Wall clock time and date at job start Wed Apr 1 2020 01:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38095 * 119.58082 * 2 1 4 4 C 1.38782 * 119.28254 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.75246 * 179.97438 * 4 3 2 6 6 C 1.38412 * 118.49124 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.44943 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47236 * 89.99135 * 7 6 4 9 9 O 1.21288 * 120.00076 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99979 * 180.02562 * 8 7 6 11 11 C 1.39987 * 120.00193 * 175.49973 * 10 8 7 12 12 C 1.38922 * 119.99989 * 214.85165 * 11 10 8 13 13 C 1.38007 * 119.99650 * 179.78754 * 12 11 10 14 14 C 1.38905 * 120.00201 * 0.45757 * 13 12 11 15 15 O 1.35777 * 120.00035 * 179.76758 * 14 13 12 16 16 C 1.34816 * 117.00215 * 185.36317 * 15 14 13 17 17 H 1.07999 * 119.99965 * 354.97210 * 16 15 14 18 18 C 1.38632 * 120.00121 * 174.96063 * 16 15 14 19 19 N 1.31576 * 119.99742 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00166 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46875 * 60.00763 * 20 18 16 22 22 H 1.48502 * 109.47114 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47235 * 300.00576 * 20 18 16 24 24 C 1.38912 * 120.00540 * 359.79108 * 14 13 12 25 25 C 1.37997 * 119.99644 * 359.97438 * 24 14 13 26 26 C 1.38883 * 119.11029 * 359.97328 * 6 4 3 27 27 O 1.35679 * 119.68004 * 180.02562 * 26 6 4 28 28 N 1.31935 * 119.58258 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46696 * 270.02192 * 1 2 3 30 30 H 1.08992 * 109.46879 * 30.01810 * 1 2 3 31 31 H 1.08996 * 109.46754 * 150.02081 * 1 2 3 32 32 H 1.08002 * 120.35741 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47089 * 90.00489 * 5 4 3 34 34 H 1.09001 * 109.47288 * 210.00330 * 5 4 3 35 35 H 1.09002 * 109.47576 * 330.00154 * 5 4 3 36 36 H 1.08996 * 109.47173 * 210.00078 * 7 6 4 37 37 H 1.09004 * 109.46673 * 329.99488 * 7 6 4 38 38 H 0.96998 * 120.00089 * 355.49484 * 10 8 7 39 39 H 1.08001 * 120.00252 * 0.02562 * 12 11 10 40 40 H 1.08004 * 119.99715 * 180.22511 * 13 12 11 41 41 H 0.97000 * 119.99954 * 179.97438 * 19 18 16 42 42 H 1.07994 * 119.99891 * 179.97438 * 24 14 13 43 43 H 1.08003 * 120.00217 * 179.97438 * 25 24 14 44 44 H 0.96701 * 114.00249 * 269.99970 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2010 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4848 0.0000 6 6 4.2305 -0.0262 0.0005 7 6 5.7364 -0.0855 0.0005 8 6 6.2383 -0.1051 1.4213 9 8 5.4508 -0.0744 2.3432 10 7 7.5624 -0.1567 1.6675 11 6 8.0331 -0.0799 2.9836 12 6 9.2316 0.5678 3.2560 13 6 9.6934 0.6473 4.5540 14 6 8.9648 0.0715 5.5870 15 8 9.4215 0.1457 6.8635 16 6 8.7265 -0.5274 7.8024 17 1 7.8049 -1.0250 7.5388 18 6 9.1949 -0.5810 9.1060 19 7 10.3176 0.0255 9.4271 20 14 8.2316 -1.5130 10.4071 21 1 8.1141 -2.9390 10.0093 22 1 8.9392 -1.4186 11.7093 23 1 6.8756 -0.9220 10.5371 24 6 7.7690 -0.5806 5.3141 25 6 7.3047 -0.6560 4.0168 26 6 3.4803 -1.1949 0.0005 27 8 4.1094 -2.3971 0.0010 28 7 2.1584 -1.1474 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6478 2.1357 -0.0004 33 1 4.5410 2.7967 1.0275 34 1 5.3040 2.3367 -0.5134 35 1 3.7791 3.2549 -0.5146 36 1 6.0644 -0.9891 -0.5133 37 1 6.1344 0.7895 -0.5134 38 1 8.1892 -0.2472 0.9328 39 1 9.7999 1.0124 2.4524 40 1 10.6233 1.1540 4.7662 41 1 10.6452 -0.0117 10.3394 42 1 7.2027 -1.0286 6.1172 43 1 6.3752 -1.1633 3.8045 44 1 4.2921 -2.7458 -0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361723499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:29 Heat of formation + Delta-G solvation = -40.727547 kcal Electronic energy + Delta-G solvation = -28527.108697 eV Core-core repulsion = 24410.711611 eV Total energy + Delta-G solvation = -4116.397086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13194 -39.91397 -38.60704 -37.50941 -36.54325 -34.98336 -33.93682 -32.23783 -32.10575 -30.65848 -30.16583 -28.17937 -27.83411 -26.05276 -25.15299 -23.09185 -22.36659 -21.71772 -20.95734 -19.98890 -18.58980 -18.11723 -17.59352 -17.49641 -16.85668 -16.43375 -15.77370 -15.45041 -15.10988 -14.52419 -14.49419 -14.22094 -14.01765 -13.69052 -13.60797 -13.56271 -13.38180 -13.22819 -13.18967 -12.85649 -12.63290 -12.54288 -12.17202 -12.15791 -11.81148 -11.77488 -11.66465 -11.51750 -11.47614 -10.98415 -10.74234 -10.43216 -9.81855 -9.66387 -9.62544 -9.57149 -9.15916 -8.84468 -8.67515 -8.18719 -6.92207 -6.42518 -4.00082 0.75804 0.98112 2.09784 2.23625 2.86322 3.15669 3.17026 3.19022 3.20284 3.33556 3.57941 4.00197 4.15775 4.33903 4.54654 4.54874 4.60295 4.83554 4.89116 5.03239 5.08888 5.11430 5.12341 5.27111 5.29081 5.31095 5.35182 5.47336 5.59822 5.68670 5.77187 5.79211 5.82012 6.03384 6.15964 6.20087 6.32258 6.37052 6.74647 6.87453 7.02798 7.11771 7.27390 7.33286 7.46289 7.70879 7.75070 7.80538 8.02775 8.39914 9.03330 9.72486 10.75334 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.002349 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.840141 B =11917.285543 C =12822.734390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.152 3.848 3 C -0.184 4.184 4 C -0.010 4.010 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.092 4.092 8 C 0.510 3.490 9 O -0.516 6.516 10 N -0.662 5.662 11 C 0.034 3.966 12 C -0.093 4.093 13 C -0.179 4.179 14 C 0.146 3.854 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.220 4.220 25 C -0.063 4.063 26 C 0.333 3.667 27 O -0.475 6.475 28 N -0.508 5.508 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.401 0.599 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 2.217 -25.183 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.178 4.178 6 C -0.142 4.142 7 C -0.133 4.133 8 C 0.296 3.704 9 O -0.390 6.390 10 N -0.307 5.307 11 C -0.058 4.058 12 C -0.113 4.113 13 C -0.199 4.199 14 C 0.092 3.908 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.240 4.240 25 C -0.083 4.083 26 C 0.154 3.846 27 O -0.281 6.281 28 N -0.228 5.228 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.235 0.765 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.975 1.649 -23.604 26.985 hybrid contribution 0.369 0.027 -0.127 0.391 sum -12.606 1.676 -23.731 26.923 Atomic orbital electron populations 1.20742 0.88530 1.03436 1.03422 1.20972 0.96723 0.87199 0.93667 1.21780 0.93883 0.99379 1.05319 1.20048 0.93755 0.94859 0.93060 1.20917 0.99766 0.93379 1.03702 1.20082 0.95341 0.92895 1.05890 1.20463 0.92014 1.05219 0.95594 1.20373 0.82268 0.76886 0.90877 1.90737 1.55024 1.47546 1.45720 1.43175 1.06950 1.73031 1.07495 1.17245 0.97833 1.07316 0.83447 1.20346 0.95807 0.99259 0.95932 1.19984 1.01834 1.07622 0.90453 1.19414 0.91899 0.93259 0.86198 1.83970 1.50051 1.62460 1.11504 1.21291 1.06102 1.31489 0.87804 0.89095 1.25275 0.96485 0.97399 0.97312 1.70037 1.19546 1.40397 1.19877 0.85788 0.79095 0.79590 0.79041 1.19462 1.20277 1.19468 1.21113 0.98584 1.07503 0.96835 1.20869 0.98964 0.96915 0.91570 1.18827 0.86635 0.84725 0.94413 1.84882 1.76509 1.33488 1.33268 1.66964 1.09475 1.30699 1.15634 0.90124 0.90503 0.90410 0.84457 0.89723 0.90821 0.90732 0.87812 0.87642 0.76499 0.86762 0.86077 0.91999 0.85267 0.85763 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.41 16 2 C 0.15 1.65 6.78 -82.60 -0.56 1.09 16 3 C -0.18 -1.79 9.44 -39.43 -0.37 -2.16 16 4 C -0.01 -0.10 5.91 -104.36 -0.62 -0.72 16 5 C -0.12 -0.96 9.67 36.01 0.35 -0.61 16 6 C -0.14 -1.57 4.40 -104.32 -0.46 -2.03 16 7 C -0.09 -0.85 5.25 -29.04 -0.15 -1.00 16 8 C 0.51 7.19 7.67 -10.99 -0.08 7.10 16 9 O -0.52 -9.85 13.47 5.55 0.07 -9.78 16 10 N -0.66 -8.84 5.34 -9.82 -0.05 -8.89 16 11 C 0.03 0.61 6.30 -83.63 -0.53 0.08 16 12 C -0.09 -1.62 9.96 -39.41 -0.39 -2.02 16 13 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 14 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 15 O -0.18 -5.11 9.75 0.00 0.00 -5.11 16 16 C -0.39 -11.18 9.48 30.88 0.29 -10.89 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 20 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 C -0.22 -5.14 9.16 -39.42 -0.36 -5.50 16 25 C -0.06 -1.33 8.69 -39.42 -0.34 -1.67 16 26 C 0.33 4.24 7.72 -17.12 -0.13 4.10 16 27 O -0.48 -5.40 12.62 -18.74 -0.24 -5.64 16 28 N -0.51 -6.74 10.30 -9.54 -0.10 -6.84 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.47 6.08 -51.93 -0.32 0.15 16 35 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 36 H 0.10 0.69 7.55 -51.93 -0.39 0.30 16 37 H 0.11 0.66 6.07 -51.93 -0.32 0.35 16 38 H 0.40 3.65 8.82 -40.82 -0.36 3.29 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 3.05 5.63 -52.49 -0.30 2.76 16 43 H 0.12 2.66 6.23 -52.48 -0.33 2.34 16 44 H 0.40 2.13 9.06 45.56 0.41 2.54 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -38.17 376.49 -7.02 -45.20 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.38 Total: 8.59 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -3.74 Total: -14.41 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.61 Total: -40.57 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.16 Total: -20.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.17 -7.02 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361723499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.469 kcal (2) G-P(sol) polarization free energy of solvation -38.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds