Wall clock time and date at job start Wed Apr 1 2020 00:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 5 5 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 6 6 H 1.08990 * 117.49990 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49504 * 214.97638 * 5 2 1 8 8 O 1.21286 * 120.00129 * 359.97438 * 7 5 2 9 9 N 1.34782 * 119.99988 * 179.97438 * 7 5 2 10 10 C 1.46499 * 119.99906 * 179.97438 * 9 7 5 11 11 H 1.09000 * 110.88365 * 34.30758 * 10 9 7 12 12 C 1.54897 * 111.00708 * 270.41863 * 10 9 7 13 13 N 1.47468 * 104.81373 * 204.95163 * 12 10 9 14 14 C 1.34775 * 125.63163 * 204.06991 * 13 12 10 15 15 O 1.21283 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.46919 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99944 * 180.02562 * 17 16 14 19 19 H 1.07990 * 120.00343 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99827 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46999 * 90.00136 * 22 20 18 24 24 H 1.48500 * 109.47255 * 210.00554 * 22 20 18 25 25 H 1.48508 * 109.46926 * 330.00808 * 22 20 18 26 26 C 1.47025 * 108.71944 * 24.07431 * 13 12 10 27 27 C 1.54323 * 107.27231 * 358.97249 * 26 13 12 28 28 H 1.08993 * 110.87092 * 96.24550 * 27 26 13 29 29 O 1.42898 * 110.72117 * 219.44563 * 27 26 13 30 30 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 31 31 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 32 32 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 33 33 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 34 34 H 1.09000 * 109.47300 * 325.69419 * 3 2 1 35 35 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 36 36 H 1.08999 * 117.49685 * 145.02116 * 4 2 1 37 37 H 1.08999 * 117.52022 * 359.97438 * 4 2 1 38 38 H 0.97001 * 119.99599 * 0.02562 * 9 7 5 39 39 H 1.09001 * 110.37215 * 323.75492 * 12 10 9 40 40 H 1.08999 * 110.37156 * 86.08315 * 12 10 9 41 41 H 1.08992 * 109.47550 * 299.99619 * 16 14 13 42 42 H 1.08995 * 109.47391 * 60.00709 * 16 14 13 43 43 H 0.97003 * 120.00032 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.88026 * 239.55824 * 26 13 12 45 45 H 1.09002 * 109.88342 * 118.39699 * 26 13 12 46 46 H 0.96702 * 114.00250 * 293.52488 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2685 7 6 3.5293 -0.7812 1.4607 8 8 3.9721 0.3464 1.4007 9 7 4.1936 -1.7302 2.1497 10 6 5.4506 -1.3999 2.8256 11 1 5.4304 -0.3789 3.2065 12 6 6.6612 -1.6175 1.8840 13 7 7.8026 -1.8569 2.7865 14 6 9.0994 -1.6483 2.4846 15 8 9.4072 -1.2285 1.3892 16 6 10.1671 -1.9366 3.5084 17 16 11.7926 -1.5577 2.8079 18 6 12.8205 -1.9749 4.1768 19 1 12.3789 -2.3410 5.0918 20 6 14.1978 -1.8341 4.0788 21 7 14.7361 -1.3884 2.9633 22 14 15.2876 -2.2757 5.5303 23 1 15.6768 -3.7059 5.4399 24 1 16.5070 -1.4285 5.5096 25 1 14.5450 -2.0438 6.7953 26 6 7.2918 -2.3608 4.0698 27 6 5.7532 -2.4117 3.9624 28 1 5.4159 -3.4114 3.6888 29 8 5.1468 -1.9929 5.1866 30 1 -0.3633 0.0772 1.0248 31 1 -0.3633 0.8489 -0.5791 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1824 1.3085 -0.4455 34 1 1.5812 2.0743 -0.5792 35 1 2.2773 1.7413 1.0248 36 1 3.1715 -0.8750 -1.2684 37 1 1.6115 -1.8587 -1.2683 38 1 3.8396 -2.6321 2.1973 39 1 6.4943 -2.4852 1.2457 40 1 6.8356 -0.7281 1.2785 41 1 9.9999 -1.3199 4.3914 42 1 10.1280 -2.9894 3.7876 43 1 15.6987 -1.2904 2.8947 44 1 7.5851 -1.6878 4.8755 45 1 7.6837 -3.3605 4.2579 46 1 5.3059 -2.5914 5.9293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489323382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:09 Heat of formation + Delta-G solvation = -90.562479 kcal Electronic energy + Delta-G solvation = -27195.738046 eV Core-core repulsion = 23212.623907 eV Total energy + Delta-G solvation = -3983.114139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82973 -39.88878 -38.20426 -37.34509 -35.73297 -34.48909 -32.44631 -30.91419 -29.74259 -28.99350 -28.00234 -27.73786 -25.52804 -24.68415 -23.33836 -21.48047 -20.84555 -19.62703 -19.38488 -18.03404 -17.78275 -17.32060 -16.97121 -16.18813 -15.56975 -15.43220 -15.25226 -14.81998 -14.76913 -14.44795 -14.21202 -14.12110 -13.88801 -13.80595 -13.51363 -13.16960 -12.86354 -12.84362 -12.79455 -12.55916 -12.29123 -12.27827 -12.14383 -11.86911 -11.55657 -11.08434 -11.06962 -11.03902 -10.79045 -10.76521 -10.59276 -10.24565 -9.86156 -9.77587 -9.60516 -9.36127 -9.08251 -8.62776 -8.25924 -6.52527 -6.23098 -3.94217 2.18951 2.49693 2.90189 3.00542 3.21027 3.23267 3.28841 3.36714 3.50297 3.69337 4.02104 4.18027 4.23109 4.24641 4.34560 4.40533 4.51744 4.71761 4.73762 4.91962 4.97733 5.01190 5.11977 5.17316 5.29552 5.31626 5.32312 5.46421 5.52793 5.54778 5.58567 5.66864 5.68652 5.72407 5.76301 5.85982 5.88696 6.01284 6.09035 6.25788 6.31119 7.12630 7.14170 7.52298 7.57976 7.93720 8.33419 8.46974 9.21963 10.84323 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.001997 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.824040 B =14018.041336 C =14757.851676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.146 4.146 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.545 3.455 8 O -0.524 6.524 9 N -0.716 5.716 10 C 0.142 3.858 11 H 0.115 0.885 12 C 0.101 3.899 13 N -0.623 5.623 14 C 0.550 3.450 15 O -0.509 6.509 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.074 3.926 27 C 0.088 3.912 28 H 0.080 0.920 29 O -0.551 6.551 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.408 -4.732 -0.343 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.162 4.162 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.332 3.668 8 O -0.400 6.400 9 N -0.368 5.368 10 C 0.036 3.964 11 H 0.133 0.867 12 C -0.024 4.024 13 N -0.362 5.362 14 C 0.339 3.661 15 O -0.382 6.382 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.051 4.051 27 C 0.028 3.972 28 H 0.098 0.902 29 O -0.356 6.356 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -29.561 -2.706 -2.502 29.790 hybrid contribution 0.442 -1.991 2.759 3.430 sum -29.119 -4.696 0.257 29.496 Atomic orbital electron populations 1.21405 0.91459 1.02286 1.02231 1.21610 0.94717 0.91933 1.01072 1.21380 0.99790 0.92335 1.02721 1.23250 1.03202 1.01417 0.90492 1.22337 0.97518 1.05361 0.95910 0.85980 1.19730 0.84463 0.84624 0.77997 1.90756 1.68341 1.20606 1.60276 1.45741 1.23644 1.13676 1.53695 1.22032 0.83069 1.00912 0.90351 0.86690 1.22491 0.84059 1.02757 0.93051 1.48288 1.05410 1.67883 1.14627 1.20085 0.80782 0.76601 0.88650 1.90729 1.80364 1.43622 1.23487 1.23510 1.00703 1.04661 1.00850 1.85441 0.90609 1.86174 1.21035 1.22848 0.93628 1.51224 1.00704 0.90913 1.24998 0.97097 0.94679 0.96813 1.70016 1.12049 1.42745 1.25383 0.86160 0.79442 0.78457 0.81384 1.20274 1.20715 1.19690 1.22696 0.93531 1.00789 0.88042 1.23024 0.91276 0.97377 0.85543 0.90186 1.86593 1.75993 1.53506 1.19532 0.91966 0.91524 0.92284 0.91519 0.93164 0.91347 0.88034 0.87767 0.76367 0.91145 0.89184 0.89165 0.89251 0.92143 0.89814 0.90415 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.85 37.16 0.37 -0.27 16 2 C -0.09 -0.70 2.70 -154.51 -0.42 -1.12 16 3 C -0.11 -1.00 8.09 37.16 0.30 -0.70 16 4 C -0.15 -0.98 9.52 -26.73 -0.25 -1.23 16 5 C -0.19 -1.37 5.91 -91.77 -0.54 -1.92 16 6 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 7 C 0.55 5.52 7.59 -10.98 -0.08 5.43 16 8 O -0.52 -7.32 12.80 5.55 0.07 -7.25 16 9 N -0.72 -5.85 5.21 -51.73 -0.27 -6.12 16 10 C 0.14 1.46 3.09 -65.79 -0.20 1.26 16 11 H 0.12 1.50 7.63 -51.93 -0.40 1.11 16 12 C 0.10 1.29 6.60 -2.51 -0.02 1.27 16 13 N -0.62 -9.01 3.33 -170.49 -0.57 -9.58 16 14 C 0.55 10.75 7.87 -10.99 -0.09 10.66 16 15 O -0.51 -12.05 16.12 5.55 0.09 -11.96 16 16 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.07 0.74 6.26 -3.06 -0.02 0.73 16 27 C 0.09 0.68 3.97 -24.89 -0.10 0.58 16 28 H 0.08 0.42 7.99 -51.93 -0.42 0.01 16 29 O -0.55 -4.20 13.39 -35.23 -0.47 -4.67 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 32 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 33 H 0.07 0.75 7.01 -51.93 -0.36 0.38 16 34 H 0.05 0.40 7.92 -51.93 -0.41 -0.01 16 35 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 36 H 0.10 0.79 8.05 -51.93 -0.42 0.38 16 37 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.40 2.04 8.54 -40.82 -0.35 1.69 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.38 1.22 9.12 45.56 0.42 1.63 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -37.65 395.77 -8.82 -46.47 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.47 Total: 1.15 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.66 Total: -1.05 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.15 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.31 Total: -23.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.65 -8.82 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489323382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.091 kcal (2) G-P(sol) polarization free energy of solvation -37.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds