Wall clock time and date at job start Wed Apr 1 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99828 * 2 1 4 4 C 1.52997 * 109.47228 * 124.99863 * 3 2 1 5 5 C 1.50701 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99745 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00201 * 179.97438 * 5 4 3 8 8 C 1.46921 * 120.62786 * 0.02562 * 7 5 4 9 9 C 1.53193 * 108.77831 * 126.41061 * 8 7 5 10 10 C 1.53039 * 109.30823 * 54.63242 * 9 8 7 11 11 H 1.09007 * 109.46519 * 58.65988 * 10 9 8 12 12 N 1.46504 * 109.45958 * 178.61658 * 10 9 8 13 13 C 1.34777 * 119.99839 * 275.06796 * 12 10 9 14 14 O 1.21276 * 120.00099 * 0.02562 * 13 12 10 15 15 C 1.50707 * 119.99823 * 179.97438 * 13 12 10 16 16 S 1.80996 * 109.46993 * 180.02562 * 15 13 12 17 17 C 1.76192 * 99.99995 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00348 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99667 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47331 * 119.99804 * 21 19 17 24 24 H 1.48508 * 109.47125 * 239.99885 * 21 19 17 25 25 C 1.53039 * 109.53975 * 298.63422 * 10 9 8 26 26 H 1.09001 * 109.49682 * 301.38452 * 25 10 9 27 27 O 1.42905 * 109.49760 * 181.31728 * 25 10 9 28 28 C 1.46919 * 120.63038 * 180.02562 * 7 5 4 29 29 H 1.07994 * 120.00237 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99796 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00237 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46911 * 4.99725 * 3 2 1 33 33 H 1.09000 * 109.46810 * 244.99961 * 3 2 1 34 34 H 1.09007 * 109.46889 * 59.99941 * 4 3 2 35 35 H 1.09000 * 109.47305 * 299.99796 * 4 3 2 36 36 H 1.08999 * 109.59135 * 6.62004 * 8 7 5 37 37 H 1.09005 * 109.58417 * 246.19901 * 8 7 5 38 38 H 1.09001 * 109.49617 * 294.68686 * 9 8 7 39 39 H 1.08997 * 109.49787 * 174.58340 * 9 8 7 40 40 H 0.97001 * 119.99867 * 95.06563 * 12 10 9 41 41 H 1.08998 * 109.46563 * 300.00148 * 15 13 12 42 42 H 1.08998 * 109.46893 * 60.00232 * 15 13 12 43 43 H 0.97000 * 120.00059 * 179.97438 * 20 19 17 44 44 H 0.96705 * 113.99788 * 180.02562 * 27 25 10 45 45 H 1.08994 * 109.58801 * 113.80380 * 28 7 5 46 46 H 1.08998 * 109.58916 * 353.37313 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4644 0.3209 7 7 4.7054 2.8872 2.1376 8 6 4.9807 1.8961 3.1867 9 6 6.4862 1.6140 3.2157 10 6 7.2450 2.9326 3.3818 11 1 6.9276 3.4208 4.3033 12 7 8.6838 2.6633 3.4430 13 6 9.2581 2.3327 4.6166 14 8 8.5838 2.2577 5.6219 15 6 10.7380 2.0552 4.6796 16 16 11.2025 1.6414 6.3793 17 6 12.9310 1.3735 6.1675 18 1 13.3790 1.4838 5.1910 19 6 13.7173 1.0217 7.2559 20 7 13.1717 0.8887 8.4463 21 14 15.5500 0.7384 7.0315 22 1 15.9128 0.9499 5.6071 23 1 16.3062 1.6921 7.8822 24 1 15.8879 -0.6527 7.4266 25 6 6.9479 3.8476 2.1915 26 1 7.2429 3.3501 1.2677 27 8 7.6808 5.0663 2.3321 28 6 5.4479 4.1548 2.1508 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2357 2.1130 36 1 4.4404 0.9747 2.9699 37 1 4.6639 2.2892 4.1528 38 1 6.7850 1.1374 2.2821 39 1 6.7166 0.9538 4.0518 40 1 9.2230 2.7230 2.6389 41 1 10.9789 1.2187 4.0235 42 1 11.2876 2.9397 4.3574 43 1 13.7211 0.6425 9.2069 44 1 7.5398 5.6954 1.6114 45 1 5.1694 4.7323 3.0322 46 1 5.2159 4.7236 1.2504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345758812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:37 Heat of formation + Delta-G solvation = -108.530810 kcal Electronic energy + Delta-G solvation = -27043.644375 eV Core-core repulsion = 23059.751071 eV Total energy + Delta-G solvation = -3983.893304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87788 -39.46504 -38.06154 -36.23847 -35.80292 -34.45708 -32.43320 -31.74508 -31.46589 -30.05170 -28.83339 -25.81270 -25.41937 -24.18469 -23.49254 -21.24063 -20.35434 -20.23733 -19.39865 -17.92683 -17.76863 -17.41702 -16.52258 -16.36167 -16.27615 -16.13952 -15.40541 -14.92070 -14.80914 -14.57503 -14.47109 -14.29722 -14.02306 -13.66838 -13.29599 -13.23239 -13.14053 -12.96180 -12.65193 -12.57963 -12.39682 -12.13338 -12.00345 -11.59794 -11.44559 -11.44305 -11.07446 -11.02238 -10.97144 -10.74949 -10.59338 -10.22030 -9.80744 -9.76237 -9.46738 -9.08272 -9.05645 -8.92799 -8.23579 -6.50023 -6.22297 -3.92452 1.82404 2.20664 2.48794 2.99685 3.08154 3.21198 3.27506 3.32011 3.65804 3.73293 4.00275 4.20102 4.38681 4.41731 4.47253 4.54546 4.63535 4.69676 4.78346 4.80336 4.86567 4.97055 5.08191 5.13109 5.17055 5.25292 5.30193 5.37545 5.38929 5.44631 5.53441 5.63217 5.69026 5.73236 5.88797 5.95178 6.01147 6.15189 6.20125 6.33269 6.58935 6.91264 7.25903 7.59722 7.69841 7.73582 8.35179 8.60221 9.23372 10.85215 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.001884 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.827780 B =14856.056717 C =15563.173737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.611 5.611 8 C 0.106 3.894 9 C -0.146 4.146 10 C 0.156 3.844 11 H 0.096 0.904 12 N -0.727 5.727 13 C 0.536 3.464 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.087 3.913 26 H 0.064 0.936 27 O -0.550 6.550 28 C 0.083 3.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.380 0.620 45 H 0.080 0.920 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 1.377 -18.190 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.306 3.694 6 O -0.420 6.420 7 N -0.346 5.346 8 C -0.017 4.017 9 C -0.185 4.185 10 C 0.050 3.950 11 H 0.114 0.886 12 N -0.380 5.380 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.027 3.973 26 H 0.082 0.918 27 O -0.354 6.354 28 C -0.040 4.040 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.227 0.773 45 H 0.098 0.902 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.625 1.376 -16.215 27.869 hybrid contribution 2.114 0.122 -2.098 2.981 sum -20.510 1.499 -18.313 27.537 Atomic orbital electron populations 1.23902 0.95991 1.01964 1.00942 1.22966 0.96111 0.98315 1.00076 1.20513 0.97760 0.95541 0.97879 1.21680 0.99040 0.95441 1.01447 1.20793 0.79261 0.89092 0.80272 1.90697 1.65734 1.48401 1.37159 1.48124 1.39720 1.18205 1.28585 1.21868 0.96259 0.92331 0.91215 1.22372 0.93860 0.98148 1.04147 1.20802 0.81922 0.93614 0.98621 0.88566 1.45883 1.08067 1.72726 1.11281 1.20295 0.89649 0.75352 0.82499 1.90688 1.64478 1.49978 1.34171 1.23529 0.93914 1.04650 1.08282 1.85363 1.08262 1.89706 0.99997 1.22915 0.93165 1.54489 0.97764 0.90887 1.24989 0.99425 0.94730 0.94443 1.70025 1.36130 1.44728 0.99416 0.86118 0.82995 0.78016 0.78369 1.19630 1.20557 1.20578 1.22378 0.90393 0.86311 0.98257 0.91839 1.86664 1.69182 1.28340 1.51247 1.22307 0.90766 0.86474 1.04490 0.88532 0.88419 0.87211 0.90735 0.90217 0.88461 0.88505 0.88806 0.90222 0.90944 0.88549 0.76738 0.89300 0.89187 0.92246 0.77251 0.90194 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 14.32 29.01 0.42 -0.64 16 2 C -0.16 -0.89 9.52 -36.03 -0.34 -1.23 16 3 C -0.08 -0.53 4.95 -27.88 -0.14 -0.66 16 4 C -0.14 -0.80 4.03 -27.88 -0.11 -0.91 16 5 C 0.52 4.59 7.70 -10.98 -0.08 4.50 16 6 O -0.54 -6.67 15.40 5.55 0.09 -6.58 16 7 N -0.61 -4.86 2.97 -172.80 -0.51 -5.38 16 8 C 0.11 0.72 6.34 -3.71 -0.02 0.70 16 9 C -0.15 -1.30 5.65 -26.61 -0.15 -1.45 16 10 C 0.16 1.74 2.12 -67.89 -0.14 1.59 16 11 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 12 N -0.73 -9.57 4.92 -53.76 -0.26 -9.83 16 13 C 0.54 9.77 7.81 -10.98 -0.09 9.69 16 14 O -0.52 -11.34 15.52 5.56 0.09 -11.26 16 15 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.09 0.76 3.14 -26.63 -0.08 0.68 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 O -0.55 -5.16 13.16 -35.23 -0.46 -5.62 16 28 C 0.08 0.69 6.06 -3.73 -0.02 0.66 16 29 H 0.10 0.52 7.84 -52.49 -0.41 0.10 16 30 H 0.10 0.44 8.06 -52.48 -0.42 0.02 16 31 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.07 0.57 7.75 -51.93 -0.40 0.16 16 33 H 0.08 0.60 8.10 -51.93 -0.42 0.17 16 34 H 0.10 0.43 7.69 -51.92 -0.40 0.03 16 35 H 0.10 0.45 7.94 -51.93 -0.41 0.04 16 36 H 0.09 0.43 5.93 -51.93 -0.31 0.12 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.40 4.36 8.60 -40.82 -0.35 4.01 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.38 1.91 9.08 45.56 0.41 2.32 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.84 7.01 -51.93 -0.36 0.47 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -36.89 396.17 -8.35 -45.24 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.40 Total: 3.14 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.35 Total: -2.85 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.04 Total: -40.55 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.29 Total: -23.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.89 -8.35 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345758812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.288 kcal (2) G-P(sol) polarization free energy of solvation -36.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds