Wall clock time and date at job start Wed Apr 1 2020 00:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37839 * 125.89598 * 2 1 4 4 C 1.47108 * 127.02414 * 359.97438 * 3 2 1 5 5 O 1.21550 * 119.99999 * 0.02562 * 4 3 2 6 6 O 1.34793 * 119.99824 * 180.02562 * 4 3 2 7 7 C 1.46749 * 105.95116 * 180.02562 * 3 2 1 8 8 C 1.34428 * 106.37099 * 0.02562 * 7 3 2 9 9 C 1.50701 * 125.45685 * 179.97438 * 8 7 3 10 10 N 1.46502 * 109.47251 * 95.02137 * 9 8 7 11 11 C 1.34770 * 120.00288 * 180.02562 * 10 9 8 12 12 O 1.21590 * 119.99952 * 0.02562 * 11 10 9 13 13 C 1.47649 * 120.00061 * 179.97438 * 11 10 9 14 14 C 1.40010 * 119.89363 * 359.73574 * 13 11 10 15 15 C 1.36326 * 120.10473 * 179.71914 * 14 13 11 16 16 C 1.40889 * 119.88973 * 0.56784 * 15 14 13 17 17 C 1.41106 * 120.10446 * 179.68162 * 16 15 14 18 18 H 1.07998 * 120.00183 * 204.65110 * 17 16 15 19 19 C 1.40225 * 119.99702 * 24.65190 * 17 16 15 20 20 N 1.30640 * 120.00305 * 17.86410 * 19 17 16 21 21 Si 1.86800 * 119.99905 * 197.86711 * 19 17 16 22 22 H 1.48500 * 109.47241 * 59.99667 * 21 19 17 23 23 H 1.48502 * 109.47462 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47215 * 299.99895 * 21 19 17 25 25 C 1.40891 * 119.79313 * 359.70065 * 16 15 14 26 26 C 1.36314 * 119.89227 * 0.02562 * 25 16 15 27 27 N 1.34625 * 125.89303 * 180.31566 * 2 1 3 28 28 C 1.46497 * 124.81427 * 359.97438 * 27 2 1 29 29 H 1.08990 * 109.47543 * 89.97590 * 1 2 3 30 30 H 1.09001 * 109.46818 * 209.97748 * 1 2 3 31 31 H 1.09000 * 109.46736 * 329.96873 * 1 2 3 32 32 H 0.96700 * 116.99789 * 180.02562 * 6 4 3 33 33 H 1.07994 * 126.81052 * 179.97438 * 7 3 2 34 34 H 1.09001 * 109.47332 * 215.02268 * 9 8 7 35 35 H 1.09005 * 109.47283 * 335.02801 * 9 8 7 36 36 H 0.97007 * 119.99785 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.94916 * 359.97438 * 14 13 11 38 38 H 1.07995 * 120.05352 * 180.24588 * 15 14 13 39 39 H 0.97002 * 120.00131 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.05274 * 179.97438 * 25 16 15 41 41 H 1.07996 * 119.94776 * 179.97438 * 26 25 16 42 42 H 1.09012 * 109.47152 * 270.17330 * 28 27 2 43 43 H 1.08999 * 109.47127 * 30.16707 * 28 27 2 44 44 H 1.08998 * 109.47346 * 150.17834 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8831 2.5228 -0.0005 5 8 0.6984 2.7946 -0.0006 6 8 2.8011 3.5099 -0.0010 7 6 3.6947 0.6160 -0.0006 8 6 3.6109 -0.7256 -0.0015 9 6 4.7816 -1.6747 -0.0030 10 7 5.0857 -2.0771 1.3725 11 6 6.1019 -2.9280 1.6166 12 8 6.7666 -3.3614 0.6953 13 6 6.4087 -3.3331 3.0029 14 6 5.6461 -2.8276 4.0626 15 6 5.9220 -3.2032 5.3437 16 6 6.9841 -4.0922 5.6015 17 6 7.2779 -4.4788 6.9264 18 1 8.2731 -4.8097 7.1843 19 6 6.2777 -4.4332 7.9081 20 7 5.0204 -4.3780 7.5577 21 14 6.7431 -4.4514 9.7171 22 1 7.5974 -3.2751 10.0203 23 1 5.5120 -4.3952 10.5456 24 1 7.4901 -5.6978 10.0236 25 6 7.7523 -4.5938 4.5322 26 6 7.4653 -4.2169 3.2540 27 7 2.2963 -1.0906 -0.0060 28 6 1.8123 -2.4733 -0.0131 29 1 -0.3634 0.0004 -1.0275 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 2.4691 4.4181 -0.0009 33 1 4.5979 1.2081 -0.0012 34 1 4.5335 -2.5568 -0.5932 35 1 5.6502 -1.1795 -0.4371 36 1 4.5556 -1.7311 2.1075 37 1 4.8353 -2.1422 3.8645 38 1 5.3306 -2.8158 6.1602 39 1 4.3285 -4.3468 8.2368 40 1 8.5676 -5.2752 4.7250 41 1 8.0538 -4.6005 2.4338 42 1 1.6897 -2.8206 1.0129 43 1 0.8535 -2.5200 -0.5294 44 1 2.5335 -3.1081 -0.5277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599992720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:31 Heat of formation + Delta-G solvation = -90.349518 kcal Electronic energy + Delta-G solvation = -28281.905095 eV Core-core repulsion = 24163.356239 eV Total energy + Delta-G solvation = -4118.548856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.63433 -40.77680 -40.52092 -38.89936 -36.94318 -35.92299 -35.66955 -33.91887 -32.99317 -31.93072 -31.29234 -29.36625 -28.10073 -27.51960 -25.79431 -23.91434 -23.40085 -22.75482 -21.65073 -21.28402 -19.78674 -19.36172 -18.95018 -18.64709 -17.46744 -17.36869 -17.00814 -16.60072 -16.43897 -16.06548 -16.00958 -15.74919 -15.42293 -15.04696 -14.91081 -14.48782 -14.39140 -14.01444 -13.97480 -13.89936 -13.69819 -13.55158 -13.46933 -13.22249 -13.17385 -12.92106 -12.85017 -12.64946 -12.53177 -12.44654 -12.35960 -11.79476 -11.52660 -11.36982 -11.11824 -10.79802 -10.12687 -9.76964 -9.57184 -9.40574 -9.25958 -8.79713 -6.48258 0.42206 0.44513 1.03522 1.15591 1.38750 1.44385 1.51740 1.63058 2.11814 2.17846 2.21162 2.44723 2.58838 2.78777 3.45572 3.65604 3.69682 3.90342 3.99600 4.19171 4.30449 4.31197 4.33380 4.45721 4.50149 4.56724 4.63126 4.68388 4.72902 4.79075 4.92992 5.01698 5.02901 5.16157 5.20149 5.29990 5.45776 5.58865 5.60831 5.70337 5.82280 5.93837 5.95138 5.99663 6.10384 6.23135 6.54088 6.65478 6.77322 6.89008 7.15108 7.40762 8.15133 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.002380 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.362842 B =11759.585002 C =12757.916693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.132 3.868 3 C -0.267 4.267 4 C 0.562 3.438 5 O -0.557 6.557 6 O -0.512 6.512 7 C -0.120 4.120 8 C -0.015 4.015 9 C 0.199 3.801 10 N -0.722 5.722 11 C 0.577 3.423 12 O -0.601 6.601 13 C -0.292 4.292 14 C -0.052 4.052 15 C -0.198 4.198 16 C 0.102 3.898 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.797 5.797 21 Si 0.986 3.014 22 H -0.259 1.259 23 H -0.264 1.264 24 H -0.258 1.258 25 C -0.254 4.254 26 C -0.031 4.031 27 N -0.423 5.423 28 C 0.053 3.947 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.428 0.572 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.297 0.703 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 8.507 -10.293 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.010 3.990 3 C -0.275 4.275 4 C 0.410 3.590 5 O -0.451 6.451 6 O -0.325 6.325 7 C -0.145 4.145 8 C -0.122 4.122 9 C 0.076 3.924 10 N -0.375 5.375 11 C 0.370 3.630 12 O -0.485 6.485 13 C -0.296 4.296 14 C -0.071 4.071 15 C -0.218 4.218 16 C 0.099 3.901 17 C -0.501 4.501 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.421 5.421 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.182 1.182 25 C -0.273 4.273 26 C -0.050 4.050 27 N -0.097 5.097 28 C -0.087 4.087 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.289 0.711 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.837 7.510 -10.888 17.099 hybrid contribution -0.079 0.655 1.059 1.248 sum -10.916 8.165 -9.828 16.806 Atomic orbital electron populations 1.20676 0.84915 1.04971 1.04580 1.20969 0.94701 0.84599 0.98683 1.19451 0.94117 0.89251 1.24660 1.19801 0.82596 0.85748 0.70865 1.90826 1.19185 1.85054 1.49990 1.84567 1.41794 1.20527 1.85576 1.22065 0.96263 0.92462 1.03662 1.20021 0.84291 0.94282 1.13601 1.19562 0.93251 0.95895 0.83721 1.45870 1.34340 1.48111 1.09152 1.18309 0.78897 0.77231 0.88525 1.90632 1.52454 1.58345 1.47062 1.19148 1.06082 1.12699 0.91695 1.20678 0.96919 0.97189 0.92352 1.20997 1.02538 1.02215 0.96030 1.18126 0.90564 0.88132 0.93300 1.20098 0.98278 1.38083 0.93663 0.89653 1.26900 0.93858 0.90871 1.06409 1.69750 1.01780 1.31563 1.38978 0.85182 0.79189 0.80289 0.74780 1.18327 1.18820 1.18231 1.20865 1.06200 1.07706 0.92528 1.20516 0.94574 0.94050 0.95885 1.43673 1.04872 1.07417 1.53783 1.22491 1.03116 0.78026 1.05105 0.88756 0.88928 0.89498 0.71069 0.82466 0.90588 0.89458 0.75847 0.86404 0.87043 0.89206 0.87785 0.87676 0.89606 0.86583 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.28 71.24 0.66 -0.73 16 2 C 0.13 2.64 6.93 42.04 0.29 2.93 16 3 C -0.27 -6.29 6.33 -18.82 -0.12 -6.40 16 4 C 0.56 13.23 8.32 70.15 0.58 13.81 16 5 O -0.56 -14.89 15.66 19.67 0.31 -14.58 16 6 O -0.51 -9.36 13.33 -57.04 -0.76 -10.12 16 7 C -0.12 -2.77 10.89 23.62 0.26 -2.51 16 8 C -0.01 -0.32 6.21 40.97 0.25 -0.07 16 9 C 0.20 4.89 5.77 85.63 0.49 5.39 16 10 N -0.72 -21.61 5.50 -469.88 -2.58 -24.19 16 11 C 0.58 22.74 7.76 86.73 0.67 23.41 16 12 O -0.60 -26.77 16.32 -4.00 -0.07 -26.84 16 13 C -0.29 -12.80 5.89 -19.93 -0.12 -12.92 16 14 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 15 C -0.20 -9.65 8.64 22.47 0.19 -9.46 16 16 C 0.10 5.21 5.58 -21.28 -0.12 5.10 16 17 C -0.47 -23.64 9.04 23.46 0.21 -23.42 16 18 H 0.09 4.07 7.91 -2.91 -0.02 4.05 16 19 C 0.04 1.78 5.14 85.35 0.44 2.22 16 20 N -0.80 -37.55 10.95 21.87 0.24 -37.31 16 21 Si 0.99 34.37 29.60 68.60 2.03 36.41 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 23 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 24 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 25 C -0.25 -12.32 9.73 22.47 0.22 -12.10 16 26 C -0.03 -1.45 9.52 22.25 0.21 -1.23 16 27 N -0.42 -7.91 3.08 -517.74 -1.60 -9.51 16 28 C 0.05 0.67 10.39 127.77 1.33 1.99 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 0.93 7.60 -2.39 -0.02 0.91 16 31 H 0.09 1.59 6.51 -2.39 -0.02 1.58 16 32 H 0.43 3.66 9.11 -74.06 -0.67 2.98 16 33 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.08 1.81 7.09 -2.39 -0.02 1.79 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.41 11.29 6.47 -92.70 -0.60 10.69 16 37 H 0.12 4.18 6.37 -2.91 -0.02 4.16 16 38 H 0.11 5.53 6.16 -2.91 -0.02 5.51 16 39 H 0.30 12.45 8.29 -92.71 -0.77 11.68 16 40 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.11 4.72 7.63 -2.91 -0.02 4.70 16 42 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.12 0.82 7.50 -2.39 -0.02 0.80 16 44 H 0.09 1.19 6.97 -2.39 -0.02 1.18 16 Total: -1.00 -66.97 378.81 3.05 -63.92 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.19 Total: 38.27 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.67 Total: -16.04 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -3.94 Total: -71.01 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.52 Total: -51.55 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.41 kcal Total: -66.97 3.05 -63.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599992720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.428 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds