.2213 43 1 3.6338 -2.5039 -0.1020 44 1 5.0938 -1.4872 -0.1589 45 1 1.6441 -1.7389 -1.2680 46 1 1.7151 -0.1880 -2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284882128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:18 Heat of formation + Delta-G solvation = -84.528395 kcal Electronic energy + Delta-G solvation = -27707.730374 eV Core-core repulsion = 23724.877893 eV Total energy + Delta-G solvation = -3982.852481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38758 -39.93107 -38.65521 -37.49263 -35.09656 -33.70053 -32.54499 -32.47609 -30.04719 -28.26374 -27.43346 -26.72882 -25.53932 -25.36675 -23.61847 -22.31049 -21.03318 -20.64080 -18.94896 -17.90133 -17.19134 -16.82657 -16.78620 -16.50432 -16.26110 -15.66847 -15.25654 -15.11166 -14.87602 -14.84800 -14.51026 -13.98421 -13.94817 -13.54652 -13.42051 -13.28685 -13.03618 -12.86690 -12.68964 -12.60152 -12.49846 -12.33345 -12.24634 -11.96643 -11.62999 -11.42612 -11.10778 -11.07229 -11.07018 -10.80512 -10.76428 -9.99823 -9.86345 -9.79726 -9.51676 -9.15756 -9.10295 -8.97998 -8.29853 -6.55950 -6.26639 -3.97644 2.32689 2.40228 2.89214 2.99649 3.18295 3.25205 3.29353 3.53129 3.63335 3.88592 4.09226 4.15283 4.16822 4.27625 4.38618 4.46496 4.61202 4.75534 4.81284 4.91841 4.96440 4.99089 5.04051 5.07763 5.08962 5.13885 5.21741 5.23459 5.30533 5.33872 5.38223 5.44641 5.51525 5.53295 5.64994 5.72073 5.78598 5.79607 5.82093 6.06067 6.41603 6.87219 7.35212 7.52560 7.55648 7.91913 8.30588 8.44309 9.19072 10.80801 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.001903 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.135890 B =14711.501601 C =14873.414049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.556 3.444 4 O -0.523 6.523 5 N -0.642 5.642 6 C 0.100 3.900 7 C 0.119 3.881 8 N -0.729 5.729 9 C 0.535 3.465 10 O -0.512 6.512 11 C -0.154 4.154 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.082 3.918 22 C -0.114 4.114 23 C -0.159 4.159 24 C 0.057 3.943 25 O -0.366 6.366 26 C 0.086 3.914 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.402 0.598 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -18.509 -14.940 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C 0.345 3.655 4 O -0.397 6.397 5 N -0.379 5.379 6 C -0.024 4.024 7 C 0.012 3.988 8 N -0.383 5.383 9 C 0.322 3.678 10 O -0.386 6.386 11 C -0.305 4.305 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.042 4.042 22 C -0.151 4.151 23 C -0.197 4.197 24 C -0.020 4.020 25 O -0.284 6.284 26 C 0.009 3.991 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.677 -18.260 -16.547 26.856 hybrid contribution 1.948 0.292 2.222 2.969 sum 12.625 -17.968 -14.325 26.219 Atomic orbital electron populations 1.21874 0.91521 1.03347 1.03509 1.21517 0.98058 0.92902 0.99038 1.19891 0.78597 0.85999 0.81017 1.90735 1.41125 1.74621 1.33264 1.49647 1.53476 1.16873 1.17951 1.23514 0.97579 0.83732 0.97543 1.22921 0.99576 0.91904 0.84422 1.45932 1.12034 1.61702 1.18644 1.20402 0.84229 0.76692 0.86480 1.90715 1.23007 1.55907 1.68939 1.23541 1.08202 1.03314 0.95434 1.85417 1.03607 1.74091 1.20232 1.22897 0.97492 1.44313 1.03662 0.90836 1.24999 0.94548 0.95369 0.98702 1.70019 1.02101 1.41363 1.36744 0.86112 0.78806 0.78647 0.81897 1.19611 1.20554 1.20554 1.23931 0.96957 0.97989 0.85323 1.21757 0.95774 1.01025 0.96587 1.22224 0.95998 1.02418 0.99038 1.22606 0.99318 0.94395 0.85712 1.88071 1.19676 1.75999 1.44662 1.22445 0.81491 0.98640 0.96519 0.91502 0.91029 0.91170 0.89169 0.89396 0.85358 0.76360 0.89066 0.89033 0.92192 0.89209 0.89088 0.90478 0.90459 0.90344 0.91209 0.93122 0.88881 0.92341 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.43 37.16 0.31 -0.66 16 2 C -0.11 -0.93 0.54 -155.52 -0.08 -1.01 16 3 C 0.56 6.33 5.45 -10.98 -0.06 6.27 16 4 O -0.52 -8.07 16.21 -8.28 -0.13 -8.21 16 5 N -0.64 -6.18 3.51 -178.54 -0.63 -6.81 16 6 C 0.10 0.88 8.59 -2.98 -0.03 0.85 16 7 C 0.12 1.17 4.43 -70.15 -0.31 0.86 16 8 N -0.73 -7.92 5.36 -55.34 -0.30 -8.22 16 9 C 0.54 8.82 7.85 -10.98 -0.09 8.73 16 10 O -0.51 -10.54 15.46 5.56 0.09 -10.46 16 11 C -0.15 -2.84 6.16 36.00 0.22 -2.62 16 12 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 13 C -0.54 -14.75 9.50 30.94 0.29 -14.46 16 14 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 15 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 17 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 C 0.08 0.67 6.13 -2.97 -0.02 0.65 16 22 C -0.11 -0.76 4.69 -26.55 -0.12 -0.88 16 23 C -0.16 -1.13 5.87 -26.59 -0.16 -1.29 16 24 C 0.06 0.43 6.84 37.21 0.25 0.69 16 25 O -0.37 -4.00 9.99 -49.07 -0.49 -4.49 16 26 C 0.09 0.76 5.07 37.20 0.19 0.95 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 5.48 -51.93 -0.28 0.20 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.13 1.52 7.46 -51.93 -0.39 1.13 16 33 H 0.40 3.17 8.73 -40.82 -0.36 2.81 16 34 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 0.61 7.74 -51.93 -0.40 0.21 16 38 H 0.09 0.71 5.99 -51.93 -0.31 0.40 16 39 H 0.08 0.49 5.57 -51.93 -0.29 0.20 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.64 7.39 -51.93 -0.38 0.26 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.96 7.96 -51.93 -0.41 0.54 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -36.41 382.22 -8.91 -45.32 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.02 Total: -0.18 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.31 Total: 0.01 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.19 Total: -39.86 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.54 Total: -23.15 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.41 -8.91 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.208 kcal (2) G-P(sol) polarization free energy of solvation -36.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds