Wall clock time and date at job start Wed Apr 1 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 110.46065 * 2 1 4 4 O 1.21281 * 119.99811 * 241.15168 * 3 2 1 5 5 N 1.34781 * 119.99963 * 61.14871 * 3 2 1 6 6 C 1.46497 * 119.99953 * 180.02562 * 5 3 2 7 7 H 1.08997 * 110.77693 * 31.76417 * 6 5 3 8 8 C 1.55154 * 110.72021 * 155.00094 * 6 5 3 9 9 C 1.54908 * 101.58289 * 153.86481 * 8 6 5 10 10 N 1.47425 * 104.92961 * 322.93718 * 9 8 6 11 11 C 1.34774 * 125.65138 * 204.15299 * 10 9 8 12 12 O 1.21280 * 120.00501 * 180.02562 * 11 10 9 13 13 C 1.50698 * 119.99753 * 0.02907 * 11 10 9 14 14 S 1.81001 * 109.47236 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00467 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99270 * 359.97438 * 15 14 13 17 17 C 1.38791 * 120.00497 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99650 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00385 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47199 * 59.99715 * 19 17 15 21 21 H 1.48495 * 109.47418 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47101 * 299.99924 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 10 9 8 24 24 C 1.54512 * 110.62688 * 237.31135 * 2 1 3 25 25 C 1.54479 * 104.06472 * 241.30047 * 24 2 1 26 26 O 1.44423 * 104.80320 * 336.02536 * 25 24 2 27 27 C 1.44424 * 105.27737 * 40.50673 * 26 25 24 28 28 H 1.09000 * 109.46923 * 60.69973 * 1 2 3 29 29 H 1.08998 * 109.47724 * 180.70145 * 1 2 3 30 30 H 1.09005 * 109.47186 * 300.70191 * 1 2 3 31 31 H 0.96996 * 119.99924 * 0.02562 * 5 3 2 32 32 H 1.09008 * 111.00345 * 35.78951 * 8 6 5 33 33 H 1.08999 * 111.00564 * 271.94283 * 8 6 5 34 34 H 1.09002 * 110.36632 * 81.83114 * 9 8 6 35 35 H 1.08995 * 110.36781 * 204.04351 * 9 8 6 36 36 H 1.09001 * 109.47204 * 299.99785 * 13 11 10 37 37 H 1.09000 * 109.47543 * 59.99762 * 13 11 10 38 38 H 0.97007 * 120.00036 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.85762 * 239.50064 * 23 10 9 40 40 H 1.08999 * 109.87327 * 118.35916 * 23 10 9 41 41 H 1.09001 * 110.51080 * 359.95215 * 24 2 1 42 42 H 1.09006 * 110.50629 * 122.65602 * 24 2 1 43 43 H 1.08994 * 110.37136 * 217.18910 * 25 24 2 44 44 H 1.09004 * 110.36844 * 94.85512 * 25 24 2 45 45 H 1.08999 * 110.37205 * 200.65725 * 27 26 25 46 46 H 1.09003 * 110.46035 * 78.36696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7435 1.8029 -0.9200 5 7 1.7646 2.2402 1.0224 6 6 2.2762 3.6129 1.0221 7 1 2.3625 3.9932 0.0042 8 6 1.3702 4.5366 1.8783 9 6 2.3678 5.6422 2.3049 10 7 3.6416 4.9363 2.5347 11 6 4.6434 5.3620 3.3294 12 8 5.6511 4.6970 3.4438 13 6 4.5113 6.6644 4.0759 14 16 6.0091 6.9565 5.0492 15 6 5.5938 8.4980 5.7950 16 1 4.6418 8.9615 5.5822 17 6 6.4903 9.1169 6.6549 18 7 7.6512 8.5525 6.9129 19 14 6.0497 10.7506 7.4461 20 1 4.8210 10.5889 8.2644 21 1 7.1676 11.1971 8.3155 22 1 5.8097 11.7644 6.3877 23 6 3.6346 3.6895 1.7505 24 6 2.0743 -0.7810 -1.2170 25 6 2.8800 -1.9400 -0.5895 26 8 3.2416 -1.4679 0.7266 27 6 2.0712 -0.7797 1.2188 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 1.2156 1.9274 1.7583 32 1 0.9805 4.0056 2.7469 33 1 0.5591 4.9519 1.2801 34 1 2.4805 6.3790 1.5096 35 1 2.0304 6.1241 3.2225 36 1 4.3754 7.4789 3.3643 37 1 3.6496 6.6160 4.7415 38 1 8.2777 8.9849 7.5143 39 1 3.7474 2.8332 2.4155 40 1 4.4454 3.7053 1.0223 41 1 1.2534 -1.1690 -1.8201 42 1 2.7244 -0.1457 -1.8187 43 1 3.7741 -2.1432 -1.1788 44 1 2.2621 -2.8350 -0.5152 45 1 2.3441 -0.0914 2.0188 46 1 1.3286 -1.4953 1.5717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352933780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:07 Heat of formation + Delta-G solvation = -143.103934 kcal Electronic energy + Delta-G solvation = -27456.645610 eV Core-core repulsion = 23471.253102 eV Total energy + Delta-G solvation = -3985.392507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91005 -41.00734 -39.58209 -38.41080 -35.56705 -34.68270 -34.58991 -32.25211 -30.92323 -30.65151 -29.00955 -27.66042 -27.34776 -25.11284 -24.22923 -23.28350 -22.09708 -20.87065 -20.56215 -19.61695 -18.44161 -18.15319 -17.84038 -17.15839 -16.90458 -16.88357 -16.69191 -16.46597 -15.98959 -15.76905 -15.64485 -15.28430 -14.95773 -14.57793 -14.47748 -14.06955 -14.02744 -13.82990 -13.69975 -13.37627 -13.26848 -13.17078 -12.92408 -12.85943 -12.76289 -12.64494 -12.63386 -12.46529 -12.02579 -11.90044 -11.75076 -11.65958 -11.13472 -11.12995 -11.04933 -10.63654 -10.30806 -10.29281 -9.80347 -8.69989 -8.34696 -6.14364 1.19085 1.41032 1.44553 1.47709 1.50460 1.54870 1.84608 2.19671 2.27023 2.96697 2.99368 3.20002 3.27834 3.37755 3.46738 3.59780 3.83281 3.88595 3.97053 3.99741 4.12491 4.18567 4.22131 4.28427 4.29400 4.42097 4.51695 4.58776 4.62255 4.68804 4.71860 4.75255 4.80619 4.89551 4.93109 4.95669 5.02824 5.14957 5.23634 5.24800 5.38622 5.40998 5.77044 6.19200 6.30318 6.41232 7.04451 7.06004 7.11746 8.74421 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.001973 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.039620 B =14185.298635 C =14755.196657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 C 0.525 3.475 4 O -0.576 6.576 5 N -0.704 5.704 6 C 0.144 3.856 7 H 0.101 0.899 8 C -0.117 4.117 9 C 0.087 3.913 10 N -0.615 5.615 11 C 0.544 3.456 12 O -0.571 6.571 13 C -0.116 4.116 14 S -0.158 6.158 15 C -0.544 4.544 16 H 0.086 0.914 17 C 0.011 3.989 18 N -0.913 5.913 19 Si 1.001 2.999 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.261 1.261 23 C 0.097 3.903 24 C -0.145 4.145 25 C 0.041 3.959 26 O -0.407 6.407 27 C 0.052 3.948 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.271 0.729 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.308 -17.462 -15.176 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 C 0.313 3.687 4 O -0.454 6.454 5 N -0.356 5.356 6 C 0.038 3.962 7 H 0.119 0.881 8 C -0.155 4.155 9 C -0.034 4.034 10 N -0.351 5.351 11 C 0.332 3.668 12 O -0.449 6.449 13 C -0.267 4.267 14 S 0.069 5.931 15 C -0.692 4.692 16 H 0.104 0.896 17 C -0.194 4.194 18 N -0.549 5.549 19 Si 0.823 3.177 20 H -0.184 1.184 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.028 4.028 24 C -0.183 4.183 25 C -0.035 4.035 26 O -0.326 6.326 27 C -0.025 4.025 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.257 0.743 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.930 -18.165 -15.421 33.770 hybrid contribution -0.530 1.490 0.519 1.665 sum -24.459 -16.675 -14.902 33.142 Atomic orbital electron populations 1.21850 0.88021 1.04980 1.03904 1.22235 1.00158 0.90921 0.98223 1.20864 0.78662 0.87967 0.81232 1.90694 1.39652 1.77462 1.37622 1.45761 1.53637 1.11838 1.24396 1.21820 0.91112 0.82803 1.00457 0.88111 1.23102 0.96975 0.94787 1.00638 1.22741 0.81210 0.96082 1.03399 1.48420 1.18085 1.23333 1.45246 1.19940 0.81805 0.86521 0.78530 1.90700 1.31090 1.58321 1.64838 1.23280 1.04124 0.97141 1.02130 1.85700 1.21572 1.29235 1.56543 1.23154 1.06635 1.06838 1.32549 0.89590 1.26184 0.94138 1.02741 0.96293 1.70194 1.08656 1.40722 1.35337 0.84965 0.78191 0.76463 0.78130 1.18378 1.20554 1.18582 1.22373 0.99382 0.86917 0.94092 1.23083 1.01343 0.96792 0.97053 1.23624 1.00210 0.96838 0.82864 1.89164 1.36681 1.74199 1.32570 1.23749 0.88378 0.95638 0.94686 0.91588 0.88926 0.89775 0.74256 0.87929 0.85458 0.89445 0.88325 0.87297 0.86805 0.92006 0.92269 0.93972 0.87161 0.91298 0.89337 0.89374 0.89268 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.48 8.22 71.98 0.59 0.11 16 2 C -0.11 -1.30 0.88 -51.91 -0.05 -1.34 16 3 C 0.53 9.63 6.49 87.66 0.57 10.20 16 4 O -0.58 -16.24 14.94 -3.03 -0.05 -16.29 16 5 N -0.70 -9.16 4.73 -436.92 -2.06 -11.22 16 6 C 0.14 2.36 3.32 46.18 0.15 2.51 16 7 H 0.10 1.90 7.55 -2.39 -0.02 1.88 16 8 C -0.12 -1.07 6.71 31.98 0.21 -0.85 16 9 C 0.09 1.43 6.68 86.85 0.58 2.02 16 10 N -0.62 -17.48 3.34 -811.12 -2.71 -20.19 16 11 C 0.54 21.80 7.87 87.66 0.69 22.49 16 12 O -0.57 -29.01 16.20 -3.03 -0.05 -29.06 16 13 C -0.12 -4.70 5.16 71.24 0.37 -4.34 16 14 S -0.16 -8.96 20.57 -56.49 -1.16 -10.12 16 15 C -0.54 -31.11 9.50 67.95 0.65 -30.46 16 16 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 17 C 0.01 0.63 5.49 84.86 0.47 1.10 16 18 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 19 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 C 0.10 2.58 6.64 86.68 0.58 3.15 16 24 C -0.14 -1.93 6.32 31.61 0.20 -1.73 16 25 C 0.04 0.56 7.63 72.48 0.55 1.11 16 26 O -0.41 -8.26 11.65 -148.98 -1.74 -10.00 16 27 C 0.05 0.64 6.69 72.48 0.49 1.13 16 28 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.09 0.04 8.12 -2.39 -0.02 0.02 16 30 H 0.08 0.02 7.71 -2.38 -0.02 0.00 16 31 H 0.42 2.58 7.91 -92.71 -0.73 1.85 16 32 H 0.10 0.63 8.01 -2.38 -0.02 0.62 16 33 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.43 7.47 -2.39 -0.02 1.41 16 36 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 37 H 0.11 4.04 7.85 -2.40 -0.02 4.02 16 38 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 39 H 0.06 1.70 8.03 -2.38 -0.02 1.68 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 0.83 7.74 -2.39 -0.02 0.81 16 42 H 0.07 1.39 6.51 -2.38 -0.02 1.37 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.09 1.12 7.44 -2.39 -0.02 1.11 16 46 H 0.10 0.63 7.85 -2.39 -0.02 0.61 16 Total: -1.00 -90.70 388.43 0.85 -89.85 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.26 Total: 12.87 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.05 Total: 5.08 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -4.48 Total: -87.81 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.83 Total: -55.35 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -90.70 0.85 -89.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352933780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.258 kcal (2) G-P(sol) polarization free energy of solvation -90.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds