Wall clock time and date at job start Wed Apr 1 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47477 * 2 1 4 4 C 1.50700 * 119.99736 * 271.94701 * 3 2 1 5 5 C 1.32996 * 120.00102 * 91.94909 * 3 2 1 6 6 C 1.47105 * 119.99843 * 352.66003 * 5 3 2 7 7 O 1.21610 * 119.99776 * 353.42724 * 6 5 3 8 8 N 1.34773 * 119.99566 * 173.42714 * 6 5 3 9 9 C 1.46499 * 119.99967 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.63940 * 36.68850 * 9 8 6 11 11 C 1.54319 * 110.72140 * 273.54930 * 9 8 6 12 12 N 1.47024 * 107.27153 * 219.44152 * 11 9 8 13 13 C 1.34777 * 125.64895 * 178.90055 * 12 11 9 14 14 O 1.21280 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99686 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46794 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00148 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99632 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00441 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00110 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99617 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47194 * 89.99998 * 21 19 17 23 23 H 1.48503 * 109.46986 * 209.99625 * 21 19 17 24 24 H 1.48500 * 109.47328 * 329.99400 * 21 19 17 25 25 C 1.47428 * 108.70374 * 358.94062 * 12 11 9 26 26 C 1.54905 * 104.83037 * 24.12452 * 25 12 11 27 27 H 1.09001 * 111.00665 * 81.07137 * 26 25 12 28 28 O 1.42904 * 111.00461 * 204.91894 * 26 25 12 29 29 H 1.09000 * 109.46759 * 59.99676 * 1 2 3 30 30 H 1.08993 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46860 * 300.00700 * 1 2 3 32 32 H 1.08997 * 109.47476 * 239.99511 * 2 1 3 33 33 H 1.09005 * 109.47156 * 119.99712 * 2 1 3 34 34 H 1.08998 * 109.47323 * 269.99963 * 4 3 2 35 35 H 1.09003 * 109.46947 * 30.00182 * 4 3 2 36 36 H 1.08995 * 109.46876 * 149.99556 * 4 3 2 37 37 H 1.07998 * 119.99601 * 172.38269 * 5 3 2 38 38 H 0.96998 * 120.00220 * 359.97438 * 8 6 5 39 39 H 1.09003 * 109.88232 * 338.85640 * 11 9 8 40 40 H 1.08998 * 109.88574 * 99.87042 * 11 9 8 41 41 H 1.09001 * 109.47189 * 300.00003 * 15 13 12 42 42 H 1.08993 * 109.47111 * 60.00373 * 15 13 12 43 43 H 0.97005 * 119.99871 * 179.97438 * 20 19 17 44 44 H 1.08993 * 110.37209 * 142.96851 * 25 12 11 45 45 H 1.09005 * 110.36051 * 265.29340 * 25 12 11 46 46 H 0.96702 * 114.00045 * 292.19708 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2418 2.1459 -1.3044 5 6 2.2910 2.0347 1.1511 6 6 1.9362 1.3896 2.4246 7 8 1.3004 0.3530 2.4247 8 7 2.3157 1.9476 3.5913 9 6 1.9618 1.3055 4.8596 10 1 2.0082 0.2204 4.7671 11 6 0.5611 1.7542 5.3267 12 7 0.6238 1.9335 6.7846 13 6 -0.3925 2.3413 7.5703 14 8 -1.4731 2.5947 7.0813 15 6 -0.1865 2.4814 9.0566 16 16 -1.7248 3.0414 9.8287 17 6 -1.2118 3.1180 11.5126 18 1 -0.1994 2.8544 11.7811 19 6 -2.1086 3.5171 12.4939 20 7 -1.7254 3.5739 13.7519 21 14 -3.8597 3.9724 12.0294 22 1 -4.7178 2.7618 12.0875 23 1 -4.3751 4.9905 12.9797 24 1 -3.8783 4.5267 10.6519 25 6 1.9827 1.5942 7.2447 26 6 2.8853 1.8026 6.0031 27 1 3.1348 2.8558 5.8738 28 8 4.0679 1.0051 6.0898 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2606 1.9784 -1.6538 35 1 1.5368 1.7703 -2.0461 36 1 2.0793 3.2135 -1.1567 37 1 2.7657 3.0048 1.1509 38 1 2.8231 2.7742 3.5912 39 1 0.2953 2.6970 4.8484 40 1 -0.1754 0.9909 5.0761 41 1 0.1001 1.5170 9.4761 42 1 0.6020 3.2093 9.2471 43 1 -2.3520 3.8532 14.4377 44 1 2.2876 2.2607 8.0515 45 1 2.0236 0.5557 7.5734 46 1 4.6759 1.2781 6.7905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489332720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:03 Heat of formation + Delta-G solvation = -99.303076 kcal Electronic energy + Delta-G solvation = -27145.564960 eV Core-core repulsion = 23162.071800 eV Total energy + Delta-G solvation = -3983.493160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72409 -39.69683 -38.12392 -36.43703 -35.71189 -34.46012 -32.46646 -31.43180 -30.64845 -29.16955 -28.74553 -27.56173 -25.64425 -24.22980 -23.56734 -21.93774 -21.12760 -19.64242 -19.02989 -18.13101 -17.75791 -17.23120 -17.02894 -16.02476 -15.85059 -15.47182 -15.25761 -15.02421 -14.92867 -14.60183 -14.25357 -14.00855 -13.95730 -13.74301 -13.28522 -13.19232 -13.13303 -12.94866 -12.83410 -12.80706 -12.59726 -12.31640 -12.21700 -11.97083 -11.39434 -11.29537 -11.13872 -11.05282 -11.02557 -10.77323 -10.65326 -9.91276 -9.84638 -9.64194 -9.51966 -9.24854 -9.02845 -8.71273 -8.53392 -6.95735 -6.31576 -4.03861 1.01383 2.48085 2.81019 2.89086 2.97593 3.10422 3.31893 3.48739 3.51182 3.68178 4.00790 4.26518 4.31091 4.38157 4.39696 4.54346 4.65804 4.79285 4.91171 4.97236 5.00827 5.06362 5.07402 5.11276 5.11738 5.24889 5.29978 5.36154 5.42737 5.48249 5.58670 5.66457 5.68324 5.73318 5.87634 5.93956 6.04908 6.06860 6.16265 6.26390 6.29391 7.12438 7.18680 7.42315 7.91300 7.96778 8.33916 8.38312 9.14542 10.77481 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002096 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.419875 B =13355.028579 C =14268.680519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.022 4.022 4 C -0.129 4.129 5 C -0.237 4.237 6 C 0.548 3.452 7 O -0.529 6.529 8 N -0.718 5.718 9 C 0.146 3.854 10 H 0.114 0.886 11 C 0.102 3.898 12 N -0.622 5.622 13 C 0.548 3.452 14 O -0.511 6.511 15 C -0.118 4.118 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.072 3.928 26 C 0.086 3.914 27 H 0.082 0.918 28 O -0.550 6.550 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.402 0.598 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 -3.025 -26.886 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.024 4.024 4 C -0.185 4.185 5 C -0.258 4.258 6 C 0.339 3.661 7 O -0.408 6.408 8 N -0.369 5.369 9 C 0.040 3.960 10 H 0.132 0.868 11 C -0.022 4.022 12 N -0.361 5.361 13 C 0.336 3.664 14 O -0.385 6.385 15 C -0.268 4.268 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.052 4.052 26 C 0.025 3.975 27 H 0.099 0.901 28 O -0.356 6.356 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.144 0.856 38 H 0.237 0.763 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.889 -3.632 -27.859 30.910 hybrid contribution 1.164 0.761 1.290 1.897 sum 14.052 -2.871 -26.569 30.193 Atomic orbital electron populations 1.21530 0.93980 1.01869 1.01568 1.21044 0.97294 0.92437 1.03655 1.22614 0.89542 0.95750 0.94453 1.21016 1.02777 1.00204 0.94514 1.22290 1.09183 1.02553 0.91760 1.18594 0.79172 0.84244 0.84138 1.90757 1.39521 1.23255 1.87221 1.45773 1.57892 1.28279 1.04951 1.21845 0.91959 0.99953 0.82203 0.86774 1.22263 0.96689 1.02311 0.80934 1.48254 1.11360 1.69183 1.07284 1.20043 0.82556 0.75681 0.88084 1.90725 1.24189 1.48284 1.75304 1.23260 1.05285 1.05526 0.92766 1.84834 1.13021 1.87525 1.06057 1.22292 1.02237 1.52987 0.89406 0.89366 1.24708 0.98893 0.93661 0.94021 1.69937 1.36161 1.45547 0.99933 0.86738 0.84398 0.79741 0.80999 1.19158 1.19904 1.15933 1.22978 0.82196 1.02616 0.97454 1.23147 0.85353 0.94854 0.94106 0.90073 1.86553 1.31732 1.58449 1.58821 0.93726 0.92583 0.91691 0.92127 0.87861 0.90387 0.90765 0.91006 0.85603 0.76315 0.90816 0.90222 0.88429 0.88513 0.91910 0.89322 0.89821 0.76568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.44 37.16 0.35 -0.85 16 2 C -0.11 -0.92 5.31 -27.88 -0.15 -1.06 16 3 C -0.02 -0.16 5.36 -101.16 -0.54 -0.70 16 4 C -0.13 -0.59 10.04 36.01 0.36 -0.23 16 5 C -0.24 -1.78 9.62 -37.80 -0.36 -2.15 16 6 C 0.55 5.44 7.60 -12.66 -0.10 5.35 16 7 O -0.53 -6.81 11.36 5.27 0.06 -6.75 16 8 N -0.72 -5.90 5.13 -53.21 -0.27 -6.17 16 9 C 0.15 1.42 2.97 -66.10 -0.20 1.22 16 10 H 0.11 1.31 7.69 -51.93 -0.40 0.91 16 11 C 0.10 1.27 6.62 -3.07 -0.02 1.25 16 12 N -0.62 -8.49 3.33 -170.52 -0.57 -9.06 16 13 C 0.55 10.05 7.87 -10.98 -0.09 9.96 16 14 O -0.51 -11.40 16.19 5.56 0.09 -11.31 16 15 C -0.12 -2.28 5.16 36.01 0.19 -2.09 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 17 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 18 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 21 Si 0.86 21.73 27.74 -169.99 -4.71 17.01 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 C 0.07 0.69 6.43 -2.53 -0.02 0.68 16 26 C 0.09 0.66 4.04 -24.59 -0.10 0.56 16 27 H 0.08 0.49 8.00 -51.93 -0.42 0.07 16 28 O -0.55 -3.94 13.47 -35.23 -0.47 -4.42 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.73 6.87 -51.93 -0.36 0.37 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.10 1.11 5.59 -51.93 -0.29 0.82 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.40 2.23 8.50 -40.82 -0.35 1.89 16 39 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 42 H 0.10 1.70 7.84 -51.92 -0.41 1.29 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 0.75 7.47 -51.93 -0.39 0.37 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.39 1.13 9.12 45.56 0.42 1.55 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -36.55 393.39 -8.03 -44.58 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.41 Total: 1.24 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.46 Total: 0.05 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.06 Total: -40.77 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.32 Total: -22.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.55 -8.03 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489332720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.721 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds