Wall clock time and date at job start Wed Apr 1 2020 01:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35920 * 117.00207 * 2 1 4 4 C 1.38850 * 120.40550 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00315 * 179.72507 * 4 3 2 6 6 C 1.31682 * 121.93632 * 0.27215 * 5 4 3 7 7 C 1.39519 * 120.69532 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.53356 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99946 * 173.83039 * 8 7 6 10 10 N 1.34778 * 119.99557 * 353.83248 * 8 7 6 11 11 C 1.46504 * 119.99553 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.46889 * 179.97438 * 11 10 8 13 13 C 1.38296 * 119.93100 * 269.72701 * 12 11 10 14 14 C 1.38100 * 120.06666 * 179.72683 * 13 12 11 15 15 C 1.38883 * 119.92961 * 0.56913 * 14 13 12 16 16 O 1.35754 * 120.06843 * 179.68554 * 15 14 13 17 17 C 1.34829 * 116.99738 * 185.68357 * 16 15 14 18 18 H 1.07991 * 120.00237 * 354.87794 * 17 16 15 19 19 C 1.38655 * 119.99477 * 174.87242 * 17 16 15 20 20 N 1.31561 * 119.99434 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00245 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47510 * 89.99754 * 21 19 17 23 23 H 1.48506 * 109.47106 * 209.99580 * 21 19 17 24 24 H 1.48502 * 109.47058 * 329.99294 * 21 19 17 25 25 C 1.38877 * 119.86294 * 359.69997 * 15 14 13 26 26 C 1.38102 * 119.92811 * 0.02562 * 25 15 14 27 27 C 1.38852 * 120.40958 * 180.29161 * 3 2 1 28 28 C 1.50699 * 120.87816 * 359.97438 * 27 3 2 29 29 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46934 * 300.00153 * 1 2 3 31 31 H 1.08998 * 109.46927 * 60.00222 * 1 2 3 32 32 H 1.08002 * 119.49859 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.64848 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00358 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47055 * 299.99502 * 11 10 8 36 36 H 1.08997 * 109.47318 * 59.99710 * 11 10 8 37 37 H 1.08003 * 119.96523 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.03517 * 180.26740 * 14 13 12 39 39 H 0.97002 * 119.99150 * 180.02562 * 20 19 17 40 40 H 1.07994 * 120.03283 * 179.97438 * 25 15 14 41 41 H 1.08006 * 119.96289 * 179.97438 * 26 25 15 42 42 H 1.09004 * 109.46814 * 263.54092 * 28 27 3 43 43 H 1.09005 * 109.47367 * 23.53011 * 28 27 3 44 44 H 1.08992 * 109.47490 * 143.53913 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 0.0049 6 6 3.1953 3.6891 0.0057 7 6 4.0199 2.5636 0.0003 8 6 5.4912 2.7103 0.0006 9 8 6.1998 1.7287 0.1090 10 7 6.0465 3.9325 -0.1192 11 6 7.5043 4.0778 -0.1194 12 6 7.8639 5.5340 -0.2658 13 6 8.0462 6.0765 -1.5248 14 6 8.3703 7.4119 -1.6625 15 6 8.5247 8.2073 -0.5345 16 8 8.8495 9.5188 -0.6663 17 6 9.0994 10.2045 0.4674 18 1 8.9566 9.7310 1.4274 19 6 9.5399 11.5175 0.4006 20 7 9.7833 12.1866 1.5068 21 14 9.7863 12.3367 -1.2600 22 1 8.5249 13.0000 -1.6769 23 1 10.8675 13.3495 -1.1567 24 1 10.1628 11.3118 -2.2665 25 6 8.3464 7.6582 0.7286 26 6 8.0169 6.3235 0.8594 27 6 3.4322 1.2936 -0.0061 28 6 4.2811 0.0484 -0.0122 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3226 -0.0014 33 1 3.6366 4.6748 0.0106 34 1 5.4810 4.7158 -0.2060 35 1 7.9076 3.6962 0.8186 36 1 7.9255 3.5144 -0.9520 37 1 7.9311 5.4562 -2.4014 38 1 8.5083 7.8361 -2.6461 39 1 10.0911 13.1053 1.4601 40 1 8.4662 8.2741 1.6075 41 1 7.8785 5.8957 1.8414 42 1 4.5858 -0.1885 1.0071 43 1 3.7054 -0.7818 -0.4215 44 1 5.1658 0.2149 -0.6266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361900285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:19 Heat of formation + Delta-G solvation = -54.751144 kcal Electronic energy + Delta-G solvation = -27862.961089 eV Core-core repulsion = 23745.955895 eV Total energy + Delta-G solvation = -4117.005194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.11794 -41.02291 -40.46819 -38.99157 -38.56444 -35.93441 -34.69535 -34.44838 -32.48591 -31.84751 -31.02762 -28.95221 -28.49411 -27.73133 -26.28971 -24.70014 -23.71299 -23.36319 -22.05880 -21.79086 -19.86052 -19.48069 -19.09107 -18.52795 -17.65200 -17.37974 -17.04050 -16.77007 -16.74816 -16.32701 -16.03252 -15.75756 -15.59410 -15.25814 -15.15908 -14.80585 -14.69208 -14.37007 -14.24718 -14.06198 -13.98714 -13.85130 -13.77095 -13.33374 -13.16879 -13.05707 -12.73409 -12.57316 -12.46437 -12.36902 -12.31471 -11.93418 -11.29882 -11.22441 -10.91342 -10.68329 -10.46168 -10.06461 -9.82639 -9.53731 -9.09522 -8.50399 -6.23375 -0.51919 0.08779 0.48276 0.55574 1.32937 1.36375 1.52261 1.74073 1.93458 2.27769 2.34531 2.67585 2.79375 3.02499 3.17781 3.28382 3.41446 3.61997 3.67308 3.82212 4.02262 4.03216 4.11964 4.14978 4.36049 4.40241 4.44816 4.54535 4.55308 4.63587 4.73209 4.75715 4.77680 4.82475 4.96525 5.05518 5.13352 5.22999 5.32214 5.34255 5.44947 5.54570 5.71154 5.79410 5.88860 6.13068 6.19639 6.45540 6.72506 6.83758 7.09707 7.56812 8.60754 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.001901 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.001460 B =14723.027577 C =15338.481174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.044 3.956 5 N -0.473 5.473 6 C 0.101 3.899 7 C -0.163 4.163 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.707 5.707 11 C 0.183 3.817 12 C -0.175 4.175 13 C -0.044 4.044 14 C -0.192 4.192 15 C 0.129 3.871 16 O -0.242 6.242 17 C -0.399 4.399 18 H 0.083 0.917 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.261 1.261 25 C -0.239 4.239 26 C -0.049 4.049 27 C -0.031 4.031 28 C -0.105 4.105 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.285 0.715 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.052 -24.331 -5.498 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.019 3.981 4 C -0.114 4.114 5 N -0.183 5.183 6 C -0.058 4.058 7 C -0.168 4.168 8 C 0.351 3.649 9 O -0.436 6.436 10 N -0.359 5.359 11 C 0.061 3.939 12 C -0.176 4.176 13 C -0.062 4.062 14 C -0.211 4.211 15 C 0.080 3.920 16 O -0.149 6.149 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.185 1.185 25 C -0.258 4.258 26 C -0.068 4.068 27 C -0.040 4.040 28 C -0.161 4.161 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.195 0.805 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.173 0.827 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.882 -24.156 -5.511 30.556 hybrid contribution 0.378 0.766 0.146 0.866 sum -17.504 -23.390 -5.365 29.703 Atomic orbital electron populations 1.23507 0.75621 1.06344 1.02814 1.86091 1.23906 1.24822 1.88262 1.19782 0.91977 0.86881 0.99474 1.23565 1.02124 0.86384 0.99281 1.67613 1.12089 1.26819 1.11746 1.23126 0.88730 0.98632 0.95347 1.20668 0.94182 0.94278 1.07690 1.18048 0.87034 0.83322 0.76477 1.90736 1.63738 1.38239 1.50910 1.46067 1.08296 1.08351 1.73152 1.19991 0.79327 0.91513 1.03068 1.19527 1.09647 0.95425 0.93016 1.20966 0.94823 0.92792 0.97650 1.20522 1.09817 0.94287 0.96513 1.19759 0.93638 0.83552 0.95096 1.83521 1.78626 1.18923 1.33872 1.20707 1.46088 0.96194 0.84519 0.89934 1.25292 0.95312 0.95979 1.02296 1.69733 1.45439 1.12080 1.28910 0.85216 0.78736 0.78226 0.78563 1.19058 1.19467 1.18550 1.21273 1.10274 0.97432 0.96824 1.20939 0.95060 0.91568 0.99193 1.20030 0.91754 0.95963 0.96264 1.20796 0.98970 0.92862 1.03453 0.85811 0.91135 0.91031 0.79211 0.80492 0.75251 0.90750 0.89874 0.82743 0.85167 0.90577 0.87312 0.84718 0.90646 0.90544 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.54 9.57 -92.65 -0.89 -5.43 16 3 C 0.07 1.16 6.68 22.56 0.15 1.31 16 4 C 0.04 0.69 10.21 84.83 0.87 1.55 16 5 N -0.47 -9.28 10.34 -194.39 -2.01 -11.29 16 6 C 0.10 1.89 10.69 85.02 0.91 2.80 16 7 C -0.16 -3.38 5.89 -20.01 -0.12 -3.50 16 8 C 0.56 12.82 7.72 86.79 0.67 13.49 16 9 O -0.56 -15.46 13.52 -3.86 -0.05 -15.51 16 10 N -0.71 -13.94 5.50 -469.67 -2.58 -16.53 16 11 C 0.18 3.91 5.80 85.63 0.50 4.41 16 12 C -0.18 -4.52 5.25 -19.83 -0.10 -4.63 16 13 C -0.04 -1.17 9.69 22.25 0.22 -0.95 16 14 C -0.19 -6.65 9.99 22.39 0.22 -6.42 16 15 C 0.13 5.65 6.65 22.58 0.15 5.80 16 16 O -0.24 -12.63 8.59 -22.77 -0.20 -12.83 16 17 C -0.40 -22.82 9.95 67.92 0.68 -22.14 16 18 H 0.08 4.94 5.44 -2.92 -0.02 4.93 16 19 C 0.01 0.56 5.49 84.83 0.47 1.03 16 20 N -0.92 -54.11 13.96 21.61 0.30 -53.81 16 21 Si 0.97 44.40 28.62 68.60 1.96 46.36 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 C -0.24 -9.73 9.17 22.39 0.21 -9.53 16 26 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 27 C -0.03 -0.64 5.97 -19.30 -0.12 -0.76 16 28 C -0.10 -2.09 8.68 71.24 0.62 -1.47 16 29 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.07 0.22 7.68 -2.39 -0.02 0.21 16 31 H 0.07 0.21 7.67 -2.39 -0.02 0.19 16 32 H 0.19 1.68 6.30 -2.91 -0.02 1.66 16 33 H 0.18 2.58 6.46 -2.91 -0.02 2.57 16 34 H 0.41 6.88 6.56 -92.71 -0.61 6.27 16 35 H 0.07 1.64 8.09 -2.38 -0.02 1.62 16 36 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16 37 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.11 4.97 5.64 -2.91 -0.02 4.96 16 41 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.08 1.32 7.44 -2.38 -0.02 1.31 16 44 H 0.08 1.92 5.99 -2.39 -0.01 1.90 16 Total: -1.00 -70.69 372.87 3.63 -67.06 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.46 Total: 21.12 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 6.64 Total: -19.14 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -4.29 Total: -81.63 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.13 Total: -33.77 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.36 kcal Total: -70.69 3.63 -67.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361900285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.305 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds