Wall clock time and date at job start Wed Apr 1 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 115.55804 * 2 1 4 4 C 1.53002 * 117.49646 * 214.31267 * 2 1 3 5 5 C 1.52996 * 117.49843 * 145.69129 * 2 1 3 6 6 H 1.09004 * 117.50232 * 359.97438 * 5 2 1 7 7 C 1.50694 * 117.49713 * 214.97795 * 5 2 1 8 8 O 1.21283 * 120.00323 * 0.02562 * 7 5 2 9 9 N 1.34779 * 120.00083 * 179.97438 * 7 5 2 10 10 C 1.46496 * 120.00148 * 180.02562 * 9 7 5 11 11 H 1.09001 * 110.91957 * 31.09945 * 10 9 7 12 12 C 1.54904 * 111.00460 * 267.19580 * 10 9 7 13 13 N 1.47435 * 104.83391 * 204.91748 * 12 10 9 14 14 C 1.34770 * 125.64711 * 204.16592 * 13 12 10 15 15 O 1.21288 * 120.00474 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00086 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47398 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99784 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00252 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99645 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00282 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46696 * 59.99951 * 22 20 18 24 24 H 1.48496 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47207 * 300.00019 * 22 20 18 26 26 C 1.47022 * 108.70089 * 24.12919 * 13 12 10 27 27 C 1.54322 * 107.27269 * 358.93984 * 26 13 12 28 28 H 1.09002 * 110.71963 * 219.44477 * 27 26 13 29 29 O 1.42896 * 110.71801 * 96.34675 * 27 26 13 30 30 H 1.08993 * 109.47111 * 274.31281 * 1 2 3 31 31 H 1.08999 * 109.46679 * 34.30901 * 1 2 3 32 32 H 1.09001 * 109.46963 * 154.31062 * 1 2 3 33 33 H 1.09010 * 109.46710 * 205.68602 * 3 2 1 34 34 H 1.08992 * 109.47349 * 325.68623 * 3 2 1 35 35 H 1.09000 * 109.46886 * 85.69318 * 3 2 1 36 36 H 1.08999 * 117.49788 * 145.02340 * 4 2 1 37 37 H 1.09000 * 117.49796 * 359.97438 * 4 2 1 38 38 H 0.97002 * 120.00060 * 0.02562 * 9 7 5 39 39 H 1.08997 * 110.37110 * 86.08128 * 12 10 9 40 40 H 1.09002 * 110.46118 * 323.80172 * 12 10 9 41 41 H 1.08995 * 109.46989 * 300.00273 * 16 14 13 42 42 H 1.09007 * 109.47008 * 59.99695 * 16 14 13 43 43 H 0.96996 * 120.00217 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.87665 * 239.52284 * 26 13 12 45 45 H 1.08996 * 110.00949 * 118.43459 * 26 13 12 46 46 H 0.96702 * 113.99631 * 63.84596 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2686 7 6 3.5293 -0.7811 1.4607 8 8 3.9716 0.3466 1.4015 9 7 4.1935 -1.7302 2.1497 10 6 5.4500 -1.3996 2.8266 11 1 5.4518 -0.3614 3.1586 12 6 6.6664 -1.6926 1.9133 13 7 7.7899 -1.9163 2.8413 14 6 9.0952 -1.7532 2.5482 15 8 9.4272 -1.3929 1.4387 16 6 10.1424 -2.0185 3.5990 17 16 11.7856 -1.7135 2.9039 18 6 12.7852 -2.0901 4.3051 19 1 12.3229 -2.4004 5.2306 20 6 14.1667 -1.9869 4.2199 21 7 14.7301 -1.6082 3.0921 22 14 15.2265 -2.3854 5.7057 23 1 14.9964 -3.7946 6.1141 24 1 16.6579 -2.1990 5.3570 25 1 14.8677 -1.4802 6.8268 26 6 7.2505 -2.3460 4.1397 27 6 5.7125 -2.3636 4.0137 28 1 5.2466 -1.9889 4.9251 29 8 5.2449 -3.6801 3.7135 30 1 -0.3633 0.0773 1.0247 31 1 -0.3633 0.8489 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1825 1.3084 -0.4455 34 1 1.5812 2.0742 -0.5793 35 1 2.2773 1.7413 1.0248 36 1 3.1716 -0.8752 -1.2683 37 1 1.6112 -1.8587 -1.2680 38 1 3.8396 -2.6320 2.1974 39 1 6.8714 -0.8379 1.2687 40 1 6.4864 -2.5847 1.3134 41 1 9.9789 -1.3572 4.4498 42 1 10.0737 -3.0559 3.9266 43 1 15.6956 -1.5365 3.0324 44 1 7.5508 -1.6431 4.9168 45 1 7.6140 -3.3445 4.3827 46 1 5.4212 -4.3283 4.4092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489569457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:14 Heat of formation + Delta-G solvation = -90.570017 kcal Electronic energy + Delta-G solvation = -27269.327154 eV Core-core repulsion = 23286.212688 eV Total energy + Delta-G solvation = -3983.114466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81343 -39.88673 -38.19716 -37.31884 -35.47943 -34.41613 -32.44133 -30.88683 -29.72172 -29.14727 -27.97439 -27.72962 -25.52231 -24.63590 -23.36016 -21.34836 -20.75210 -19.61560 -19.33979 -18.17729 -17.67371 -17.32771 -16.77184 -16.14773 -15.43798 -15.37841 -15.14954 -14.82806 -14.81533 -14.62438 -14.38023 -14.04191 -13.90631 -13.80753 -13.47423 -13.20487 -13.02695 -12.82902 -12.55820 -12.31018 -12.27604 -12.14719 -12.04217 -11.77097 -11.53937 -11.43963 -11.06039 -11.05122 -10.79108 -10.69532 -10.56617 -10.23053 -9.86041 -9.76714 -9.49836 -9.30437 -9.07215 -8.57527 -8.25429 -6.51929 -6.22511 -3.93719 2.21124 2.53820 2.98007 3.04745 3.22196 3.24923 3.28200 3.39761 3.56247 3.58987 4.11051 4.18088 4.24321 4.26955 4.33125 4.42973 4.58846 4.73830 4.75193 4.98746 5.02389 5.03686 5.12316 5.20145 5.30730 5.31580 5.35158 5.42744 5.55676 5.57054 5.59821 5.69073 5.70789 5.76810 5.80406 5.87102 5.89239 6.06679 6.09568 6.27840 6.35458 7.11049 7.26257 7.56848 7.58832 7.98728 8.33472 8.51055 9.22244 10.84840 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.001984 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.634009 B =14112.269067 C =14748.030364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.189 4.189 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.530 6.530 9 N -0.709 5.709 10 C 0.143 3.857 11 H 0.117 0.883 12 C 0.101 3.899 13 N -0.622 5.622 14 C 0.549 3.451 15 O -0.511 6.511 16 C -0.146 4.146 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.073 3.927 27 C 0.087 3.913 28 H 0.086 0.914 29 O -0.558 6.558 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.709 -2.710 0.693 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.183 4.183 5 C -0.210 4.210 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.407 6.407 9 N -0.361 5.361 10 C 0.037 3.963 11 H 0.135 0.865 12 C -0.023 4.023 13 N -0.361 5.361 14 C 0.338 3.662 15 O -0.384 6.384 16 C -0.297 4.297 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.051 4.051 27 C 0.027 3.973 28 H 0.104 0.896 29 O -0.365 6.365 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.247 0.753 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -29.805 -1.015 -1.665 29.869 hybrid contribution 0.435 -1.652 2.987 3.441 sum -29.371 -2.667 1.322 29.521 Atomic orbital electron populations 1.21403 0.91491 1.02284 1.02181 1.21609 0.94683 0.91920 1.01220 1.21371 0.99786 0.92338 1.02643 1.23245 1.03164 1.01352 0.90580 1.22328 0.97534 1.05205 0.95955 0.85991 1.19777 0.84564 0.84666 0.78088 1.90742 1.68583 1.20768 1.60577 1.45620 1.23174 1.14181 1.53131 1.22167 0.83753 0.99258 0.91146 0.86488 1.22483 0.84658 1.02251 0.92913 1.48303 1.05223 1.69838 1.12695 1.20060 0.80688 0.76338 0.89149 1.90726 1.79672 1.44863 1.23132 1.23507 1.01065 1.04577 1.00533 1.85448 0.90228 1.88937 1.18611 1.22811 0.93583 1.53378 0.98708 0.90986 1.24997 0.96981 0.94661 0.96925 1.70007 1.11291 1.43882 1.25018 0.86219 0.78771 0.78940 0.81530 1.19955 1.20779 1.19934 1.22760 0.93395 1.01620 0.87322 1.23073 0.92433 0.84079 0.97736 0.89617 1.86357 1.82521 1.18837 1.48763 0.92002 0.91556 0.92278 0.91537 0.93217 0.91397 0.88062 0.87775 0.75269 0.89812 0.91072 0.89258 0.89321 0.92087 0.90090 0.90254 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.85 37.16 0.37 -0.27 16 2 C -0.09 -0.72 2.70 -154.51 -0.42 -1.13 16 3 C -0.10 -0.98 8.09 37.16 0.30 -0.68 16 4 C -0.15 -1.04 9.53 -26.73 -0.25 -1.29 16 5 C -0.19 -1.43 5.91 -91.78 -0.54 -1.97 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C 0.54 5.55 7.59 -10.99 -0.08 5.47 16 8 O -0.53 -7.24 12.75 5.55 0.07 -7.17 16 9 N -0.71 -6.21 5.17 -51.73 -0.27 -6.48 16 10 C 0.14 1.43 3.31 -65.78 -0.22 1.21 16 11 H 0.12 1.29 7.54 -51.93 -0.39 0.90 16 12 C 0.10 1.36 6.59 -2.53 -0.02 1.34 16 13 N -0.62 -9.14 3.33 -170.52 -0.57 -9.71 16 14 C 0.55 10.86 7.87 -10.99 -0.09 10.77 16 15 O -0.51 -12.28 16.12 5.55 0.09 -12.19 16 16 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.07 0.72 6.25 -3.06 -0.02 0.70 16 27 C 0.09 0.64 4.19 -24.89 -0.10 0.53 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 O -0.56 -3.54 12.16 -35.23 -0.43 -3.97 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 32 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 33 H 0.07 0.74 7.02 -51.92 -0.36 0.38 16 34 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 35 H 0.07 0.73 7.26 -51.93 -0.38 0.35 16 36 H 0.10 0.84 8.05 -51.93 -0.42 0.43 16 37 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 38 H 0.41 2.93 7.60 -40.82 -0.31 2.62 16 39 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.39 0.98 9.12 45.56 0.42 1.40 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -37.12 393.99 -8.79 -45.91 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.44 Total: 1.78 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.68 Total: -1.11 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.10 Total: -41.68 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.27 Total: -23.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.12 -8.79 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489569457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.660 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds