Wall clock time and date at job start Wed Apr 1 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33655 * 125.80255 * 2 1 4 4 C 1.34218 * 110.90569 * 179.97438 * 3 2 1 5 5 C 1.34177 * 109.12709 * 359.74322 * 4 3 2 6 6 C 1.36417 * 125.80177 * 179.97438 * 2 1 3 7 7 C 1.47379 * 127.18953 * 359.96658 * 6 2 1 8 8 O 1.21610 * 120.00359 * 359.97438 * 7 6 2 9 9 N 1.34774 * 119.99856 * 180.02562 * 7 6 2 10 10 C 1.46502 * 120.00181 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47396 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99799 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99518 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46794 * 179.97438 * 14 13 11 16 16 C 1.38639 * 119.75039 * 269.73051 * 15 14 13 17 17 C 1.37619 * 120.24667 * 179.72458 * 16 15 14 18 18 C 1.40717 * 119.74393 * 0.56298 * 17 16 15 19 19 C 1.41395 * 120.24396 * 179.68245 * 18 17 16 20 20 H 1.07999 * 120.00435 * 204.41363 * 19 18 17 21 21 C 1.39948 * 120.00057 * 24.40889 * 19 18 17 22 22 N 1.30824 * 119.99864 * 17.84702 * 21 19 18 23 23 Si 1.86794 * 120.00417 * 197.84453 * 21 19 18 24 24 H 1.48502 * 109.46887 * 90.00040 * 23 21 19 25 25 H 1.48503 * 109.47571 * 210.00028 * 23 21 19 26 26 H 1.48503 * 109.47166 * 330.00634 * 23 21 19 27 27 C 1.40713 * 119.51552 * 359.71371 * 18 17 16 28 28 C 1.37622 * 119.74224 * 359.97438 * 27 18 17 29 29 H 1.09005 * 109.47311 * 270.00603 * 1 2 3 30 30 H 1.09009 * 109.47216 * 30.00190 * 1 2 3 31 31 H 1.09000 * 109.47408 * 150.00252 * 1 2 3 32 32 H 1.08003 * 125.43330 * 179.97438 * 4 3 2 33 33 H 1.07996 * 127.02550 * 180.26360 * 5 4 3 34 34 H 0.97003 * 120.00261 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46910 * 59.99424 * 10 9 7 36 36 H 1.09004 * 109.47174 * 300.00138 * 10 9 7 37 37 H 0.96999 * 120.00530 * 359.72437 * 13 11 10 38 38 H 1.08997 * 109.47553 * 299.99715 * 14 13 11 39 39 H 1.09005 * 109.47225 * 60.00432 * 14 13 11 40 40 H 1.07997 * 119.87679 * 359.97438 * 16 15 14 41 41 H 1.08000 * 120.13059 * 180.27439 * 17 16 15 42 42 H 0.96994 * 120.00474 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.13146 * 179.97438 * 27 18 17 44 44 H 1.08003 * 119.87690 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7389 0.0006 5 6 3.6848 -0.5992 0.0066 6 6 2.3049 -1.1064 0.0005 7 6 1.8738 -2.5157 0.0018 8 8 0.6889 -2.7892 0.0031 9 7 2.7929 -3.5015 0.0027 10 6 2.3644 -4.9025 0.0045 11 6 3.5761 -5.7984 0.0046 12 8 4.6882 -5.3145 0.0027 13 7 3.4240 -7.1376 0.0067 14 6 4.6020 -8.0085 0.0061 15 6 4.1612 -9.4496 0.0094 16 6 3.9675 -10.1070 1.2146 17 6 3.5596 -11.4213 1.2296 18 6 3.3505 -12.1013 0.0155 19 6 2.9379 -13.4537 0.0185 20 1 3.1484 -14.0845 -0.8324 21 6 2.2566 -13.9749 1.1243 22 7 1.6958 -13.1673 1.9874 23 14 2.1479 -15.8237 1.3681 24 1 3.3049 -16.2852 2.1766 25 1 0.8854 -16.1564 2.0757 26 1 2.1672 -16.4993 0.0458 27 6 3.5558 -11.4257 -1.2017 28 6 3.9575 -10.1095 -1.1927 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 4.4172 1.4284 0.0003 33 1 4.5927 -1.1841 0.0126 34 1 3.7381 -3.2835 0.0021 35 1 1.7664 -5.1007 -0.8849 36 1 1.7671 -5.0986 0.8950 37 1 2.5346 -7.5247 0.0122 38 1 5.1983 -7.8127 -0.8850 39 1 5.2010 -7.8102 0.8950 40 1 4.1335 -9.5846 2.1451 41 1 3.4050 -11.9303 2.1695 42 1 1.2234 -13.5285 2.7536 43 1 3.3986 -11.9382 -2.1393 44 1 4.1153 -9.5888 -2.1257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434123739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:36 Heat of formation + Delta-G solvation = -50.750771 kcal Electronic energy + Delta-G solvation = -27266.513587 eV Core-core repulsion = 23149.681862 eV Total energy + Delta-G solvation = -4116.831725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.88829 -40.08573 -39.03304 -37.72985 -35.01686 -34.49685 -33.52673 -33.32709 -32.16436 -30.62483 -29.43279 -28.70871 -27.19392 -26.29240 -23.86487 -23.14704 -21.36895 -21.13353 -20.52996 -20.20847 -20.01657 -18.43235 -17.43888 -16.90004 -16.68479 -16.48530 -15.90495 -15.78185 -15.45790 -15.27148 -14.68623 -14.58045 -14.16005 -13.84393 -13.80034 -13.59511 -13.38623 -13.24178 -13.20695 -12.98367 -12.77783 -12.57086 -12.09153 -12.06573 -11.95884 -11.73787 -11.21627 -11.09422 -10.78538 -10.50529 -10.23977 -10.15247 -10.00189 -9.72710 -9.53170 -9.36094 -9.27663 -8.89135 -8.80621 -7.62778 -7.50833 -6.91462 -4.51266 1.06351 1.72611 2.41487 2.51002 2.62647 2.85955 2.93703 2.99838 3.02810 3.07969 3.13462 3.64417 3.82326 4.18238 4.46072 4.52537 4.53624 4.82066 4.94365 5.19417 5.21710 5.21944 5.24116 5.37312 5.51580 5.54512 5.72019 5.82008 5.82546 5.95074 6.12425 6.16448 6.21940 6.28420 6.64676 6.68277 6.82084 6.93286 7.12809 7.21297 7.33275 7.46074 7.58592 7.76921 7.91026 7.95549 8.02041 8.14353 8.26291 8.49157 8.74129 8.81548 10.02462 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.001613 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.278263 B =17354.347935 C =17963.344106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.080 3.920 3 O -0.177 6.177 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.247 4.247 7 C 0.593 3.407 8 O -0.544 6.544 9 N -0.709 5.709 10 C 0.099 3.901 11 C 0.502 3.498 12 O -0.553 6.553 13 N -0.709 5.709 14 C 0.185 3.815 15 C -0.249 4.249 16 C -0.081 4.081 17 C -0.169 4.169 18 C 0.116 3.884 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.786 5.786 23 Si 0.910 3.090 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.230 4.230 28 C -0.069 4.069 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.209 0.791 33 H 0.159 0.841 34 H 0.412 0.588 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.405 0.595 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.283 0.717 43 H 0.093 0.907 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 21.460 -1.581 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.027 3.973 3 O -0.073 6.073 4 C -0.105 4.105 5 C -0.205 4.205 6 C -0.251 4.251 7 C 0.381 3.619 8 O -0.423 6.423 9 N -0.363 5.363 10 C -0.028 4.028 11 C 0.287 3.713 12 O -0.432 6.432 13 N -0.360 5.360 14 C 0.064 3.936 15 C -0.251 4.251 16 C -0.100 4.100 17 C -0.189 4.189 18 C 0.114 3.886 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.411 5.411 23 Si 0.734 3.266 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.249 4.249 28 C -0.088 4.088 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.225 0.775 33 H 0.177 0.823 34 H 0.250 0.750 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.240 0.760 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.326 21.849 -1.370 21.894 hybrid contribution 0.222 -1.163 0.216 1.203 sum -0.105 20.686 -1.154 20.719 Atomic orbital electron populations 1.20635 0.83629 1.05158 1.04525 1.22840 0.94163 0.83058 0.97247 1.83777 1.17225 1.34937 1.71352 1.23867 0.83474 0.96399 1.06806 1.22944 0.96774 0.94625 1.06161 1.21070 0.93484 0.93585 1.16966 1.17126 0.85214 0.83700 0.75866 1.90766 1.16488 1.84065 1.50990 1.45461 1.11000 1.04637 1.75252 1.21120 0.95637 0.81022 1.05062 1.20470 0.90353 0.83664 0.76790 1.90657 1.26315 1.75053 1.51200 1.46495 1.11724 1.04942 1.72814 1.19996 0.85853 0.86951 1.00830 1.18955 1.18342 0.93938 0.93881 1.20558 0.99037 0.95211 0.95153 1.21316 1.04628 0.94116 0.98797 1.17686 0.87263 0.92727 0.90957 1.19687 1.31289 0.95721 1.01894 0.90200 1.25962 0.93010 1.00633 0.94757 1.69810 1.23252 1.37329 1.10672 0.86273 0.78498 0.82139 0.79651 1.19146 1.20202 1.18508 1.20976 1.12267 0.94603 0.97065 1.20408 0.98385 0.94695 0.95278 0.89218 0.90360 0.87181 0.77470 0.82324 0.75007 0.88214 0.88178 0.76002 0.92210 0.92181 0.89381 0.86344 0.90626 0.88859 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.89 36.00 0.36 -0.29 16 2 C 0.08 0.79 7.37 -34.97 -0.26 0.54 16 3 O -0.18 -1.60 10.52 7.64 0.08 -1.52 16 4 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 5 C -0.19 -1.61 10.60 -37.45 -0.40 -2.01 16 6 C -0.25 -2.71 6.31 -103.28 -0.65 -3.37 16 7 C 0.59 7.52 7.81 -12.54 -0.10 7.42 16 8 O -0.54 -7.98 14.85 5.27 0.08 -7.91 16 9 N -0.71 -8.45 5.52 -62.58 -0.35 -8.80 16 10 C 0.10 1.16 6.15 -5.19 -0.03 1.13 16 11 C 0.50 7.09 7.90 -10.99 -0.09 7.00 16 12 O -0.55 -9.26 15.67 5.56 0.09 -9.17 16 13 N -0.71 -10.36 5.55 -61.47 -0.34 -10.70 16 14 C 0.19 3.12 5.79 -5.19 -0.03 3.09 16 15 C -0.25 -4.93 5.27 -104.32 -0.55 -5.48 16 16 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 17 C -0.17 -4.12 8.70 -38.87 -0.34 -4.46 16 18 C 0.12 2.93 5.57 -106.83 -0.60 2.33 16 19 C -0.46 -11.52 9.05 -37.74 -0.34 -11.86 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.28 10.95 55.55 0.61 -18.67 16 23 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 27 C -0.23 -5.28 9.80 -38.87 -0.38 -5.66 16 28 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.11 1.00 6.49 -51.93 -0.34 0.67 16 32 H 0.21 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.16 1.12 7.74 -52.49 -0.41 0.71 16 34 H 0.41 4.72 6.61 -40.82 -0.27 4.45 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.40 5.50 8.46 -40.82 -0.35 5.15 16 38 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 42 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 43 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 44 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -29.61 383.32 -8.45 -38.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.45 Total: 13.93 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.91 Total: -13.76 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.08 Total: -38.17 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.25 Total: -18.60 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.61 -8.45 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434123739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.698 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds