Wall clock time and date at job start Wed Apr 1 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38863 * 119.46946 * 2 1 4 4 C 1.38816 * 120.71627 * 179.97438 * 3 2 1 5 5 C 1.47285 * 120.33680 * 179.97438 * 4 3 2 6 6 O 1.21656 * 120.00053 * 210.59002 * 5 4 3 7 7 N 1.34779 * 120.00149 * 30.59483 * 5 4 3 8 8 C 1.36802 * 120.00050 * 172.39239 * 7 5 4 9 9 H 1.08004 * 120.00243 * 133.38790 * 8 7 5 10 10 C 1.39076 * 120.00199 * 313.66807 * 8 7 5 11 11 N 1.31347 * 119.99751 * 5.05492 * 10 8 7 12 12 Si 1.86803 * 120.00181 * 185.06259 * 10 8 7 13 13 H 1.48497 * 109.47455 * 64.99597 * 12 10 8 14 14 H 1.48506 * 109.47082 * 184.99784 * 12 10 8 15 15 H 1.48497 * 109.47021 * 304.99236 * 12 10 8 16 16 C 1.46500 * 119.99854 * 352.38507 * 7 5 4 17 17 C 1.52992 * 109.47397 * 259.09780 * 16 7 5 18 18 C 1.50706 * 109.47307 * 180.02562 * 17 16 7 19 19 O 1.20829 * 119.99728 * 359.97438 * 18 17 16 20 20 O 1.34225 * 120.00267 * 180.02562 * 18 17 16 21 21 C 1.41877 * 119.32134 * 0.24903 * 4 3 2 22 22 N 1.33323 * 121.04763 * 180.37094 * 21 4 3 23 23 C 1.31248 * 121.35470 * 179.66759 * 22 21 4 24 24 C 1.39226 * 121.68886 * 359.71084 * 23 22 21 25 25 C 1.36644 * 119.89805 * 359.97438 * 24 23 22 26 26 C 1.50706 * 120.92022 * 180.02562 * 25 24 23 27 27 C 1.40793 * 118.15693 * 0.02562 * 25 24 23 28 28 C 1.36350 * 119.46532 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46866 * 94.97137 * 1 2 3 30 30 H 1.09003 * 109.47534 * 214.97258 * 1 2 3 31 31 H 1.08992 * 109.46937 * 334.97572 * 1 2 3 32 32 H 1.07997 * 119.63792 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99585 * 184.99625 * 11 10 8 34 34 H 1.09000 * 109.46960 * 19.10083 * 16 7 5 35 35 H 1.09003 * 109.46858 * 139.09665 * 16 7 5 36 36 H 1.09000 * 109.47312 * 300.00087 * 17 16 7 37 37 H 1.09003 * 109.47210 * 60.00101 * 17 16 7 38 38 H 0.96697 * 117.00101 * 180.02562 * 20 18 17 39 39 H 1.07998 * 119.15706 * 179.72836 * 23 22 21 40 40 H 1.07997 * 120.04700 * 179.97438 * 24 23 22 41 41 H 1.08996 * 109.47034 * 269.97549 * 26 25 24 42 42 H 1.09004 * 109.46874 * 29.98262 * 26 25 24 43 43 H 1.08998 * 109.46993 * 149.97686 * 26 25 24 44 44 H 1.08001 * 119.94681 * 0.03046 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2090 0.0000 4 6 3.5780 1.2392 0.0005 5 6 4.2941 2.5262 0.0000 6 8 5.3826 2.6165 -0.5358 7 7 3.7435 3.6040 0.5931 8 6 4.4700 4.7550 0.7303 9 1 4.0291 5.7062 0.4706 10 6 5.7784 4.6999 1.1985 11 7 6.3501 3.5373 1.4147 12 14 6.7227 6.2793 1.5203 13 1 6.0757 7.0257 2.6290 14 1 8.1221 5.9519 1.8943 15 1 6.7211 7.1156 0.2932 16 6 2.3670 3.5429 1.0907 17 6 1.4328 4.2295 0.0924 18 6 0.0168 4.1672 0.6047 19 8 -0.2207 3.6285 1.6598 20 8 -0.9805 4.7092 -0.1116 21 6 4.2995 0.0176 -0.0043 22 7 5.6327 0.0064 0.0034 23 6 6.3062 -1.1201 0.0055 24 6 5.6647 -2.3558 0.0058 25 6 4.2995 -2.4144 0.0043 26 6 3.5813 -3.7394 0.0052 27 6 3.5824 -1.2028 0.0021 28 6 2.1777 -1.1871 0.0005 29 1 -0.3633 -0.0891 -1.0238 30 1 -0.3634 -0.8421 0.5890 31 1 -0.3633 0.9311 0.4347 32 1 1.6357 2.1357 -0.0004 33 1 7.2354 3.4981 1.8092 34 1 2.0695 2.5011 1.2095 35 1 2.3059 4.0502 2.0536 36 1 1.7303 5.2713 -0.0263 37 1 1.4938 3.7222 -0.8704 38 1 -1.8718 4.6448 0.2579 39 1 7.3857 -1.0878 0.0074 40 1 6.2452 -3.2664 0.0071 41 1 3.4089 -4.0598 -1.0223 42 1 4.1902 -4.4823 0.5203 43 1 2.6254 -3.6341 0.5182 44 1 1.6282 -2.1169 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600077901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:25 Heat of formation + Delta-G solvation = -24.137891 kcal Electronic energy + Delta-G solvation = -30619.014456 eV Core-core repulsion = 26503.336752 eV Total energy + Delta-G solvation = -4115.677704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73548 -40.09806 -38.42406 -36.82461 -36.06247 -34.59491 -34.14316 -32.42453 -31.66947 -30.12241 -29.98210 -28.05068 -26.41881 -25.25571 -24.49215 -23.17058 -22.38295 -21.38380 -20.66105 -19.02921 -18.00544 -17.85473 -16.90763 -16.54502 -16.09794 -15.93310 -15.86491 -15.15193 -14.68200 -14.41012 -14.24154 -13.88738 -13.65410 -13.49858 -13.36605 -13.28511 -12.89570 -12.80463 -12.59929 -12.55725 -12.40321 -12.08960 -11.80597 -11.52560 -11.40212 -11.28493 -11.18456 -11.04349 -10.89390 -10.87648 -10.53966 -10.41142 -10.26940 -10.03614 -9.56964 -8.83514 -8.72465 -8.23490 -7.85455 -7.57768 -7.06733 -5.97362 -3.87645 0.68292 1.21587 2.26908 2.35922 3.15931 3.22057 3.33377 3.37546 3.38783 4.23445 4.40286 4.66511 4.72850 4.90735 4.95857 4.98965 5.00703 5.13334 5.21372 5.29351 5.33521 5.39432 5.43095 5.51473 5.53838 5.61071 5.62390 5.66365 5.72810 5.86458 5.92666 5.97087 6.06471 6.19071 6.26989 6.32485 6.34509 6.47518 6.54624 6.68368 6.71666 6.79880 6.92522 7.24270 7.61268 8.01637 8.28255 8.61045 9.09873 9.24699 9.64070 10.43193 11.02510 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.005732 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.156028 B = 4883.963061 C = 7954.785562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.057 4.057 5 C 0.509 3.491 6 O -0.476 6.476 7 N -0.452 5.452 8 C -0.336 4.336 9 H 0.079 0.921 10 C 0.052 3.948 11 N -0.801 5.801 12 Si 0.912 3.088 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.082 3.918 17 C -0.138 4.138 18 C 0.480 3.520 19 O -0.515 6.515 20 O -0.520 6.520 21 C 0.153 3.847 22 N -0.411 5.411 23 C 0.114 3.886 24 C -0.178 4.178 25 C -0.045 4.045 26 C -0.112 4.112 27 C -0.097 4.097 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.404 0.596 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 -10.071 -2.524 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.061 4.061 5 C 0.296 3.704 6 O -0.349 6.349 7 N -0.176 5.176 8 C -0.463 4.463 9 H 0.097 0.903 10 C -0.160 4.160 11 N -0.434 5.434 12 Si 0.739 3.261 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.043 4.043 17 C -0.177 4.177 18 C 0.323 3.677 19 O -0.403 6.403 20 O -0.332 6.332 21 C 0.029 3.971 22 N -0.117 5.117 23 C -0.059 4.059 24 C -0.198 4.198 25 C -0.054 4.054 26 C -0.169 4.169 27 C -0.099 4.099 28 C -0.132 4.132 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.262 0.738 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.211 -9.354 -2.686 14.106 hybrid contribution -0.488 -0.101 0.630 0.803 sum -10.699 -9.455 -2.056 14.426 Atomic orbital electron populations 1.20813 0.91156 1.02948 1.02077 1.19560 0.96086 0.92961 0.99490 1.22171 0.93776 0.98693 1.00269 1.20712 0.92751 0.94892 0.97766 1.17487 0.87031 0.82557 0.83284 1.90665 1.18953 1.82961 1.42286 1.43078 1.09651 1.12198 1.52652 1.18942 0.95937 0.85264 1.46192 0.90307 1.25493 0.97604 0.96847 0.96047 1.70059 1.14622 1.23552 1.35168 0.86281 0.78802 0.82431 0.78598 1.20349 1.21157 1.20005 1.22230 0.84639 1.01777 0.95624 1.22048 0.86523 1.06503 1.02578 1.23777 0.88190 0.73716 0.82050 1.90716 1.84767 1.41587 1.23192 1.84595 1.20350 1.74483 1.53763 1.18733 0.89635 0.91212 0.97476 1.68329 1.06871 1.28780 1.07748 1.23034 1.00618 0.87321 0.94958 1.21742 0.94557 0.99595 1.03896 1.20007 0.93913 0.94416 0.97030 1.20781 1.00459 0.93132 1.02520 1.18647 0.94511 0.93408 1.03381 1.20747 0.92330 0.97669 1.02465 0.91224 0.91535 0.91454 0.82953 0.92644 0.88351 0.90867 0.86600 0.87764 0.73821 0.83019 0.85313 0.90792 0.91183 0.91101 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.98 36.01 0.36 -0.94 16 2 C -0.08 -1.24 5.84 -105.07 -0.61 -1.85 16 3 C -0.13 -2.37 7.10 -39.14 -0.28 -2.64 16 4 C -0.06 -1.29 5.63 -104.61 -0.59 -1.88 16 5 C 0.51 13.58 6.39 -12.58 -0.08 13.50 16 6 O -0.48 -14.60 13.32 5.23 0.07 -14.53 16 7 N -0.45 -11.34 2.58 -116.09 -0.30 -11.64 16 8 C -0.34 -9.05 9.08 -15.02 -0.14 -9.19 16 9 H 0.08 1.99 7.81 -52.48 -0.41 1.58 16 10 C 0.05 1.45 5.06 -17.45 -0.09 1.36 16 11 N -0.80 -24.00 10.62 55.50 0.59 -23.41 16 12 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.08 1.64 4.14 -4.05 -0.02 1.62 16 17 C -0.14 -2.18 5.13 -27.88 -0.14 -2.33 16 18 C 0.48 6.75 8.18 36.01 0.29 7.05 16 19 O -0.51 -8.43 16.74 -18.75 -0.31 -8.75 16 20 O -0.52 -5.63 13.42 -39.25 -0.53 -6.16 16 21 C 0.15 3.36 6.58 -84.57 -0.56 2.81 16 22 N -0.41 -9.52 8.87 -10.75 -0.10 -9.62 16 23 C 0.11 2.04 11.15 -17.43 -0.19 1.85 16 24 C -0.18 -2.57 9.72 -39.79 -0.39 -2.96 16 25 C -0.05 -0.66 5.92 -104.23 -0.62 -1.28 16 26 C -0.11 -1.12 9.59 36.01 0.35 -0.77 16 27 C -0.10 -1.71 5.74 -106.83 -0.61 -2.33 16 28 C -0.11 -1.69 8.93 -39.42 -0.35 -2.04 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 32 H 0.15 2.61 2.74 -52.49 -0.14 2.46 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.10 1.93 3.71 -55.04 -0.20 1.73 16 35 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 36 H 0.12 1.81 8.10 -51.93 -0.42 1.39 16 37 H 0.10 1.57 7.27 -51.93 -0.38 1.19 16 38 H 0.40 2.50 9.10 45.56 0.41 2.91 16 39 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.07 0.65 6.51 -51.93 -0.34 0.31 16 44 H 0.12 1.43 6.42 -52.49 -0.34 1.09 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -37.27 365.29 -8.08 -45.35 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.32 Total: 6.88 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -3.67 Total: -0.03 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.19 Total: -44.67 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.77 Total: -29.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.27 -8.08 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.213 kcal (2) G-P(sol) polarization free energy of solvation -37.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds