Wall clock time and date at job start Wed Apr 1 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00224 * 2 1 4 4 O 1.20833 * 119.99600 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00134 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47178 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47117 * 179.97438 * 6 5 3 8 8 C 1.36688 * 120.00192 * 263.03307 * 7 6 5 9 9 H 1.08002 * 120.00247 * 1.12194 * 8 7 6 10 10 C 1.39169 * 119.99907 * 181.11983 * 8 7 6 11 11 N 1.31278 * 120.00217 * 84.76402 * 10 8 7 12 12 Si 1.86800 * 120.00070 * 264.76077 * 10 8 7 13 13 H 1.48498 * 109.47071 * 5.01527 * 12 10 8 14 14 H 1.48503 * 109.47129 * 125.01529 * 12 10 8 15 15 H 1.48501 * 109.47194 * 245.01311 * 12 10 8 16 16 C 1.34780 * 119.99744 * 83.03537 * 7 6 5 17 17 O 1.21561 * 119.99724 * 185.99844 * 16 7 6 18 18 C 1.48065 * 119.99903 * 5.72033 * 16 7 6 19 19 C 1.40385 * 119.25252 * 173.58952 * 18 16 7 20 20 C 1.36440 * 119.81858 * 179.97438 * 19 18 16 21 21 C 1.50699 * 120.86718 * 179.97438 * 20 19 18 22 22 C 1.40816 * 118.26145 * 359.97438 * 20 19 18 23 23 C 1.40389 * 121.26967 * 179.97438 * 22 20 19 24 24 C 1.36160 * 119.65597 * 179.97438 * 23 22 20 25 25 C 1.39415 * 120.91246 * 0.07922 * 24 23 22 26 26 C 1.36020 * 121.07523 * 359.93233 * 25 24 23 27 27 C 1.40816 * 119.73599 * 0.02806 * 26 25 24 28 28 N 1.31975 * 119.25758 * 353.31222 * 18 16 7 29 29 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47107 * 299.99867 * 1 2 3 31 31 H 1.09001 * 109.47434 * 59.99145 * 1 2 3 32 32 H 1.08996 * 109.47464 * 60.00046 * 5 3 2 33 33 H 1.09001 * 109.47029 * 300.00192 * 5 3 2 34 34 H 1.09002 * 109.47338 * 60.00203 * 6 5 3 35 35 H 1.08998 * 109.47243 * 299.99385 * 6 5 3 36 36 H 0.96996 * 120.00361 * 184.90907 * 11 10 8 37 37 H 1.08006 * 120.09111 * 359.97438 * 19 18 16 38 38 H 1.09002 * 109.47264 * 90.00365 * 21 20 19 39 39 H 1.09007 * 109.46882 * 209.99408 * 21 20 19 40 40 H 1.09000 * 109.47216 * 329.99670 * 21 20 19 41 41 H 1.07998 * 120.17304 * 359.97438 * 23 22 20 42 42 H 1.07994 * 119.54314 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.46635 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.13008 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1382 2.9971 1.1753 9 1 5.5942 3.0636 2.1059 10 6 7.5266 3.0933 1.1726 11 7 8.1041 4.2496 0.9424 12 14 8.5685 1.5771 1.4964 13 1 7.6886 0.3858 1.6052 14 1 9.5250 1.3854 0.3768 15 1 9.3202 1.7547 2.7648 16 6 6.1435 2.7131 -1.1585 17 8 7.3582 2.6670 -1.1480 18 6 5.4112 2.6472 -2.4436 19 6 6.1335 2.6742 -3.6470 20 6 5.4704 2.6136 -4.8379 21 6 6.2221 2.6415 -6.1437 22 6 4.0653 2.5242 -4.8148 23 6 3.3196 2.4589 -6.0025 24 6 1.9621 2.3725 -5.9419 25 6 1.3000 2.3497 -4.7152 26 6 1.9892 2.4115 -3.5441 27 6 3.3943 2.5006 -3.5645 28 7 4.0944 2.5587 -2.4318 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 3.6108 3.2356 0.8907 35 1 3.6102 3.2367 -0.8893 36 1 9.0698 4.3035 0.8698 37 1 7.2113 2.7429 -3.6303 38 1 6.4688 1.6228 -6.4428 39 1 5.6012 3.1049 -6.9105 40 1 7.1398 3.2170 -6.0224 41 1 3.8202 2.4769 -6.9594 42 1 1.3904 2.3220 -6.8567 43 1 0.2224 2.2812 -4.6943 44 1 1.4607 2.3922 -2.6025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329667761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:18 Heat of formation + Delta-G solvation = -38.893562 kcal Electronic energy + Delta-G solvation = -30670.708827 eV Core-core repulsion = 26554.391269 eV Total energy + Delta-G solvation = -4116.317558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.04568 -41.40115 -40.17582 -37.74468 -37.59370 -36.46671 -35.57972 -34.79149 -32.13507 -31.51722 -31.19630 -28.80017 -28.54060 -27.46873 -25.71463 -24.50667 -24.32294 -22.29353 -21.89115 -21.39901 -19.36492 -18.92045 -18.68076 -18.12741 -17.66059 -17.59024 -17.14021 -16.79264 -16.23713 -16.13986 -15.85116 -15.45528 -15.18161 -15.04483 -14.92574 -14.51231 -14.29182 -14.21937 -14.11168 -13.92879 -13.86481 -13.55276 -13.40609 -13.04110 -12.94676 -12.83129 -12.65736 -12.59382 -12.36712 -12.19061 -12.12703 -11.90761 -11.72680 -11.55551 -11.05489 -10.93429 -10.45864 -10.10724 -9.67190 -9.56830 -9.08469 -8.99104 -5.51929 -0.64990 -0.17136 1.05030 1.19084 1.27751 1.47011 1.54400 1.66079 1.77889 2.10414 2.47187 2.78043 2.98254 3.27690 3.33526 3.64379 3.75949 3.89622 3.93532 4.02563 4.08436 4.26452 4.29993 4.32819 4.35281 4.36996 4.45567 4.55756 4.57534 4.61652 4.72409 4.75630 4.81303 4.88706 5.07003 5.09336 5.17134 5.20364 5.21280 5.33109 5.40281 5.50689 5.56053 5.71227 5.81743 6.03548 6.51926 6.74859 6.89591 7.13496 7.38322 7.96003 8.26643 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008975 B = 0.005518 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.911329 B = 5073.450107 C = 7601.401056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.484 3.516 4 O -0.525 6.525 5 C -0.103 4.103 6 C 0.109 3.891 7 N -0.366 5.366 8 C -0.491 4.491 9 H 0.109 0.891 10 C 0.188 3.812 11 N -0.718 5.718 12 Si 0.900 3.100 13 H -0.268 1.268 14 H -0.292 1.292 15 H -0.269 1.269 16 C 0.381 3.619 17 O -0.627 6.627 18 C 0.135 3.865 19 C -0.164 4.164 20 C -0.025 4.025 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.088 4.088 26 C -0.123 4.123 27 C 0.108 3.892 28 N -0.489 5.489 29 H 0.131 0.869 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.290 0.710 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.156 0.844 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 -6.618 -13.405 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.328 3.672 4 O -0.414 6.414 5 C -0.142 4.142 6 C -0.014 4.014 7 N -0.076 5.076 8 C -0.610 4.610 9 H 0.127 0.873 10 C -0.047 4.047 11 N -0.340 5.340 12 Si 0.722 3.278 13 H -0.193 1.193 14 H -0.218 1.218 15 H -0.195 1.195 16 C 0.179 3.821 17 O -0.521 6.521 18 C -0.013 4.013 19 C -0.185 4.185 20 C -0.032 4.032 21 C -0.167 4.167 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.139 4.139 25 C -0.107 4.107 26 C -0.142 4.142 27 C -0.015 4.015 28 N -0.204 5.204 29 H 0.150 0.850 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.174 0.826 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.888 -6.133 -12.600 19.730 hybrid contribution 1.214 -0.233 0.121 1.242 sum -12.675 -6.366 -12.479 18.892 Atomic orbital electron populations 1.23575 0.74585 1.05676 1.02726 1.86515 1.25297 1.32672 1.83914 1.23390 0.91365 0.81355 0.71104 1.90611 1.67432 1.36884 1.46464 1.21416 0.87857 0.99821 1.05103 1.21981 0.79804 0.95199 1.04456 1.43810 1.05801 1.52472 1.05502 1.18925 0.90458 1.65198 0.86445 0.87343 1.25519 0.97935 0.95843 0.85366 1.70577 1.14104 1.29276 1.20035 0.86589 0.78843 0.85694 0.76681 1.19265 1.21804 1.19458 1.17558 0.86925 0.94629 0.82980 1.90402 1.13935 1.63600 1.84122 1.21437 0.89751 0.95655 0.94496 1.21483 1.01335 1.03792 0.91939 1.20476 0.92866 0.93485 0.96392 1.20927 0.99974 1.04195 0.91585 1.18998 0.93711 1.04888 0.95259 1.21332 0.94709 0.98055 0.96826 1.21309 0.94306 0.99427 0.98840 1.21244 1.01540 0.96518 0.91436 1.20873 0.90763 1.02626 0.99964 1.19487 0.95187 0.98140 0.88670 1.68377 1.06606 1.16640 1.28783 0.85046 0.91837 0.91647 0.88708 0.87745 0.92036 0.86103 0.89841 0.85625 0.88761 0.88287 0.90682 0.82223 0.81776 0.82645 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.58 10.57 -51.40 -0.54 -11.12 16 3 C 0.48 16.60 7.96 71.23 0.57 17.17 16 4 O -0.52 -19.48 15.27 21.94 0.34 -19.15 16 5 C -0.10 -3.98 5.55 29.84 0.17 -3.82 16 6 C 0.11 4.92 4.25 86.38 0.37 5.28 16 7 N -0.37 -19.37 2.63 -638.61 -1.68 -21.05 16 8 C -0.49 -27.36 9.48 84.16 0.80 -26.57 16 9 H 0.11 5.86 8.01 -2.91 -0.02 5.84 16 10 C 0.19 10.45 3.00 85.00 0.25 10.71 16 11 N -0.72 -40.54 13.55 21.70 0.29 -40.25 16 12 Si 0.90 44.39 28.26 68.60 1.94 46.33 16 13 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.38 20.88 7.50 86.85 0.65 21.53 16 17 O -0.63 -37.76 12.32 -3.91 -0.05 -37.81 16 18 C 0.14 6.34 6.59 42.25 0.28 6.62 16 19 C -0.16 -6.74 9.22 22.37 0.21 -6.53 16 20 C -0.02 -0.78 5.92 -19.65 -0.12 -0.89 16 21 C -0.11 -2.27 9.59 71.24 0.68 -1.58 16 22 C -0.13 -3.85 5.75 -21.21 -0.12 -3.97 16 23 C -0.09 -1.90 9.31 22.31 0.21 -1.69 16 24 C -0.12 -2.12 9.96 22.07 0.22 -1.90 16 25 C -0.09 -1.84 9.94 22.04 0.22 -1.62 16 26 C -0.12 -3.68 9.99 22.38 0.22 -3.45 16 27 C 0.11 3.86 6.61 40.46 0.27 4.13 16 28 N -0.49 -20.58 4.48 -177.83 -0.80 -21.37 16 29 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.09 3.83 7.05 -2.39 -0.02 3.81 16 33 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.06 2.76 7.91 -2.39 -0.02 2.74 16 35 H 0.12 5.59 4.98 -14.61 -0.07 5.52 16 36 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.13 5.37 7.62 -2.91 -0.02 5.34 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.45 6.51 -2.38 -0.02 1.44 16 40 H 0.07 1.54 8.10 -2.39 -0.02 1.53 16 41 H 0.16 2.19 6.43 -2.91 -0.02 2.17 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.12 3.74 7.59 -2.91 -0.02 3.71 16 Total: -1.00 -74.67 368.86 6.54 -68.13 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.98 Total: 21.17 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.07 Total: 15.13 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.18 Total: -82.68 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -0.26 Total: -68.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.94 Total: 46.33 kcal Total: -74.67 6.54 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329667761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.235 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds