Wall clock time and date at job start Wed Apr 1 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47028 * 240.00136 * 2 1 3 5 5 C 1.50698 * 109.47004 * 119.99815 * 2 1 3 6 6 O 1.20783 * 120.00151 * 0.02562 * 5 2 1 7 7 C 1.49086 * 119.99781 * 179.97438 * 5 2 1 8 8 O 1.21373 * 120.00161 * 0.02562 * 7 5 2 9 9 N 1.34777 * 119.99971 * 179.72456 * 7 5 2 10 10 C 1.47067 * 136.05683 * 359.91386 * 9 7 5 11 11 C 1.53760 * 87.88814 * 152.96026 * 10 9 7 12 12 C 1.52995 * 114.26771 * 139.79218 * 11 10 9 13 13 N 1.46499 * 109.47487 * 91.47317 * 12 11 10 14 14 C 1.34774 * 120.00221 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99922 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00004 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.47187 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00238 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99868 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00394 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00437 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47080 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47099 * 119.99742 * 22 20 18 25 25 H 1.48497 * 109.47707 * 240.00309 * 22 20 18 26 26 C 1.47072 * 136.05745 * 180.27157 * 9 7 5 27 27 H 1.09007 * 109.47302 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47611 * 59.99921 * 1 2 3 29 29 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47342 * 299.99964 * 3 2 1 32 32 H 1.09001 * 109.47406 * 60.00127 * 3 2 1 33 33 H 1.09003 * 109.47440 * 300.00144 * 4 2 1 34 34 H 1.09003 * 109.47199 * 59.99964 * 4 2 1 35 35 H 1.09001 * 109.47438 * 179.97438 * 4 2 1 36 36 H 1.09004 * 113.46176 * 267.68428 * 10 9 7 37 37 H 1.08996 * 113.46707 * 38.12803 * 10 9 7 38 38 H 1.09004 * 114.38736 * 272.67389 * 11 10 9 39 39 H 1.09002 * 109.46673 * 211.47193 * 12 11 10 40 40 H 1.08998 * 109.46951 * 331.46824 * 12 11 10 41 41 H 0.97003 * 119.99628 * 359.97438 * 13 12 11 42 42 H 1.09002 * 109.47357 * 299.99819 * 16 14 13 43 43 H 1.08998 * 109.47351 * 60.00115 * 16 14 13 44 44 H 0.97001 * 120.00225 * 179.97438 * 21 20 18 45 45 H 1.08997 * 113.46835 * 321.87192 * 26 9 7 46 46 H 1.09003 * 113.46237 * 92.25266 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2474 -1.1698 2.0253 7 6 3.4981 -0.8471 1.4661 8 8 4.2868 -0.3858 0.6672 9 7 3.9473 -1.4775 2.5694 10 6 3.3381 -2.1391 3.7330 11 6 4.6054 -3.0041 3.8330 12 6 5.0892 -3.2477 5.2639 13 7 4.4894 -4.4810 5.7790 14 6 4.7744 -4.8982 7.0284 15 8 5.5270 -4.2524 7.7266 16 6 4.1570 -6.1666 7.5585 17 16 4.7295 -6.4548 9.2512 18 6 3.8788 -7.9553 9.6107 19 1 3.2383 -8.4047 8.8661 20 6 4.0325 -8.5605 10.8503 21 7 4.8135 -8.0131 11.7575 22 14 3.1301 -10.1509 11.2317 23 1 2.3218 -10.5561 10.0537 24 1 4.1158 -11.2164 11.5452 25 1 2.2356 -9.9450 12.3990 26 6 5.2625 -1.8011 3.1425 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.1978 -1.4747 4.5857 37 1 2.4408 -2.7075 3.4886 38 1 4.5814 -3.9094 3.2263 39 1 6.1751 -3.3420 5.2690 40 1 4.7943 -2.4092 5.8947 41 1 3.8872 -4.9974 5.2207 42 1 3.0711 -6.0717 7.5538 43 1 4.4511 -7.0052 6.9274 44 1 4.9207 -8.4357 12.6240 45 1 6.0046 -2.0816 2.3951 46 1 5.6299 -1.0472 3.8388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582132136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:49 Heat of formation + Delta-G solvation = -72.761648 kcal Electronic energy + Delta-G solvation = -26525.239442 eV Core-core repulsion = 22542.897205 eV Total energy + Delta-G solvation = -3982.342237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54612 -40.17789 -39.04477 -38.25905 -36.26341 -34.56299 -32.44491 -31.26999 -29.37606 -27.95146 -27.81296 -26.86096 -26.48598 -25.52947 -24.98353 -21.78375 -20.81144 -20.14174 -18.96598 -17.94991 -17.66070 -17.02777 -16.81601 -16.30013 -16.03249 -15.96187 -15.36526 -15.07187 -14.81968 -14.53597 -14.51302 -14.09528 -13.92088 -13.67637 -13.33768 -13.12192 -13.05865 -13.01581 -12.71652 -12.66465 -12.65787 -12.52038 -12.13709 -12.01836 -11.78548 -11.72781 -11.49072 -11.25977 -11.08740 -11.06089 -11.03654 -10.76966 -9.82791 -9.71263 -9.47860 -9.30270 -9.09689 -8.96893 -8.25422 -6.51980 -6.23498 -3.94104 0.52042 1.94928 2.51755 2.96242 3.04481 3.20498 3.25735 3.29514 3.32021 3.58067 3.86488 4.01053 4.18705 4.30177 4.32377 4.36647 4.48595 4.73011 4.74304 4.82378 5.04268 5.04984 5.07772 5.11930 5.13000 5.13922 5.20475 5.28462 5.32800 5.36730 5.39688 5.44179 5.51696 5.62634 5.63968 5.75924 5.77778 5.81646 5.86691 6.11519 6.43630 6.51806 7.01524 7.41201 7.58246 7.62661 8.33775 8.55034 9.22136 10.83978 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.001657 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.193166 B =16889.207951 C =17652.368379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.144 4.144 5 C 0.363 3.637 6 O -0.411 6.411 7 C 0.504 3.496 8 O -0.507 6.507 9 N -0.626 5.626 10 C 0.105 3.895 11 C -0.138 4.138 12 C 0.134 3.866 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.113 3.887 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 16.206 -26.627 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.201 4.201 5 C 0.232 3.768 6 O -0.279 6.279 7 C 0.290 3.710 8 O -0.383 6.383 9 N -0.363 5.363 10 C -0.018 4.018 11 C -0.157 4.157 12 C 0.009 3.991 13 N -0.394 5.394 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.009 4.009 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.833 17.402 -25.470 31.223 hybrid contribution -1.733 -1.982 -0.766 2.741 sum -6.565 15.421 -26.235 31.132 Atomic orbital electron populations 1.21794 0.91910 1.02975 1.02701 1.20967 0.97515 0.97410 0.93612 1.21919 1.03160 0.92380 1.02681 1.21916 1.03186 0.99798 0.95223 1.24911 0.88083 0.76802 0.87037 1.90422 1.58462 1.35545 1.43483 1.20579 0.90787 0.78523 0.81100 1.90732 1.57174 1.45973 1.44385 1.49601 1.11669 1.54819 1.20178 1.23408 0.97958 0.93377 0.87010 1.23327 0.96729 0.98329 0.97326 1.21121 0.98807 0.88010 0.91117 1.45970 1.50956 1.26472 1.16025 1.20315 0.80887 0.86371 0.80560 1.90712 1.35167 1.56364 1.56820 1.23532 1.03835 0.96809 1.06279 1.85401 1.62346 1.31669 1.04000 1.22909 1.32887 1.09711 1.02851 0.90853 1.24995 0.95332 0.98139 0.95136 1.70026 1.35686 1.38937 1.05616 0.86114 0.79232 0.81714 0.78418 1.19620 1.20568 1.20562 1.23077 0.86831 0.94940 0.96088 0.91888 0.91287 0.91874 0.90246 0.90985 0.92466 0.92452 0.90998 0.90218 0.88563 0.89049 0.86735 0.90584 0.90872 0.76685 0.89153 0.89177 0.92222 0.89377 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 7.76 37.16 0.29 -0.53 16 2 C -0.09 -0.64 0.76 -155.66 -0.12 -0.76 16 3 C -0.14 -0.89 8.29 37.16 0.31 -0.58 16 4 C -0.14 -0.88 8.29 37.16 0.31 -0.58 16 5 C 0.36 3.24 6.03 -29.81 -0.18 3.06 16 6 O -0.41 -4.22 14.81 5.98 0.09 -4.14 16 7 C 0.50 4.97 7.80 -11.76 -0.09 4.87 16 8 O -0.51 -5.82 14.16 5.48 0.08 -5.75 16 9 N -0.63 -5.39 3.69 -185.68 -0.68 -6.07 16 10 C 0.10 0.76 7.20 -8.36 -0.06 0.70 16 11 C -0.14 -0.89 4.11 -89.97 -0.37 -1.26 16 12 C 0.13 1.23 5.59 -4.04 -0.02 1.21 16 13 N -0.74 -8.50 5.56 -60.30 -0.33 -8.84 16 14 C 0.53 9.27 7.85 -10.99 -0.09 9.18 16 15 O -0.52 -11.16 15.86 5.55 0.09 -11.07 16 16 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 19 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 22 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.11 0.77 8.19 -8.50 -0.07 0.70 16 27 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 36 H 0.10 0.67 7.88 -51.93 -0.41 0.26 16 37 H 0.09 0.68 7.38 -51.93 -0.38 0.30 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.71 7.81 -51.93 -0.41 0.31 16 41 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -35.78 398.02 -8.19 -43.97 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.25 Total: -1.74 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.33 Total: 0.47 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.29 Total: -40.10 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.25 Total: -20.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.78 -8.19 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582132136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.794 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds