Wall clock time and date at job start Wed Apr 1 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00031 * 2 1 4 4 C 1.52997 * 109.46791 * 240.00432 * 3 2 1 5 5 O 1.42900 * 109.47187 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47019 * 120.00308 * 3 2 1 7 7 C 1.50697 * 109.47100 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99974 * 0.02562 * 7 6 3 9 9 N 1.34771 * 119.99979 * 179.97438 * 7 6 3 10 10 C 1.47071 * 136.05821 * 354.60553 * 9 7 6 11 11 C 1.53754 * 87.88816 * 152.95779 * 10 9 7 12 12 C 1.47067 * 136.05762 * 174.96333 * 9 7 6 13 13 H 1.08999 * 113.46507 * 92.31436 * 12 9 7 14 14 C 1.53001 * 113.46789 * 321.92989 * 12 9 7 15 15 N 1.46504 * 109.46933 * 175.82640 * 14 12 9 16 16 C 1.34777 * 119.99804 * 184.96057 * 15 14 12 17 17 O 1.21282 * 119.99917 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99905 * 179.97438 * 16 15 14 19 19 S 1.80997 * 109.46920 * 180.02562 * 18 16 15 20 20 C 1.76209 * 99.99764 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00124 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99723 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99685 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46982 * 60.00437 * 24 22 20 26 26 H 1.48500 * 109.46653 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47099 * 300.00026 * 24 22 20 28 28 H 1.07996 * 120.00200 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99504 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47618 * 60.00134 * 4 3 2 32 32 H 1.09007 * 109.46999 * 299.99924 * 4 3 2 33 33 H 1.09001 * 109.47021 * 180.02562 * 4 3 2 34 34 H 0.96704 * 113.99784 * 59.99740 * 5 3 2 35 35 H 1.09002 * 109.46769 * 299.99947 * 6 3 2 36 36 H 1.09004 * 109.46691 * 59.99805 * 6 3 2 37 37 H 1.09007 * 113.46139 * 267.68952 * 10 9 7 38 38 H 1.08994 * 113.46720 * 38.12478 * 10 9 7 39 39 H 1.09004 * 114.39243 * 272.67145 * 11 10 9 40 40 H 1.08997 * 114.26590 * 139.79517 * 11 10 9 41 41 H 1.08994 * 109.47230 * 295.82647 * 14 12 9 42 42 H 1.09000 * 109.47078 * 55.82732 * 14 12 9 43 43 H 0.97000 * 120.00218 * 4.96363 * 15 14 12 44 44 H 1.09002 * 109.47201 * 299.99916 * 18 16 15 45 45 H 1.08998 * 109.47086 * 60.00591 * 18 16 15 46 46 H 0.96998 * 119.99942 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3861 -1.2493 5 8 1.1350 2.3913 0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6972 2.6909 1.2489 8 8 3.5455 3.4787 0.3394 9 7 4.5393 2.9828 2.2599 10 6 4.9085 2.3650 3.5425 11 6 6.2773 3.0535 3.4151 12 6 5.4887 4.0626 2.5690 13 1 5.0508 4.8712 3.1541 14 6 6.2574 4.5666 1.3459 15 7 7.0999 5.7012 1.7321 16 6 7.7951 6.3744 0.7941 17 8 7.7229 6.0412 -0.3698 18 6 8.6613 7.5419 1.1913 19 16 9.4576 8.2307 -0.2809 20 6 10.3808 9.5391 0.4545 21 1 10.3326 9.7008 1.5212 22 6 11.1708 10.3612 -0.3371 23 7 11.2299 10.1638 -1.6372 24 14 12.1489 11.7487 0.4425 25 1 13.0988 11.1871 1.4363 26 1 12.9044 12.4739 -0.6104 27 1 11.2205 12.6884 1.1210 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 2.3164 1.3284 -2.1393 32 1 3.6514 0.5576 -1.2493 33 1 3.4884 2.3299 -1.2491 34 1 0.5439 2.4030 0.7659 35 1 2.3165 1.3283 2.1392 36 1 3.6515 0.5575 1.2491 37 1 4.3175 2.7262 4.3842 38 1 4.9625 1.2772 3.5007 39 1 7.0179 2.4827 2.8549 40 1 6.6633 3.4593 4.3502 41 1 6.8842 3.7651 0.9550 42 1 5.5514 4.8831 0.5781 43 1 7.1574 5.9679 2.6630 44 1 8.0452 8.3077 1.6626 45 1 9.4240 7.2060 1.8938 46 1 11.7817 10.7386 -2.1904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534690873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:28 Heat of formation + Delta-G solvation = -57.498159 kcal Electronic energy + Delta-G solvation = -26945.429522 eV Core-core repulsion = 22963.749159 eV Total energy + Delta-G solvation = -3981.680362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04932 -39.51675 -38.81663 -37.45056 -34.40913 -33.37826 -32.40104 -31.81742 -30.57776 -29.89845 -28.00941 -27.50330 -25.45035 -23.51178 -23.36081 -22.00109 -20.47581 -20.02794 -19.13400 -17.88351 -17.62730 -17.03806 -16.65388 -16.32008 -16.02041 -15.62297 -15.20484 -15.15977 -14.81901 -14.77411 -14.58726 -13.90691 -13.82826 -13.48020 -13.21879 -13.04591 -12.90889 -12.57730 -12.53525 -12.44613 -12.41176 -12.06157 -11.93228 -11.80432 -11.65979 -11.44136 -11.02304 -11.01892 -10.94230 -10.73686 -10.56024 -9.90474 -9.79974 -9.74406 -9.37111 -9.04759 -9.03500 -8.84276 -8.20153 -6.46789 -6.18586 -3.89214 1.73672 2.31823 2.39834 3.11214 3.15201 3.25279 3.29748 3.34917 3.76901 3.81296 3.89363 4.06982 4.23038 4.29569 4.44053 4.49911 4.58121 4.61160 4.75519 4.79737 4.90741 4.91926 5.04293 5.16197 5.21031 5.25774 5.31287 5.36388 5.40530 5.57132 5.60789 5.67518 5.77563 5.79565 5.92962 6.05442 6.06353 6.16175 6.18108 6.30378 6.61246 7.35875 7.40188 7.61680 7.72340 7.94940 8.37639 8.66096 9.26235 10.88768 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.001844 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.556737 B =15183.330607 C =16008.721892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.187 4.187 3 C 0.176 3.824 4 C -0.150 4.150 5 O -0.536 6.536 6 C -0.156 4.156 7 C 0.539 3.461 8 O -0.502 6.502 9 N -0.647 5.647 10 C 0.100 3.900 11 C -0.152 4.152 12 C 0.124 3.876 13 H 0.098 0.902 14 C 0.116 3.884 15 N -0.736 5.736 16 C 0.531 3.469 17 O -0.514 6.514 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.367 0.633 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.397 0.603 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.809 -23.571 15.222 33.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.205 4.205 3 C 0.135 3.865 4 C -0.206 4.206 5 O -0.341 6.341 6 C -0.196 4.196 7 C 0.328 3.672 8 O -0.375 6.375 9 N -0.386 5.386 10 C -0.023 4.023 11 C -0.190 4.190 12 C 0.020 3.980 13 H 0.116 0.884 14 C -0.008 4.008 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.387 6.387 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.214 0.786 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.809 -23.568 11.797 32.379 hybrid contribution 0.342 1.051 3.017 3.213 sum -18.467 -22.517 14.814 32.673 Atomic orbital electron populations 1.23890 0.96031 1.02472 0.99277 1.23599 0.96749 0.98703 1.01490 1.19886 0.87999 0.84160 0.94499 1.21965 0.98884 1.04526 0.95272 1.86777 1.50007 1.48801 1.48509 1.22327 1.00185 0.96471 1.00661 1.20084 0.77722 0.88417 0.80945 1.90768 1.62079 1.49806 1.34875 1.49798 1.42279 1.26825 1.19655 1.23001 0.94135 0.99491 0.85713 1.23636 0.96210 0.97947 1.01173 1.22847 0.87877 0.92099 0.95151 0.88430 1.21407 0.93744 0.89263 0.96428 1.45832 1.48995 1.33512 1.10852 1.20308 0.79391 0.83138 0.85426 1.90724 1.62914 1.66791 1.18287 1.23520 1.01369 0.98058 1.07327 1.85450 1.55946 1.37280 1.04641 1.22831 1.32134 1.17321 0.96174 0.90974 1.24995 0.96250 0.97585 0.94759 1.70012 1.38108 1.38140 1.03996 0.86224 0.79593 0.80917 0.78746 1.19959 1.20822 1.19958 0.88161 0.87666 0.86601 0.91966 0.91782 0.88601 0.78616 0.88915 0.88024 0.89572 0.90203 0.88181 0.88795 0.91466 0.89757 0.76955 0.89208 0.89196 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 13.93 29.01 0.40 -0.64 16 2 C -0.19 -1.19 8.77 -36.03 -0.32 -1.50 16 3 C 0.18 1.49 0.94 -91.77 -0.09 1.40 16 4 C -0.15 -1.56 8.50 37.16 0.32 -1.24 16 5 O -0.54 -5.47 10.85 -53.49 -0.58 -6.05 16 6 C -0.16 -1.07 4.77 -27.88 -0.13 -1.20 16 7 C 0.54 5.72 7.51 -10.99 -0.08 5.64 16 8 O -0.50 -7.70 12.56 -12.70 -0.16 -7.86 16 9 N -0.65 -5.48 3.56 -177.27 -0.63 -6.11 16 10 C 0.10 0.43 8.43 -8.37 -0.07 0.36 16 11 C -0.15 -0.77 8.03 -26.08 -0.21 -0.98 16 12 C 0.12 1.06 4.06 -72.39 -0.29 0.76 16 13 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 14 C 0.12 1.52 5.47 -4.04 -0.02 1.50 16 15 N -0.74 -10.05 5.55 -60.29 -0.33 -10.39 16 16 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 17 O -0.51 -12.39 15.86 5.56 0.09 -12.30 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.11 0.61 6.41 -52.49 -0.34 0.28 16 30 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.31 5.51 -51.93 -0.29 1.03 16 34 H 0.37 2.35 8.05 45.56 0.37 2.71 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.58 7.95 -51.93 -0.41 0.17 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 42 H 0.08 1.44 7.15 -51.93 -0.37 1.06 16 43 H 0.40 3.91 8.48 -40.82 -0.35 3.56 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -39.51 397.55 -8.70 -48.21 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.41 Total: 3.29 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.16 Total: -1.70 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.23 Total: -42.26 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.65 Total: -26.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.51 -8.70 -48.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534690873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.284 kcal (2) G-P(sol) polarization free energy of solvation -39.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds