Wall clock time and date at job start Wed Apr 1 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99833 * 2 1 4 4 C 1.52997 * 109.47113 * 124.99750 * 3 2 1 5 5 C 1.50706 * 109.47113 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99516 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00032 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.60493 * 0.02562 * 7 5 4 9 9 C 1.53196 * 108.77131 * 233.53550 * 8 7 5 10 10 C 1.53039 * 109.33748 * 305.41286 * 9 8 7 11 11 H 1.08995 * 109.45917 * 301.32981 * 10 9 8 12 12 N 1.46502 * 109.46078 * 181.35664 * 10 9 8 13 13 C 1.34767 * 120.00098 * 84.99742 * 12 10 9 14 14 O 1.21286 * 119.99767 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00145 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.47004 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00011 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00247 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47568 * 89.99782 * 21 19 17 23 23 H 1.48504 * 109.47531 * 210.00192 * 21 19 17 24 24 H 1.48503 * 109.47332 * 330.00066 * 21 19 17 25 25 C 1.53045 * 109.53694 * 61.35198 * 10 9 8 26 26 H 1.08993 * 109.49877 * 58.58562 * 25 10 9 27 27 O 1.42905 * 109.49618 * 178.65020 * 25 10 9 28 28 C 1.46928 * 120.62770 * 180.02562 * 7 5 4 29 29 H 1.08005 * 120.00064 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00156 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00443 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46723 * 4.99454 * 3 2 1 33 33 H 1.09003 * 109.46884 * 244.99925 * 3 2 1 34 34 H 1.08994 * 109.47255 * 60.00123 * 4 3 2 35 35 H 1.08998 * 109.47086 * 299.99515 * 4 3 2 36 36 H 1.08996 * 109.56502 * 113.76244 * 8 7 5 37 37 H 1.09001 * 109.61713 * 353.33665 * 8 7 5 38 38 H 1.09002 * 109.49815 * 185.44599 * 9 8 7 39 39 H 1.09000 * 109.49595 * 65.37996 * 9 8 7 40 40 H 0.97002 * 119.99861 * 265.00277 * 12 10 9 41 41 H 1.09002 * 109.47332 * 300.00177 * 15 13 12 42 42 H 1.08994 * 109.47475 * 60.00500 * 15 13 12 43 43 H 0.97008 * 120.00170 * 180.02562 * 20 19 17 44 44 H 0.96695 * 113.99845 * 179.97438 * 27 25 10 45 45 H 1.08997 * 109.58597 * 6.64243 * 28 7 5 46 46 H 1.09004 * 109.58075 * 246.21993 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4645 0.3208 7 7 4.7060 2.8868 2.1370 8 6 4.9817 1.8949 3.1853 9 6 4.8329 2.5687 4.5531 10 6 5.7294 3.8078 4.6078 11 1 6.7649 3.5147 4.4348 12 7 5.6137 4.4361 5.9262 13 6 6.3740 3.9996 6.9497 14 8 7.1543 3.0868 6.7792 15 6 6.2546 4.6455 8.3060 16 16 7.3971 3.8439 9.4586 17 6 7.0566 4.7685 10.9195 18 1 6.3212 5.5592 10.8990 19 6 7.7335 4.4806 12.0965 20 7 7.4795 5.1716 13.1877 21 14 9.0049 3.1126 12.1322 22 1 10.3395 3.6680 11.7924 23 1 9.0492 2.5132 13.4902 24 1 8.6367 2.0686 11.1422 25 6 5.2940 4.8026 3.5293 26 1 4.2511 5.0771 3.6872 27 8 6.1115 5.9725 3.6016 28 6 5.4486 4.1545 2.1502 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5068 1.0921 35 1 2.4771 1.2358 2.1130 36 1 5.9981 1.5175 3.0726 37 1 4.2729 1.0708 3.1049 38 1 5.1285 1.8709 5.3365 39 1 3.7943 2.8642 4.7019 40 1 4.9899 5.1663 6.0624 41 1 6.5017 5.7042 8.2273 42 1 5.2336 4.5369 8.6716 43 1 7.9528 4.9707 14.0102 44 1 5.8912 6.6474 2.9451 45 1 5.0476 4.8208 1.3864 46 1 6.5033 3.9622 1.9531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345758810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:30 Heat of formation + Delta-G solvation = -108.172956 kcal Electronic energy + Delta-G solvation = -27118.206943 eV Core-core repulsion = 23134.329157 eV Total energy + Delta-G solvation = -3983.877787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92421 -39.55229 -38.13867 -36.27902 -35.82712 -34.54436 -32.44319 -31.80282 -31.52381 -30.10710 -28.95858 -25.85478 -25.55564 -24.23713 -23.54307 -21.29321 -20.46863 -20.26201 -19.44825 -17.97091 -17.79243 -17.45871 -16.61201 -16.43973 -16.34538 -16.13055 -15.43401 -15.02985 -14.97399 -14.76808 -14.51634 -14.18986 -13.89227 -13.69784 -13.47023 -13.37037 -13.22213 -12.96211 -12.80119 -12.60657 -12.47030 -12.22113 -12.09652 -11.63213 -11.52903 -11.46363 -11.27640 -11.03603 -11.00648 -10.65793 -10.57676 -10.25348 -9.86684 -9.78007 -9.58340 -9.11122 -9.04958 -8.98865 -8.50776 -6.92045 -6.29200 -4.00909 1.80597 2.17280 2.44740 2.74121 2.94822 3.26427 3.33185 3.49445 3.61595 3.67893 3.96675 4.32443 4.33585 4.37880 4.43521 4.50815 4.59986 4.64266 4.71038 4.75047 4.77722 4.85072 4.95377 5.05469 5.09847 5.15686 5.22396 5.31164 5.33894 5.38339 5.43264 5.51375 5.63501 5.68931 5.76420 5.87004 5.96601 6.02321 6.18270 6.31450 6.49083 6.87268 7.21932 7.58958 7.70194 7.93810 8.41515 8.47030 9.16917 10.80020 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.001997 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.949082 B =14018.792638 C =14759.310074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.517 3.483 6 O -0.542 6.542 7 N -0.611 5.611 8 C 0.107 3.893 9 C -0.146 4.146 10 C 0.157 3.843 11 H 0.097 0.903 12 N -0.724 5.724 13 C 0.535 3.465 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.087 3.913 26 H 0.064 0.936 27 O -0.550 6.550 28 C 0.083 3.917 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.381 0.619 45 H 0.099 0.901 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -6.759 -27.182 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.306 3.694 6 O -0.419 6.419 7 N -0.347 5.347 8 C -0.016 4.016 9 C -0.186 4.186 10 C 0.051 3.949 11 H 0.115 0.885 12 N -0.377 5.377 13 C 0.321 3.679 14 O -0.396 6.396 15 C -0.274 4.274 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.026 3.974 26 H 0.082 0.918 27 O -0.355 6.355 28 C -0.040 4.040 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.228 0.772 45 H 0.117 0.883 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.232 -8.119 -27.220 30.191 hybrid contribution -0.884 1.258 0.255 1.559 sum -11.115 -6.861 -26.965 29.962 Atomic orbital electron populations 1.23908 0.95996 1.02001 1.00810 1.22956 0.96108 0.98283 1.00199 1.20516 0.97758 0.95567 0.97854 1.21679 0.99062 0.95422 1.01439 1.20800 0.78935 0.89169 0.80517 1.90701 1.65664 1.48387 1.37156 1.48127 1.39935 1.18050 1.28572 1.21862 1.02870 0.90940 0.85978 1.22372 1.00783 0.97901 0.97499 1.20814 1.01389 0.90965 0.81759 0.88542 1.45840 1.43933 1.38809 1.09143 1.20265 0.79332 0.82870 0.85456 1.90688 1.36336 1.28981 1.83560 1.23274 1.05436 1.03974 0.94762 1.84754 1.52500 1.48810 1.05437 1.22321 1.28586 1.21929 0.94073 0.89401 1.24715 0.96234 0.96061 0.94325 1.69940 1.41466 1.39646 1.00631 0.86729 0.82452 0.83521 0.79096 1.19211 1.19964 1.15945 1.22373 0.94542 0.86356 0.94088 0.91774 1.86656 1.60551 1.28231 1.60026 1.22309 0.97531 0.86260 0.97932 0.88506 0.88405 0.87235 0.90724 0.90212 0.88499 0.88480 0.90259 0.88776 0.88600 0.90865 0.76554 0.88459 0.88520 0.91950 0.77167 0.88311 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 14.32 29.01 0.42 -0.61 16 2 C -0.16 -0.86 9.52 -36.02 -0.34 -1.20 16 3 C -0.08 -0.51 4.95 -27.88 -0.14 -0.65 16 4 C -0.14 -0.76 4.03 -27.88 -0.11 -0.87 16 5 C 0.52 4.42 7.70 -10.98 -0.08 4.34 16 6 O -0.54 -6.51 15.40 5.55 0.09 -6.43 16 7 N -0.61 -4.63 2.97 -172.78 -0.51 -5.14 16 8 C 0.11 0.67 6.34 -3.71 -0.02 0.65 16 9 C -0.15 -1.22 5.65 -26.61 -0.15 -1.37 16 10 C 0.16 1.64 2.12 -67.89 -0.14 1.50 16 11 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 12 N -0.72 -9.02 4.92 -53.77 -0.26 -9.28 16 13 C 0.53 9.22 7.81 -10.99 -0.09 9.13 16 14 O -0.52 -10.75 15.52 5.55 0.09 -10.66 16 15 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 16 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 17 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 18 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 21 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 25 C 0.09 0.72 3.14 -26.63 -0.08 0.64 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 O -0.55 -4.92 13.16 -35.23 -0.46 -5.39 16 28 C 0.08 0.65 6.06 -3.73 -0.02 0.63 16 29 H 0.10 0.51 7.84 -52.48 -0.41 0.10 16 30 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.07 0.55 7.75 -51.93 -0.40 0.15 16 33 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.10 0.38 7.94 -51.93 -0.41 -0.03 16 35 H 0.10 0.43 7.69 -51.93 -0.40 0.03 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.39 5.93 -51.93 -0.31 0.08 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16 41 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.38 1.78 9.08 45.56 0.41 2.19 16 45 H 0.10 0.81 7.01 -51.93 -0.36 0.44 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -36.56 393.48 -7.84 -44.40 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.43 Total: 2.84 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.34 Total: -1.96 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.00 Total: -40.15 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.29 Total: -22.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.56 -7.84 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345758810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.775 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds