Wall clock time and date at job start Wed Apr 1 2020 00:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.52167 * 2 1 4 4 O 1.21276 * 119.99334 * 246.44298 * 3 2 1 5 5 N 1.34775 * 119.99962 * 66.44428 * 3 2 1 6 6 C 1.47579 * 134.49260 * 175.04137 * 5 3 2 7 7 C 1.53940 * 86.11885 * 155.35631 * 6 5 3 8 8 N 1.46501 * 113.73829 * 137.95182 * 7 6 5 9 9 C 1.34782 * 119.99633 * 155.00597 * 8 7 6 10 10 O 1.21279 * 120.00377 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99669 * 180.02562 * 9 8 7 12 12 S 1.81003 * 109.46914 * 179.97438 * 11 9 8 13 13 C 1.76204 * 99.99915 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99886 * 359.97438 * 13 12 11 15 15 C 1.38803 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99810 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00088 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47142 * 120.00237 * 17 15 13 20 20 H 1.48503 * 109.47217 * 240.00035 * 17 15 13 21 21 C 1.47585 * 134.49455 * 355.04064 * 5 3 2 22 22 C 1.53182 * 109.57135 * 120.15499 * 2 1 3 23 23 C 1.53171 * 109.03539 * 176.92270 * 22 2 1 24 24 C 1.53094 * 109.16186 * 303.01325 * 23 22 2 25 25 O 1.42909 * 109.41142 * 57.61212 * 24 23 22 26 26 C 1.42901 * 114.09715 * 298.84171 * 25 24 23 27 27 H 1.09004 * 109.46537 * 64.84547 * 1 2 3 28 28 H 1.09001 * 109.47029 * 184.84191 * 1 2 3 29 29 H 1.09000 * 109.47508 * 304.84054 * 1 2 3 30 30 H 1.09004 * 113.76692 * 41.05488 * 6 5 3 31 31 H 1.09000 * 113.77230 * 269.66221 * 6 5 3 32 32 H 1.09001 * 113.74717 * 269.15710 * 7 6 5 33 33 H 0.96993 * 120.00351 * 335.00114 * 8 7 6 34 34 H 1.09004 * 109.47064 * 299.99294 * 11 9 8 35 35 H 1.08998 * 109.47528 * 59.99430 * 11 9 8 36 36 H 0.97000 * 120.00496 * 180.02562 * 16 15 13 37 37 H 1.08994 * 113.76632 * 90.33739 * 21 5 3 38 38 H 1.09002 * 113.76513 * 318.94509 * 21 5 3 39 39 H 1.09007 * 109.53917 * 296.78503 * 22 2 1 40 40 H 1.09001 * 109.54397 * 57.04894 * 22 2 1 41 41 H 1.09004 * 109.52394 * 183.11623 * 23 22 2 42 42 H 1.09000 * 109.52988 * 62.92211 * 23 22 2 43 43 H 1.08993 * 109.48508 * 297.62990 * 24 23 22 44 44 H 1.09001 * 109.47993 * 177.59425 * 24 23 22 45 45 H 1.08998 * 109.48119 * 301.17159 * 26 25 24 46 46 H 1.09004 * 109.47733 * 181.13857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.6319 1.8515 -0.9628 5 7 1.8192 2.2114 1.0699 6 6 2.2342 3.5766 1.4467 7 6 0.9830 3.5970 2.3432 8 7 1.2114 4.1948 3.6610 9 6 0.1829 4.7381 4.3419 10 8 -0.9315 4.7325 3.8635 11 6 0.4179 5.3535 5.6973 12 16 -1.1451 5.9925 6.3490 13 6 -0.5926 6.6349 7.8939 14 1 0.4484 6.5563 8.1702 15 6 -1.4955 7.2421 8.7558 16 7 -2.7644 7.3375 8.4193 17 14 -0.9099 7.9225 10.3940 18 1 0.5503 7.6906 10.5328 19 1 -1.1869 9.3803 10.4519 20 1 -1.6276 7.2380 11.4993 21 6 1.0749 2.0603 2.3354 22 6 2.0431 -0.7250 1.2480 23 6 3.5728 -0.7854 1.1972 24 6 4.0056 -1.4794 -0.0970 25 8 3.4695 -0.7724 -1.2173 26 6 2.0416 -0.7243 -1.2479 27 1 -0.3632 0.4369 -0.9303 28 1 -0.3633 -1.0240 0.0867 29 1 -0.3634 0.5871 0.8434 30 1 2.1966 4.2901 0.6235 31 1 3.1723 3.6135 2.0006 32 1 0.0942 3.9877 1.8476 33 1 2.1027 4.1995 4.0436 34 1 0.8130 4.5976 6.3760 35 1 1.1342 6.1701 5.6063 36 1 -3.3953 7.7621 9.0214 37 1 1.6724 1.6517 3.1503 38 1 0.1116 1.5631 2.2217 39 1 1.7291 -0.1825 2.1398 40 1 1.6389 -1.7370 1.2739 41 1 3.9439 -1.3482 2.0538 42 1 3.9784 0.2260 1.2213 43 1 3.6338 -2.5039 -0.1020 44 1 5.0938 -1.4872 -0.1589 45 1 1.6441 -1.7389 -1.2680 46 1 1.7151 -0.1880 -2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284882128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:17 Heat of formation + Delta-G solvation = -111.195351 kcal Electronic energy + Delta-G solvation = -27708.886740 eV Core-core repulsion = 23724.877893 eV Total energy + Delta-G solvation = -3984.008847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16137 -40.88110 -39.68621 -38.43652 -35.79950 -34.81946 -34.55594 -33.10532 -31.29223 -29.34923 -27.99571 -27.63289 -27.42622 -25.96448 -24.40937 -22.98486 -21.92708 -21.70062 -19.84185 -19.64927 -18.09244 -17.86875 -17.59978 -17.35491 -17.14122 -16.85850 -16.48431 -16.28725 -16.16224 -15.81313 -15.58534 -15.02565 -14.78283 -14.62869 -14.57064 -14.18694 -14.09180 -13.68638 -13.61490 -13.48011 -13.24233 -13.15425 -13.13075 -12.99509 -12.90825 -12.83851 -12.57227 -12.26290 -12.16109 -11.69130 -11.62550 -11.36823 -11.13969 -11.02758 -10.73606 -10.44413 -10.23249 -10.14788 -9.81295 -8.63066 -8.32921 -6.09769 1.26835 1.42724 1.45495 1.54168 1.56325 1.59431 1.70905 2.28488 2.37267 2.92713 3.01671 3.17998 3.34277 3.38615 3.49794 3.69833 3.74394 3.88772 3.95705 3.97848 4.08775 4.22273 4.30934 4.36618 4.38602 4.41192 4.45443 4.55001 4.57477 4.62156 4.67267 4.70461 4.74856 4.85100 4.89087 4.91741 4.96270 5.09596 5.19120 5.25001 5.41946 5.45027 6.22340 6.28273 6.46167 6.59318 7.07889 7.09243 7.23748 8.76265 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.001903 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.135890 B =14711.501601 C =14873.414049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.550 3.450 4 O -0.574 6.574 5 N -0.643 5.643 6 C 0.102 3.898 7 C 0.116 3.884 8 N -0.699 5.699 9 C 0.541 3.459 10 O -0.560 6.560 11 C -0.130 4.130 12 S -0.152 6.152 13 C -0.543 4.543 14 H 0.084 0.916 15 C 0.012 3.988 16 N -0.911 5.911 17 Si 0.997 3.003 18 H -0.256 1.256 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.092 3.908 22 C -0.111 4.111 23 C -0.156 4.156 24 C 0.050 3.950 25 O -0.400 6.400 26 C 0.083 3.917 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.421 0.579 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.270 0.730 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.108 -20.281 -13.359 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.341 3.659 4 O -0.452 6.452 5 N -0.379 5.379 6 C -0.021 4.021 7 C 0.009 3.991 8 N -0.353 5.353 9 C 0.327 3.673 10 O -0.437 6.437 11 C -0.282 4.282 12 S 0.075 5.925 13 C -0.691 4.691 14 H 0.102 0.898 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.180 1.180 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.031 4.031 22 C -0.148 4.148 23 C -0.193 4.193 24 C -0.027 4.027 25 O -0.319 6.319 26 C 0.006 3.994 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.260 0.740 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.584 -20.054 -14.953 28.002 hybrid contribution 1.461 0.804 1.612 2.320 sum 14.045 -19.250 -13.341 27.309 Atomic orbital electron populations 1.21885 0.90302 1.04826 1.02985 1.21552 0.98874 0.90880 0.99886 1.20519 0.77783 0.87190 0.80402 1.90706 1.43597 1.75840 1.35105 1.49676 1.53119 1.16937 1.18122 1.23588 0.98008 0.83408 0.97107 1.22891 0.99367 0.93264 0.83534 1.45552 1.11643 1.59772 1.18370 1.20057 0.84494 0.76768 0.85981 1.90712 1.25145 1.58080 1.69791 1.23382 1.03707 1.04380 0.96690 1.85593 1.10413 1.75217 1.21301 1.23237 0.97964 1.44042 1.03838 0.89811 1.26102 0.94572 0.95640 1.02926 1.70181 1.03612 1.42595 1.38403 0.84932 0.78975 0.77685 0.76528 1.17951 1.20218 1.20030 1.24004 0.97652 0.96264 0.85154 1.21807 0.95359 1.02103 0.95565 1.22202 0.96372 1.01224 0.99551 1.22802 0.99543 0.95228 0.85091 1.88021 1.20796 1.76856 1.46243 1.22519 0.80906 0.99902 0.96108 0.92450 0.88570 0.91264 0.90152 0.86873 0.87610 0.74024 0.86700 0.87134 0.92078 0.86686 0.88365 0.89845 0.88109 0.88147 0.93693 0.90974 0.88743 0.89612 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.43 71.98 0.61 -1.06 16 2 C -0.11 -1.65 0.54 -52.84 -0.03 -1.68 16 3 C 0.55 12.33 5.45 87.66 0.48 12.81 16 4 O -0.57 -18.32 16.21 10.21 0.17 -18.15 16 5 N -0.64 -11.56 3.51 -837.18 -2.94 -14.50 16 6 C 0.10 1.65 8.59 86.48 0.74 2.40 16 7 C 0.12 2.11 4.43 46.75 0.21 2.31 16 8 N -0.70 -13.50 5.36 -447.39 -2.40 -15.90 16 9 C 0.54 17.13 7.85 87.66 0.69 17.82 16 10 O -0.56 -23.25 15.46 -3.03 -0.05 -23.29 16 11 C -0.13 -4.60 6.16 71.24 0.44 -4.16 16 12 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 13 C -0.54 -29.79 9.50 67.96 0.65 -29.14 16 14 H 0.08 4.25 7.80 -2.91 -0.02 4.22 16 15 C 0.01 0.68 5.49 84.86 0.47 1.15 16 16 N -0.91 -54.72 13.22 21.65 0.29 -54.44 16 17 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 C 0.09 1.27 6.13 86.48 0.53 1.80 16 22 C -0.11 -1.13 4.69 30.71 0.14 -0.99 16 23 C -0.16 -1.85 5.87 30.68 0.18 -1.67 16 24 C 0.05 0.67 6.84 72.01 0.49 1.17 16 25 O -0.40 -8.61 9.99 -135.75 -1.36 -9.97 16 26 C 0.08 1.40 5.07 72.01 0.37 1.76 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.82 5.48 -2.39 -0.01 0.81 16 30 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.11 1.30 8.12 -2.39 -0.02 1.28 16 32 H 0.11 2.51 7.46 -2.39 -0.02 2.49 16 33 H 0.42 5.06 8.73 -92.71 -0.81 4.25 16 34 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.12 1.09 7.74 -2.39 -0.02 1.07 16 38 H 0.10 1.29 5.99 -2.39 -0.01 1.28 16 39 H 0.08 0.75 5.57 -2.38 -0.01 0.74 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.04 0.76 7.39 -2.39 -0.02 0.74 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.62 7.96 -2.38 -0.02 1.60 16 Total: -1.00 -83.45 382.22 0.72 -82.73 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.19 Total: 15.75 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.96 Total: 2.52 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -5.05 Total: -84.83 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.24 Total: -51.41 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -83.45 0.72 -82.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.468 kcal (2) G-P(sol) polarization free energy of solvation -83.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds