Wall clock time and date at job start Wed Apr 1 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47529 * 239.99718 * 2 1 3 5 5 C 1.50706 * 109.46804 * 119.99756 * 2 1 3 6 6 O 1.20781 * 119.99916 * 0.02562 * 5 2 1 7 7 C 1.49087 * 119.99564 * 180.02562 * 5 2 1 8 8 O 1.21369 * 120.00536 * 359.97438 * 7 5 2 9 9 N 1.34786 * 119.99681 * 180.02562 * 7 5 2 10 10 C 1.47064 * 136.05599 * 5.06852 * 9 7 5 11 11 C 1.53614 * 88.00062 * 207.03756 * 10 9 7 12 12 C 1.47060 * 136.05454 * 185.02302 * 9 7 5 13 13 H 1.09004 * 113.46217 * 267.74657 * 12 9 7 14 14 C 1.52995 * 113.47225 * 38.12992 * 12 9 7 15 15 N 1.46504 * 109.47406 * 184.23395 * 14 12 9 16 16 C 1.34768 * 120.00026 * 175.01899 * 15 14 12 17 17 O 1.21284 * 120.00322 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99873 * 180.27541 * 16 15 14 19 19 S 1.80993 * 109.47040 * 179.72217 * 18 16 15 20 20 C 1.76199 * 100.00167 * 179.97438 * 19 18 16 21 21 H 1.08008 * 119.99740 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00466 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00076 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99983 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47326 * 89.99548 * 24 22 20 26 26 H 1.48497 * 109.47242 * 209.99919 * 24 22 20 27 27 H 1.48504 * 109.46911 * 330.00120 * 24 22 20 28 28 H 1.08990 * 109.47373 * 300.00120 * 1 2 3 29 29 H 1.09000 * 109.46577 * 60.00437 * 1 2 3 30 30 H 1.08998 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47476 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47174 * 299.99758 * 3 2 1 33 33 H 1.08997 * 109.47187 * 59.99313 * 3 2 1 34 34 H 1.09000 * 109.46739 * 300.00346 * 4 2 1 35 35 H 1.09004 * 109.46860 * 60.00175 * 4 2 1 36 36 H 1.08991 * 109.47260 * 180.02562 * 4 2 1 37 37 H 1.09000 * 113.46612 * 321.86330 * 10 9 7 38 38 H 1.08998 * 113.46591 * 92.24884 * 10 9 7 39 39 H 1.09002 * 114.23504 * 220.40396 * 11 10 9 40 40 H 1.09000 * 114.20992 * 87.55009 * 11 10 9 41 41 H 1.08994 * 109.47221 * 64.23094 * 14 12 9 42 42 H 1.08999 * 109.46851 * 304.23276 * 14 12 9 43 43 H 0.97001 * 119.99452 * 355.01558 * 15 14 12 44 44 H 1.09002 * 109.47131 * 299.72210 * 18 16 15 45 45 H 1.09003 * 109.47172 * 59.72254 * 18 16 15 46 46 H 0.96999 * 119.99939 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 1.2474 -1.1698 2.0253 7 6 3.4981 -0.8461 1.4668 8 8 4.2868 -0.3849 0.6679 9 7 3.9473 -1.4819 2.5671 10 6 3.3419 -2.2294 3.6794 11 6 4.5463 -1.8190 4.5400 12 6 5.2587 -1.7340 3.1830 13 1 5.7112 -2.6752 2.8706 14 6 6.2213 -0.5498 3.0733 15 7 7.5260 -0.9286 3.6215 16 6 8.5650 -0.0742 3.5397 17 8 8.4201 1.0082 3.0120 18 6 9.9088 -0.4663 4.0981 19 16 11.0894 0.8790 3.8298 20 6 12.5297 0.1719 4.5579 21 1 12.4863 -0.8169 4.9904 22 6 13.7201 0.8854 4.5758 23 7 14.7959 0.3573 5.1202 24 14 13.7951 2.5958 3.8285 25 1 13.4634 3.6046 4.8665 26 1 15.1634 2.8501 3.3105 27 1 12.8181 2.6924 2.7143 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2491 35 1 1.6768 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.3978 -1.8069 4.0234 38 1 3.2825 -3.3028 3.4996 39 1 4.9199 -2.6084 5.1923 40 1 4.4293 -0.8597 5.0442 41 1 5.8229 0.2954 3.6345 42 1 6.3346 -0.2696 2.0261 43 1 7.6420 -1.7944 4.0432 44 1 9.8156 -0.6603 5.1666 45 1 10.2628 -1.3661 3.5949 46 1 15.6279 0.8558 5.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584587478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:05 Heat of formation + Delta-G solvation = -96.536546 kcal Electronic energy + Delta-G solvation = -27181.492620 eV Core-core repulsion = 23198.119426 eV Total energy + Delta-G solvation = -3983.373194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27885 -40.99869 -40.29980 -39.00127 -36.81928 -35.79136 -34.66712 -31.90646 -31.04254 -28.92275 -28.37504 -28.31938 -27.82393 -26.77151 -24.27445 -23.47845 -21.99940 -21.06915 -19.98227 -19.53940 -18.52514 -18.00607 -17.78912 -17.41218 -17.10629 -16.77046 -16.69417 -16.48856 -15.87857 -15.70872 -15.28995 -15.14443 -14.92967 -14.83957 -14.65919 -14.37300 -14.15675 -13.72781 -13.59565 -13.52571 -13.35032 -13.15781 -13.09773 -13.06258 -12.97217 -12.75290 -12.66865 -12.61673 -12.35911 -12.00010 -11.90566 -11.85705 -11.63019 -11.17088 -11.09259 -10.52735 -10.39791 -10.20345 -9.99722 -8.99951 -8.51427 -6.22051 -0.19631 0.95821 1.22288 1.30805 1.47541 1.52728 1.57055 1.79658 2.20723 2.25862 2.69110 2.76297 2.86824 3.24547 3.42972 3.61464 3.77533 3.81156 3.82232 3.88418 3.94350 4.20520 4.24388 4.26645 4.37911 4.47324 4.60256 4.61508 4.64068 4.66467 4.77712 4.82179 4.86842 4.87568 4.94181 4.95142 5.15856 5.17323 5.25653 5.26763 5.30099 5.71245 5.76134 6.11996 6.36809 6.42018 6.71082 6.94132 7.16201 8.60670 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.002012 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.443850 B =13911.470819 C =14831.580085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.141 4.141 5 C 0.369 3.631 6 O -0.423 6.423 7 C 0.489 3.511 8 O -0.530 6.530 9 N -0.629 5.629 10 C 0.101 3.899 11 C -0.135 4.135 12 C 0.120 3.880 13 H 0.129 0.871 14 C 0.121 3.879 15 N -0.703 5.703 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.107 4.107 19 S -0.183 6.183 20 C -0.526 4.526 21 H 0.066 0.934 22 C 0.046 3.954 23 N -0.915 5.915 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.239 1.239 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.422 0.578 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.067 -8.597 -5.676 34.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.198 4.198 5 C 0.239 3.761 6 O -0.293 6.293 7 C 0.276 3.724 8 O -0.407 6.407 9 N -0.366 5.366 10 C -0.020 4.020 11 C -0.172 4.172 12 C 0.017 3.983 13 H 0.147 0.853 14 C -0.004 4.004 15 N -0.358 5.358 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.258 4.258 19 S 0.044 5.956 20 C -0.673 4.673 21 H 0.084 0.916 22 C -0.160 4.160 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.164 1.164 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.260 0.740 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -33.260 -6.717 -6.680 34.583 hybrid contribution 1.097 -0.890 0.559 1.519 sum -32.163 -7.607 -6.121 33.612 Atomic orbital electron populations 1.21768 0.90548 1.03023 1.03432 1.21057 0.98439 0.97178 0.92949 1.21904 1.01887 0.92584 1.03641 1.21891 1.01923 1.00252 0.95719 1.25064 0.87302 0.76325 0.87394 1.90368 1.58380 1.36570 1.43950 1.21025 0.91342 0.79859 0.80173 1.90769 1.57770 1.48345 1.43810 1.50004 1.11810 1.51687 1.23106 1.23377 0.99002 0.98056 0.81571 1.23652 0.94339 1.05034 0.94177 1.23243 0.84615 0.97775 0.92640 0.85320 1.21378 0.82555 0.97534 0.98936 1.45419 1.08763 1.20528 1.61136 1.20065 0.85594 0.84085 0.78276 1.90714 1.84498 1.24331 1.44847 1.23245 0.93681 1.02746 1.06152 1.84832 1.05875 1.26078 1.78860 1.22443 0.95854 1.05681 1.43361 0.91597 1.25532 0.94229 1.01749 0.94448 1.70009 1.01473 1.39785 1.44052 0.85894 0.79582 0.80097 0.80968 1.18703 1.18363 1.16350 0.92313 0.89440 0.91997 0.92434 0.89122 0.92372 0.91947 0.89198 0.92286 0.89239 0.86576 0.84703 0.88670 0.92243 0.93156 0.73957 0.86139 0.86473 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 7.76 71.98 0.56 -0.88 16 2 C -0.09 -1.40 0.76 -52.93 -0.04 -1.44 16 3 C -0.14 -2.18 8.29 71.98 0.60 -1.59 16 4 C -0.14 -1.93 8.29 71.98 0.60 -1.33 16 5 C 0.37 6.79 6.03 28.60 0.17 6.96 16 6 O -0.42 -8.04 14.73 -1.51 -0.02 -8.06 16 7 C 0.49 10.67 7.67 87.16 0.67 11.34 16 8 O -0.53 -14.81 12.99 -3.31 -0.04 -14.85 16 9 N -0.63 -10.63 3.57 -835.13 -2.98 -13.61 16 10 C 0.10 0.91 7.71 83.22 0.64 1.55 16 11 C -0.13 -0.95 8.02 30.97 0.25 -0.70 16 12 C 0.12 1.64 4.06 41.79 0.17 1.81 16 13 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 14 C 0.12 2.77 5.47 86.38 0.47 3.24 16 15 N -0.70 -15.88 5.55 -463.07 -2.57 -18.45 16 16 C 0.53 18.40 7.85 87.66 0.69 19.09 16 17 O -0.57 -25.29 15.86 -3.04 -0.05 -25.33 16 18 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 19 S -0.18 -9.28 18.55 -56.49 -1.05 -10.33 16 20 C -0.53 -30.41 10.04 67.95 0.68 -29.73 16 21 H 0.07 3.98 8.03 -2.91 -0.02 3.95 16 22 C 0.05 2.69 5.50 84.86 0.47 3.16 16 23 N -0.92 -55.50 13.97 21.65 0.30 -55.20 16 24 Si 0.91 45.32 27.74 68.60 1.90 47.23 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 28 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.06 1.18 6.43 -2.39 -0.02 1.17 16 32 H 0.09 1.01 8.14 -2.38 -0.02 1.00 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 37 H 0.09 0.90 7.21 -2.39 -0.02 0.88 16 38 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.09 0.87 7.95 -2.39 -0.02 0.85 16 41 H 0.06 1.50 7.89 -2.39 -0.02 1.49 16 42 H 0.05 1.57 7.14 -2.39 -0.02 1.55 16 43 H 0.42 5.77 8.48 -92.71 -0.79 4.99 16 44 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 46 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -81.68 393.00 2.02 -79.66 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.17 Total: 10.95 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.36 Total: 8.00 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -5.25 Total: -87.26 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.11 Total: -48.25 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -1.05 Total: -10.33 kcal Total: -81.68 2.02 -79.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584587478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.881 kcal (2) G-P(sol) polarization free energy of solvation -81.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds