Wall clock time and date at job start Wed Apr 1 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34875 * 119.10107 * 2 1 4 4 C 1.41660 * 119.33738 * 180.02562 * 3 2 1 5 5 O 1.22084 * 121.06504 * 179.97438 * 4 3 2 6 6 C 1.47098 * 117.86657 * 0.27601 * 4 3 2 7 7 C 1.47291 * 120.88654 * 179.73054 * 6 4 3 8 8 O 1.21626 * 119.99708 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00481 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00049 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47154 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.92790 * 269.72957 * 11 10 9 13 13 C 1.38107 * 120.06758 * 179.72300 * 12 11 10 14 14 C 1.38874 * 119.92569 * 0.56882 * 13 12 11 15 15 O 1.35750 * 120.06264 * 179.68079 * 14 13 12 16 16 C 1.34838 * 117.00102 * 185.99438 * 15 14 13 17 17 H 1.08009 * 119.99450 * 354.93621 * 16 15 14 18 18 C 1.38651 * 120.00338 * 174.93017 * 16 15 14 19 19 N 1.31556 * 119.99893 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47126 * 90.00314 * 20 18 16 22 22 H 1.48503 * 109.47224 * 210.00077 * 20 18 16 23 23 H 1.48499 * 109.47263 * 330.00466 * 20 18 16 24 24 C 1.38875 * 119.86659 * 359.70333 * 14 13 12 25 25 C 1.38099 * 119.92729 * 0.02562 * 24 14 13 26 26 C 1.37989 * 118.23339 * 359.46298 * 6 4 3 27 27 N 1.34345 * 120.37105 * 0.52750 * 26 6 4 28 28 C 1.46505 * 118.80472 * 179.71721 * 27 26 6 29 29 H 1.09000 * 109.46762 * 96.02207 * 1 2 3 30 30 H 1.08999 * 109.47014 * 216.02371 * 1 2 3 31 31 H 1.08999 * 109.46799 * 336.02539 * 1 2 3 32 32 H 1.07994 * 120.32633 * 0.03870 * 3 2 1 33 33 H 0.96998 * 119.99765 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47577 * 300.00158 * 10 9 7 35 35 H 1.09004 * 109.47249 * 60.00420 * 10 9 7 36 36 H 1.08003 * 119.97239 * 359.97438 * 12 11 10 37 37 H 1.08002 * 120.03619 * 180.27140 * 13 12 11 38 38 H 0.96998 * 120.00022 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03239 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.95753 * 179.97438 * 25 24 14 41 41 H 1.08007 * 119.81585 * 180.27059 * 26 6 4 42 42 H 1.08992 * 109.47377 * 263.92537 * 28 27 26 43 43 H 1.09002 * 109.46631 * 23.92511 * 28 27 26 44 44 H 1.09003 * 109.46793 * 143.91920 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1785 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2052 2.2327 -0.0010 6 6 4.2725 -0.1132 -0.0074 7 6 5.7437 -0.1847 -0.0143 8 8 6.4022 0.8379 -0.0149 9 7 6.3601 -1.3832 -0.0199 10 6 7.8234 -1.4542 -0.0274 11 6 8.2562 -2.8977 -0.0333 12 6 8.4658 -3.5601 1.1625 13 6 8.8569 -4.8846 1.1605 14 6 9.0513 -5.5478 -0.0441 15 8 9.4421 -6.8478 -0.0493 16 6 9.7325 -7.3949 -1.2470 17 1 9.5714 -6.8288 -2.1526 18 6 10.2381 -8.6841 -1.3160 19 7 10.4340 -9.3738 -0.2130 20 14 10.6412 -9.4417 -2.9752 21 1 12.0505 -9.1362 -3.3296 22 1 10.4562 -10.9135 -2.9055 23 1 9.7373 -8.8776 -4.0097 24 6 8.8455 -4.8782 -1.2432 25 6 8.4490 -3.5554 -1.2344 26 6 3.5077 -1.2617 -0.0014 27 7 2.1664 -1.1846 -0.0004 28 6 1.3880 -2.4257 -0.0004 29 1 -0.3633 -0.1078 -1.0220 30 1 -0.3633 -0.8311 0.6044 31 1 -0.3633 0.9390 0.4176 32 1 1.6137 2.1083 0.0006 33 1 5.8350 -2.1987 -0.0199 34 1 8.2068 -0.9566 -0.9182 35 1 8.2156 -0.9605 0.8618 36 1 8.3195 -3.0423 2.0990 37 1 9.0162 -5.4027 2.0947 38 1 10.7873 -10.2758 -0.2613 39 1 8.9963 -5.3912 -2.1816 40 1 8.2892 -3.0341 -2.1667 41 1 3.9900 -2.2281 -0.0018 42 1 1.1021 -2.6753 -1.0221 43 1 1.9911 -3.2328 0.4156 44 1 0.4918 -2.2925 0.6056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364051532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:24 Heat of formation + Delta-G solvation = -31.574272 kcal Electronic energy + Delta-G solvation = -27997.248612 eV Core-core repulsion = 23881.248442 eV Total energy + Delta-G solvation = -4116.000170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51560 -39.50306 -38.94974 -37.89334 -36.79407 -34.39685 -33.75862 -32.90758 -32.35836 -30.32212 -30.05887 -28.44945 -27.28273 -25.89909 -24.88839 -24.26022 -22.08066 -21.98079 -20.70845 -20.63307 -18.45428 -18.08917 -17.87337 -17.06341 -16.51844 -16.45508 -16.06785 -15.46175 -15.16050 -14.72903 -14.62331 -14.52564 -14.26384 -13.95495 -13.91879 -13.73007 -13.64399 -13.54977 -13.38266 -13.22713 -12.84310 -12.80201 -12.67002 -12.36836 -12.23089 -12.04599 -11.69481 -11.42586 -10.98726 -10.80305 -10.71442 -10.51434 -9.99713 -9.82036 -9.45712 -9.28200 -8.93106 -8.88389 -8.31478 -8.19656 -7.35264 -6.55887 -4.14920 0.59372 1.02243 1.98035 2.05229 2.09985 2.98677 3.05207 3.07319 3.11570 3.39567 3.68875 3.76425 3.87625 4.04324 4.15722 4.34718 4.44168 4.48997 4.69684 4.76729 4.79732 4.86512 4.97700 5.04925 5.16007 5.20146 5.27638 5.40215 5.44406 5.47590 5.65771 5.81594 5.95394 6.08838 6.12828 6.22753 6.33262 6.44499 6.56640 6.61021 6.78037 6.93275 7.12011 7.25676 7.32373 7.66938 7.71320 7.88816 8.02688 8.46022 8.89562 9.57625 10.61639 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002099 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.542185 B =13335.783286 C =14347.375836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.270 4.270 4 C 0.407 3.593 5 O -0.481 6.481 6 C -0.297 4.297 7 C 0.568 3.432 8 O -0.517 6.517 9 N -0.727 5.727 10 C 0.181 3.819 11 C -0.213 4.213 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.237 4.237 25 C -0.051 4.051 26 C 0.174 3.826 27 N -0.471 5.471 28 C 0.047 3.953 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.392 0.608 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.545 10.296 -0.047 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.293 3.707 5 O -0.362 6.362 6 C -0.308 4.308 7 C 0.355 3.645 8 O -0.392 6.392 9 N -0.381 5.381 10 C 0.059 3.941 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.215 4.215 14 C 0.105 3.895 15 O -0.077 6.077 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.256 4.256 25 C -0.070 4.070 26 C 0.043 3.957 27 N -0.158 5.158 28 C -0.094 4.094 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.169 0.831 33 H 0.227 0.773 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.186 0.814 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.711 11.041 0.199 24.358 hybrid contribution -0.043 -1.121 -0.897 1.437 sum -21.755 9.921 -0.699 23.920 Atomic orbital electron populations 1.21191 0.88053 1.05063 1.04132 1.20278 0.94876 0.84998 0.94981 1.22286 0.96347 0.97175 1.13582 1.18152 0.88219 0.87916 0.76397 1.90823 1.69943 1.33228 1.42176 1.22591 0.94527 0.95068 1.18632 1.17529 0.86066 0.83736 0.77208 1.90847 1.65870 1.34014 1.48464 1.46239 1.08061 1.07432 1.76337 1.19957 0.78627 0.93529 1.02013 1.19242 1.13204 0.95295 0.93660 1.20556 0.96857 0.93285 0.96675 1.20218 1.10285 0.94712 0.96258 1.19438 0.91612 0.85135 0.93312 1.83979 1.72101 1.18456 1.33122 1.21352 1.44135 0.98439 0.83027 0.88938 1.25316 0.96165 0.95591 0.99402 1.70033 1.40992 1.11148 1.27208 0.85697 0.79235 0.78446 0.79986 1.19763 1.20199 1.19165 1.21161 1.10334 0.95626 0.98511 1.20660 0.96140 0.93739 0.96482 1.22289 0.82147 1.00072 0.91182 1.42572 1.05320 1.07271 1.60640 1.22582 0.97897 0.84343 1.04626 0.89309 0.90075 0.88878 0.83077 0.77339 0.91515 0.91457 0.86907 0.86397 0.91877 0.85444 0.87352 0.81441 0.89812 0.88550 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.24 9.34 36.01 0.34 0.09 16 2 C 0.15 0.93 6.64 -82.13 -0.55 0.39 16 3 C -0.27 -2.63 9.57 -39.47 -0.38 -3.01 16 4 C 0.41 6.05 6.96 -34.68 -0.24 5.81 16 5 O -0.48 -9.58 16.41 -15.17 -0.25 -9.82 16 6 C -0.30 -3.82 6.05 -102.72 -0.62 -4.44 16 7 C 0.57 8.96 7.77 -12.58 -0.10 8.86 16 8 O -0.52 -10.72 15.57 -14.76 -0.23 -10.95 16 9 N -0.73 -9.51 5.50 -62.61 -0.34 -9.86 16 10 C 0.18 2.65 5.80 -5.20 -0.03 2.62 16 11 C -0.21 -3.36 5.25 -104.58 -0.55 -3.91 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 13 C -0.20 -3.83 9.99 -39.39 -0.39 -4.22 16 14 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 15 O -0.17 -4.72 9.76 0.03 0.00 -4.72 16 16 C -0.39 -10.51 9.49 30.89 0.29 -10.21 16 17 H 0.09 2.28 5.21 -52.48 -0.27 2.00 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.33 13.67 55.48 0.76 -23.57 16 20 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.24 -4.78 9.17 -39.40 -0.36 -5.14 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 26 C 0.17 1.32 9.80 -16.54 -0.16 1.16 16 27 N -0.47 -2.50 2.97 -119.74 -0.36 -2.85 16 28 C 0.05 0.05 9.98 59.85 0.60 0.65 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.08 0.01 6.01 -51.93 -0.31 -0.30 16 31 H 0.09 0.14 7.97 -51.93 -0.41 -0.28 16 32 H 0.15 1.25 8.00 -52.49 -0.42 0.83 16 33 H 0.39 4.03 6.54 -40.82 -0.27 3.76 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 39 H 0.13 2.59 5.65 -52.49 -0.30 2.30 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.17 0.78 6.28 -52.48 -0.33 0.45 16 42 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 43 H 0.10 0.02 7.86 -51.93 -0.41 -0.39 16 44 H 0.09 -0.06 5.95 -51.93 -0.31 -0.37 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -38.94 376.48 -8.16 -47.11 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.12 Total: 3.90 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.28 Total: -9.59 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.06 Total: -36.28 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.48 Total: -25.50 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.94 -8.16 -47.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364051532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.533 kcal (2) G-P(sol) polarization free energy of solvation -38.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds