Wall clock time and date at job start Wed Apr 1 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53033 * 109.46080 * 234.85721 * 3 2 1 5 5 C 1.53192 * 109.31506 * 181.38587 * 4 3 2 6 6 N 1.46926 * 108.77682 * 305.37053 * 5 4 3 7 7 C 1.34773 * 120.63136 * 233.58588 * 6 5 4 8 8 O 1.21365 * 119.99824 * 7.19528 * 7 6 5 9 9 C 1.49321 * 120.00433 * 187.20048 * 7 6 5 10 10 O 1.21393 * 119.99528 * 6.66378 * 9 7 6 11 11 N 1.34774 * 120.00204 * 186.66508 * 9 7 6 12 12 C 1.39738 * 119.99896 * 175.23398 * 11 9 7 13 13 C 1.39000 * 120.00624 * 35.07998 * 12 11 9 14 14 C 1.37965 * 119.99276 * 180.02562 * 13 12 11 15 15 C 1.38943 * 120.00951 * 359.97438 * 14 13 12 16 16 O 1.35754 * 119.99487 * 180.02562 * 15 14 13 17 17 C 1.34798 * 116.99952 * 354.79846 * 16 15 14 18 18 H 1.07997 * 120.00140 * 5.01904 * 17 16 15 19 19 C 1.38654 * 120.00056 * 185.02083 * 17 16 15 20 20 N 1.31558 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47561 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46847 * 120.00566 * 21 19 17 24 24 H 1.48501 * 109.47445 * 239.99897 * 21 19 17 25 25 C 1.38937 * 120.00787 * 0.27390 * 15 14 13 26 26 C 1.37970 * 120.01061 * 359.45334 * 25 15 14 27 27 C 1.46921 * 118.73898 * 53.85350 * 6 5 4 28 28 C 1.53041 * 109.46114 * 354.93223 * 3 2 1 29 29 H 4.44647 * 5.63535 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.45560 * 114.88459 * 3 2 1 31 31 H 1.09000 * 109.49693 * 61.43387 * 4 3 2 32 32 H 1.09000 * 109.52952 * 301.35678 * 4 3 2 33 33 H 1.08999 * 109.58922 * 185.57995 * 5 4 3 34 34 H 1.09005 * 109.69965 * 65.22212 * 5 4 3 35 35 H 0.96999 * 120.00194 * 355.23945 * 11 9 7 36 36 H 1.07998 * 120.00326 * 359.97438 * 13 12 11 37 37 H 1.08005 * 119.99900 * 179.97438 * 14 13 12 38 38 H 0.96999 * 120.00162 * 179.97438 * 20 19 17 39 39 H 1.07997 * 119.99199 * 179.70600 * 25 15 14 40 40 H 1.07998 * 120.00101 * 180.27607 * 26 25 15 41 41 H 1.09007 * 109.58817 * 65.93072 * 27 6 5 42 42 H 1.08998 * 109.59026 * 186.35321 * 27 6 5 43 43 H 1.09008 * 109.49346 * 298.56219 * 28 3 2 44 44 H 1.08999 * 109.50015 * 58.62728 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1555 0.8314 1.1799 5 6 4.6871 0.8586 1.1567 6 7 5.1842 -0.5238 1.1327 7 6 6.0786 -0.9479 2.0473 8 8 6.3825 -0.2297 2.9772 9 6 6.6958 -2.3013 1.9166 10 8 6.4861 -2.9708 0.9258 11 7 7.4855 -2.7796 2.8984 12 6 7.9821 -4.0835 2.8228 13 6 8.3232 -4.6271 1.5898 14 6 8.8131 -5.9147 1.5154 15 6 8.9659 -6.6680 2.6729 16 8 9.4484 -7.9347 2.5994 17 6 9.6580 -8.4393 1.3671 18 1 9.5205 -7.8143 0.4971 19 6 10.0499 -9.7607 1.2164 20 7 10.2168 -10.5222 2.2761 21 14 10.3395 -10.4601 -0.4913 22 1 10.0853 -9.4072 -1.5072 23 1 11.7450 -10.9263 -0.6034 24 1 9.4193 -11.6027 -0.7210 25 6 8.6202 -6.1267 3.9049 26 6 8.1356 -4.8371 3.9806 27 6 4.6923 -1.4334 0.0889 28 6 3.1566 -1.4364 0.1275 29 1 -1.0501 -0.0003 0.0000 30 1 3.0089 0.4333 -0.9324 31 1 2.8137 0.3850 2.1137 32 1 2.7725 1.8489 1.1015 33 1 5.0571 1.3645 2.0484 34 1 5.0318 1.3863 0.2674 35 1 7.7090 -2.2187 3.6576 36 1 8.2040 -4.0418 0.6900 37 1 9.0777 -6.3373 0.5573 38 1 10.4907 -11.4468 2.1707 39 1 8.7347 -6.7141 4.8039 40 1 7.8711 -4.4150 4.9388 41 1 5.0354 -1.0895 -0.8869 42 1 5.0659 -2.4402 0.2758 43 1 2.8147 -1.8616 1.0712 44 1 2.7737 -2.0333 -0.7003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329303473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:48 Heat of formation + Delta-G solvation = 6.465256 kcal Electronic energy + Delta-G solvation = -28415.292328 eV Core-core repulsion = 24300.941676 eV Total energy + Delta-G solvation = -4114.350652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -41.24307 -39.64146 -38.64873 -38.00545 -36.70858 -34.83991 -33.93508 -32.24813 -31.72135 -31.43317 -30.29840 -28.46104 -26.64649 -25.42585 -24.34078 -23.53735 -22.40258 -21.69230 -20.74834 -19.93161 -18.59979 -18.23710 -17.84035 -17.24230 -17.04664 -16.29774 -16.18416 -15.42669 -15.30334 -14.78883 -14.57402 -14.49244 -14.36283 -14.30317 -14.05277 -13.72409 -13.58840 -13.33294 -13.06147 -12.73606 -12.63483 -12.14635 -11.86693 -11.82115 -11.66955 -11.62366 -11.55352 -11.46246 -11.22095 -11.09199 -10.79065 -10.46178 -10.43202 -10.41111 -9.79817 -9.45939 -9.09900 -9.06334 -8.77850 -8.28944 -7.04759 -6.50447 -4.07673 1.18777 2.07735 2.12533 2.29688 2.47407 2.50425 3.07932 3.12248 3.15420 3.18007 3.37004 3.91496 3.93224 4.20641 4.40430 4.49763 4.52390 4.66501 4.75530 4.90336 5.03849 5.04726 5.19423 5.22961 5.33062 5.39841 5.50029 5.58953 5.62173 5.67224 5.68243 5.73990 5.91406 6.01195 6.06834 6.19201 6.21703 6.62890 6.70113 6.83638 6.91224 6.97796 7.22252 7.28353 7.32794 7.35953 7.64344 7.67113 7.94417 8.03908 8.95178 9.63342 10.67158 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002168 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.719960 B =12911.566107 C =13975.738731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.018 3.982 4 C -0.124 4.124 5 C 0.108 3.892 6 N -0.583 5.583 7 C 0.514 3.486 8 O -0.525 6.525 9 C 0.498 3.502 10 O -0.501 6.501 11 N -0.619 5.619 12 C 0.019 3.981 13 C -0.059 4.059 14 C -0.222 4.222 15 C 0.150 3.850 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.178 4.178 26 C -0.083 4.083 27 C 0.063 3.937 28 C -0.125 4.125 29 H 0.216 0.784 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.270 0.730 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.071 0.929 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 21.271 -3.672 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.000 4.000 4 C -0.162 4.162 5 C -0.014 4.014 6 N -0.317 5.317 7 C 0.296 3.704 8 O -0.401 6.401 9 C 0.281 3.719 10 O -0.379 6.379 11 N -0.264 5.264 12 C -0.073 4.073 13 C -0.079 4.079 14 C -0.242 4.242 15 C 0.096 3.904 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.198 4.198 26 C -0.104 4.104 27 C -0.058 4.058 28 C -0.164 4.164 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.169 0.831 43 H 0.090 0.910 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.122 20.779 -3.638 24.843 hybrid contribution -0.176 0.055 -0.594 0.622 sum -13.298 20.834 -4.233 25.076 Atomic orbital electron populations 1.24923 0.95927 1.00709 1.00947 1.23019 0.94199 1.00455 1.00370 1.18376 0.84563 0.97322 0.99779 1.21927 0.94907 1.00811 0.98531 1.21747 0.93435 0.82219 1.04022 1.47950 1.41365 1.12583 1.29818 1.20089 0.80418 0.87476 0.82383 1.90747 1.61531 1.56832 1.30990 1.20033 0.80442 0.87003 0.84443 1.90461 1.59186 1.59122 1.29094 1.42871 1.46072 1.13734 1.23714 1.17243 1.10165 0.84878 0.95022 1.20847 0.95631 0.95200 0.96202 1.21096 1.08839 0.95078 0.99184 1.19450 0.91332 0.86362 0.93282 1.83965 1.69624 1.22332 1.31640 1.21412 1.47520 0.95563 0.82200 0.88818 1.25318 0.96533 0.95006 0.99689 1.70045 1.42831 1.07548 1.28984 0.85629 0.78365 0.79221 0.80139 1.18985 1.20115 1.20085 1.20009 1.07985 0.95487 0.96282 1.20392 1.00485 0.93271 0.96206 1.23157 0.93067 0.99076 0.90456 1.22067 0.95631 0.95024 1.03646 0.76671 0.88765 0.90834 0.90050 0.88288 0.90596 0.74902 0.85541 0.85012 0.91967 0.85840 0.86442 0.90889 0.83101 0.91034 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.18 -1.56 12.56 -37.12 -0.47 -2.03 16 3 C 0.02 0.13 2.52 -93.37 -0.24 -0.10 16 4 C -0.12 -0.87 5.32 -26.62 -0.14 -1.01 16 5 C 0.11 0.84 6.44 -3.71 -0.02 0.82 16 6 N -0.58 -5.92 2.97 -173.06 -0.51 -6.44 16 7 C 0.51 6.44 7.74 -11.65 -0.09 6.35 16 8 O -0.52 -7.31 15.92 5.48 0.09 -7.22 16 9 C 0.50 6.99 7.60 -11.65 -0.09 6.90 16 10 O -0.50 -7.74 10.55 5.46 0.06 -7.68 16 11 N -0.62 -8.74 5.32 -10.27 -0.05 -8.79 16 12 C 0.02 0.33 6.30 -83.69 -0.53 -0.20 16 13 C -0.06 -1.12 8.69 -39.40 -0.34 -1.46 16 14 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 15 C 0.15 3.52 6.65 -39.06 -0.26 3.26 16 16 O -0.17 -4.79 9.75 0.13 0.00 -4.79 16 17 C -0.39 -10.68 9.48 30.89 0.29 -10.39 16 18 H 0.09 2.38 5.19 -52.49 -0.27 2.10 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 21 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 25 C -0.18 -3.57 9.98 -39.42 -0.39 -3.96 16 26 C -0.08 -1.41 9.96 -39.40 -0.39 -1.81 16 27 C 0.06 0.59 6.05 -3.49 -0.02 0.57 16 28 C -0.13 -1.04 5.33 -26.39 -0.14 -1.18 16 29 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.84 7.00 -51.93 -0.36 0.48 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.41 4.96 8.30 -40.82 -0.34 4.62 16 36 H 0.13 2.29 6.21 -52.49 -0.33 1.96 16 37 H 0.13 2.84 5.63 -52.48 -0.30 2.55 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.15 1.77 4.20 -55.38 -0.23 1.54 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -31.69 373.34 -6.97 -38.66 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.19 Total: 8.91 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.72 Total: -9.47 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.19 Total: -39.20 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.15 Total: -19.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.69 -6.97 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329303473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.128 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds