Wall clock time and date at job start Wed Apr 1 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32990 * 119.99789 * 2 1 4 4 C 1.50705 * 119.99789 * 179.97438 * 3 2 1 5 5 C 1.47107 * 120.00258 * 359.97438 * 3 2 1 6 6 O 1.21607 * 119.99699 * 262.24330 * 5 3 2 7 7 N 1.34773 * 119.99891 * 82.24139 * 5 3 2 8 8 C 1.47432 * 125.64655 * 355.30095 * 7 5 3 9 9 C 1.54919 * 104.82963 * 155.84830 * 8 7 5 10 10 C 1.55154 * 101.57916 * 37.00845 * 9 8 7 11 11 O 1.42896 * 110.87757 * 82.93270 * 10 9 8 12 12 C 1.53005 * 110.71997 * 206.13381 * 10 9 8 13 13 N 1.46496 * 109.47509 * 174.97481 * 12 10 9 14 14 C 1.34777 * 120.00115 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99921 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00241 * 179.97438 * 14 13 12 17 17 S 1.80995 * 109.47374 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00125 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99723 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99985 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99840 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99861 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47486 * 59.99740 * 22 20 18 24 24 H 1.48495 * 109.47217 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46960 * 299.99606 * 22 20 18 26 26 C 1.47021 * 125.64764 * 175.27017 * 7 5 3 27 27 H 1.08993 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46940 * 299.99947 * 1 2 3 29 29 H 1.08997 * 109.46671 * 60.00108 * 1 2 3 30 30 H 1.07995 * 120.00098 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47026 * 275.03185 * 4 3 2 32 32 H 1.08993 * 109.47284 * 35.03350 * 4 3 2 33 33 H 1.09007 * 109.46892 * 155.03557 * 4 3 2 34 34 H 1.08995 * 110.36660 * 274.68324 * 8 7 5 35 35 H 1.08992 * 110.37121 * 37.01189 * 8 7 5 36 36 H 1.08995 * 110.99820 * 155.07978 * 9 8 7 37 37 H 1.08993 * 111.00260 * 278.93493 * 9 8 7 38 38 H 0.96705 * 114.00569 * 184.93319 * 11 10 9 39 39 H 1.09001 * 109.47000 * 294.98127 * 12 10 9 40 40 H 1.09000 * 109.46827 * 54.97529 * 12 10 9 41 41 H 0.97000 * 119.99847 * 0.02562 * 13 12 10 42 42 H 1.09001 * 109.47475 * 300.00603 * 16 14 13 43 43 H 1.09001 * 109.46727 * 59.99874 * 16 14 13 44 44 H 0.97000 * 119.99800 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.88416 * 300.49807 * 26 7 5 46 46 H 1.08994 * 109.88109 * 61.51274 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2560 3.0231 -1.0443 7 7 0.9626 2.9308 1.1556 8 6 1.0233 2.2684 2.4714 9 6 0.9509 3.4239 3.5007 10 6 -0.0429 4.3946 2.8098 11 8 -1.3943 4.0054 3.0633 12 6 0.1988 5.8341 3.2688 13 7 -0.6700 6.7400 2.5134 14 6 -0.6297 8.0661 2.7505 15 8 0.1263 8.5095 3.5889 16 6 -1.5230 8.9981 1.9730 17 16 -1.2371 10.7008 2.5161 18 6 -2.3773 11.5497 1.4749 19 1 -2.9838 10.9957 0.7736 20 6 -2.4960 12.9302 1.5559 21 7 -1.7572 13.6052 2.4109 22 14 -3.7052 13.8299 0.4525 23 1 -5.0801 13.3354 0.7179 24 1 -3.6411 15.2869 0.7324 25 1 -3.3562 13.5828 -0.9695 26 6 0.3002 4.2337 1.3138 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 2.0470 -0.9353 0.0004 31 1 4.0419 1.0618 1.0244 32 1 4.0426 0.3102 -0.5890 33 1 4.0425 2.0834 -0.4332 34 1 0.1754 1.5952 2.5966 35 1 1.9609 1.7231 2.5787 36 1 0.5557 3.0735 4.4541 37 1 1.9265 3.8918 3.6321 38 1 -2.0514 4.5355 2.5918 39 1 -0.0248 5.9187 4.3322 40 1 1.2412 6.1008 3.0943 41 1 -1.2749 6.3853 1.8431 42 1 -1.2987 8.9137 0.9097 43 1 -2.5654 8.7311 2.1467 44 1 -1.8404 14.5700 2.4678 45 1 0.9726 5.0321 0.9997 46 1 -0.6115 4.2609 0.7170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286179905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:52 Heat of formation + Delta-G solvation = -105.466597 kcal Electronic energy + Delta-G solvation = -27341.230593 eV Core-core repulsion = 23357.470163 eV Total energy + Delta-G solvation = -3983.760430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95431 -39.54187 -38.51020 -35.93250 -35.65955 -34.26468 -32.44400 -31.62645 -30.68635 -30.10074 -28.87723 -26.58527 -25.49873 -25.03321 -23.67687 -22.18498 -20.93101 -20.49389 -18.76779 -18.24777 -17.47898 -16.92076 -16.38821 -16.26241 -16.01203 -15.49467 -15.44447 -14.96543 -14.81633 -14.65655 -14.30485 -14.13595 -13.97235 -13.82322 -13.38974 -13.22080 -13.19402 -13.12081 -12.91229 -12.62279 -12.52124 -12.38186 -12.19052 -12.00455 -11.93443 -11.80719 -11.34396 -11.06428 -11.04585 -10.78825 -10.65488 -10.18472 -9.84719 -9.51850 -9.40062 -9.11418 -9.08997 -9.04657 -8.27467 -6.52625 -6.23108 -3.94208 1.30270 2.22506 2.57935 2.90542 2.99221 3.23055 3.25812 3.28859 3.50646 3.59251 3.88194 4.01562 4.17117 4.19075 4.29355 4.41852 4.67810 4.72543 4.78578 4.96667 4.99468 5.06507 5.12063 5.12251 5.18826 5.20218 5.24618 5.30064 5.35900 5.41279 5.44763 5.50805 5.53905 5.55897 5.71065 5.77235 5.83758 5.96115 6.08993 6.10824 6.39050 7.03593 7.10306 7.49855 7.58055 7.74847 8.33474 8.48277 9.22171 10.84242 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.002017 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.793142 B =13878.808009 C =14401.403283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.167 4.167 4 C -0.104 4.104 5 C 0.574 3.426 6 O -0.532 6.532 7 N -0.611 5.611 8 C 0.104 3.896 9 C -0.117 4.117 10 C 0.112 3.888 11 O -0.543 6.543 12 C 0.106 3.894 13 N -0.742 5.742 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.080 3.920 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.381 0.619 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.395 0.605 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.269 0.731 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -30.881 -0.425 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.409 6.409 7 N -0.345 5.345 8 C -0.018 4.018 9 C -0.155 4.155 10 C 0.070 3.930 11 O -0.350 6.350 12 C -0.019 4.019 13 N -0.398 5.398 14 C 0.321 3.679 15 O -0.386 6.386 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.043 4.043 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.230 0.770 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.228 0.772 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.775 -30.090 0.798 31.089 hybrid contribution -2.243 0.312 -2.388 3.291 sum 5.532 -29.778 -1.590 30.329 Atomic orbital electron populations 1.21020 0.92642 1.03068 1.02794 1.23338 0.96388 0.96807 0.96654 1.21416 0.97014 0.92522 1.06015 1.20663 0.89472 1.03468 1.02481 1.18211 0.78183 0.85144 0.82154 1.90852 1.58246 1.61035 1.30740 1.48407 1.58815 1.19272 1.08030 1.22364 1.02569 0.95600 0.81304 1.22810 0.98685 0.94910 0.99074 1.22392 0.84145 0.93556 0.92894 1.86549 1.14367 1.61394 1.72649 1.21869 0.95991 0.86500 0.97568 1.45965 1.44090 1.07016 1.42756 1.20325 0.83073 0.81580 0.82915 1.90716 1.38920 1.75898 1.33079 1.23538 1.01319 1.02888 1.02758 1.85399 1.54692 0.90677 1.52468 1.22821 1.26045 0.94520 1.25083 0.90943 1.24995 0.96288 0.96475 0.95828 1.70004 1.38081 1.08070 1.34110 0.86215 0.80654 0.78270 0.80318 1.19927 1.20804 1.19918 1.22735 0.98897 0.86228 0.96415 0.91220 0.91064 0.91078 0.85605 0.90887 0.90836 0.91368 0.90548 0.90006 0.88070 0.88487 0.77003 0.89904 0.90257 0.77171 0.89111 0.89103 0.92102 0.89825 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.16 36.01 0.33 -0.55 16 2 C -0.11 -0.70 9.97 -36.12 -0.36 -1.06 16 3 C -0.17 -1.33 4.60 -102.84 -0.47 -1.80 16 4 C -0.10 -0.62 10.02 36.01 0.36 -0.26 16 5 C 0.57 6.31 6.05 -12.66 -0.08 6.23 16 6 O -0.53 -8.20 17.44 5.27 0.09 -8.11 16 7 N -0.61 -5.40 3.33 -171.91 -0.57 -5.98 16 8 C 0.10 0.63 6.37 -2.52 -0.02 0.61 16 9 C -0.12 -0.69 6.26 -24.58 -0.15 -0.85 16 10 C 0.11 0.86 0.92 -88.78 -0.08 0.78 16 11 O -0.54 -4.24 13.10 -35.23 -0.46 -4.70 16 12 C 0.11 1.07 4.73 -4.04 -0.02 1.05 16 13 N -0.74 -8.78 5.17 -60.29 -0.31 -9.09 16 14 C 0.53 9.44 7.85 -10.99 -0.09 9.36 16 15 O -0.51 -11.20 15.86 5.55 0.09 -11.11 16 16 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.08 0.72 5.65 -3.06 -0.02 0.70 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.46 6.67 -51.93 -0.35 0.12 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.08 0.44 7.11 -51.93 -0.37 0.07 16 35 H 0.08 0.37 7.61 -51.93 -0.40 -0.02 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.51 8.04 -51.93 -0.42 0.09 16 38 H 0.38 2.13 8.12 45.56 0.37 2.50 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 41 H 0.39 3.49 7.38 -40.82 -0.30 3.19 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.08 0.86 7.82 -51.93 -0.41 0.46 16 46 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -37.74 398.55 -8.31 -46.05 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.47 Total: 1.19 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.17 Total: -1.48 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.15 Total: -40.41 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.28 Total: -23.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.74 -8.31 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286179905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.419 kcal (2) G-P(sol) polarization free energy of solvation -37.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds