Wall clock time and date at job start Wed Apr 1 2020 00:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38224 * 119.61920 * 2 1 4 4 C 1.38629 * 119.15840 * 180.02562 * 3 2 1 5 5 C 1.38672 * 118.42201 * 0.25097 * 4 3 2 6 6 C 1.38176 * 119.16403 * 359.48100 * 5 4 3 7 7 C 1.50695 * 119.62197 * 180.25141 * 6 5 4 8 8 O 1.42904 * 109.47157 * 0.27558 * 7 6 5 9 9 N 1.41595 * 114.00324 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00226 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99695 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00413 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.38326 * 119.96651 * 269.72140 * 13 12 10 15 15 C 1.38276 * 120.13924 * 179.76458 * 14 13 12 16 16 C 1.38121 * 120.06638 * 0.51545 * 15 14 13 17 17 C 1.38853 * 119.93237 * 359.74485 * 16 15 14 18 18 O 1.35749 * 120.06986 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00166 * 354.48678 * 18 17 16 20 20 H 1.08003 * 119.99875 * 5.05617 * 19 18 17 21 21 C 1.38654 * 120.00393 * 185.05648 * 19 18 17 22 22 N 1.31552 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47190 * 60.00194 * 23 21 19 25 25 H 1.48500 * 109.47010 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47393 * 300.00235 * 23 21 19 27 27 C 1.38076 * 119.96692 * 90.00188 * 13 12 10 28 28 N 1.31859 * 119.61618 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47157 * 89.99690 * 1 2 3 30 30 H 1.08994 * 109.47030 * 210.00023 * 1 2 3 31 31 H 1.08998 * 109.46624 * 329.99925 * 1 2 3 32 32 H 1.07999 * 120.42387 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.78535 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.41923 * 179.75274 * 5 4 3 35 35 H 1.08995 * 109.47539 * 120.28227 * 7 6 5 36 36 H 1.09009 * 109.47198 * 240.27980 * 7 6 5 37 37 H 0.97003 * 119.99973 * 0.02562 * 9 8 7 38 38 H 1.09003 * 109.47148 * 300.00034 * 12 10 9 39 39 H 1.09011 * 109.46982 * 59.99610 * 12 10 9 40 40 H 1.08001 * 119.93037 * 0.02562 * 14 13 12 41 41 H 1.07996 * 119.96545 * 180.25372 * 15 14 13 42 42 H 1.08004 * 120.03230 * 179.76829 * 16 15 14 43 43 H 0.97004 * 120.00309 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.03497 * 359.95362 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0064 6 6 3.4767 -1.1949 -0.0006 7 6 4.1726 -2.5315 -0.0011 8 8 5.5876 -2.3318 -0.0016 9 7 6.3387 -3.5321 -0.0016 10 6 7.6856 -3.4842 -0.0015 11 8 8.2543 -2.4130 -0.0020 12 6 8.4850 -4.7617 -0.0021 13 6 9.9559 -4.4339 -0.0025 14 6 10.6311 -4.2890 -1.2011 15 6 11.9797 -3.9834 -1.2057 16 6 12.6591 -3.8323 -0.0126 17 6 11.9853 -3.9824 1.1922 18 8 12.6504 -3.8351 2.3663 19 6 13.9850 -3.6568 2.2957 20 1 14.4660 -3.5546 1.3342 21 6 14.7400 -3.6047 3.4575 22 7 14.1540 -3.7288 4.6288 23 14 16.5891 -3.3585 3.3596 24 1 16.8816 -2.0690 2.6837 25 1 17.1592 -3.3397 4.7307 26 1 17.1965 -4.4715 2.5866 27 6 10.6295 -4.2841 1.1934 28 7 2.1587 -1.1463 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6509 2.1373 -0.0004 33 1 4.1367 2.1139 -0.0010 34 1 5.3057 -0.0807 -0.0110 35 1 3.8850 -3.0913 0.8888 36 1 3.8843 -3.0909 -0.8912 37 1 5.8839 -4.3889 -0.0016 38 1 8.2422 -5.3427 0.8877 39 1 8.2421 -5.3420 -0.8924 40 1 10.1030 -4.4107 -2.1352 41 1 12.5032 -3.8669 -2.1431 42 1 13.7132 -3.5973 -0.0169 43 1 14.6822 -3.6928 5.4417 44 1 10.1027 -4.4010 2.1289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630758111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:56 Heat of formation + Delta-G solvation = -19.117671 kcal Electronic energy + Delta-G solvation = -27265.277742 eV Core-core repulsion = 23149.817731 eV Total energy + Delta-G solvation = -4115.460011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41453 -41.05733 -40.31517 -38.61431 -37.95755 -34.62437 -34.33157 -33.79564 -33.64581 -32.60939 -30.84818 -29.26487 -28.21134 -27.43606 -27.14050 -23.59500 -23.32333 -22.96085 -22.86063 -21.64019 -19.63140 -19.16923 -18.63895 -18.26526 -17.40535 -17.14903 -17.13394 -16.74396 -16.49297 -16.18845 -16.11646 -15.81906 -15.59325 -15.32566 -15.19609 -14.91342 -14.69861 -14.31427 -14.03138 -13.99318 -13.60219 -13.48336 -13.42957 -13.06973 -12.94900 -12.84762 -12.68726 -12.46159 -12.39846 -12.33546 -12.20320 -12.12184 -11.19887 -11.13734 -10.88058 -10.78400 -10.56733 -10.07603 -9.79780 -9.64307 -8.96496 -8.45703 -6.14269 0.00074 0.21331 0.35835 0.75557 0.89729 1.34545 1.46089 1.51187 1.60736 2.18795 2.64284 2.80514 2.97110 3.18350 3.43809 3.52384 3.65906 3.74193 3.84119 3.95329 4.05535 4.12771 4.18680 4.22234 4.30272 4.33949 4.44623 4.54231 4.59409 4.61735 4.64818 4.75698 4.76248 4.80087 5.07212 5.13559 5.14339 5.17650 5.20633 5.32147 5.65396 5.66507 5.70016 5.73992 5.76359 6.03888 6.23018 6.34555 6.85406 6.98684 7.28172 7.80522 8.77571 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.001738 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.604985 B =16110.955654 C =16856.415943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.118 3.882 3 C -0.170 4.170 4 C -0.074 4.074 5 C -0.180 4.180 6 C 0.117 3.883 7 C 0.088 3.912 8 O -0.171 6.171 9 N -0.581 5.581 10 C 0.525 3.475 11 O -0.567 6.567 12 C -0.072 4.072 13 C -0.031 4.031 14 C -0.176 4.176 15 C -0.076 4.076 16 C -0.245 4.245 17 C 0.109 3.891 18 O -0.235 6.235 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.255 1.255 27 C -0.189 4.189 28 N -0.499 5.499 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.431 0.569 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.951 1.750 -13.748 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 C -0.189 4.189 4 C -0.100 4.100 5 C -0.200 4.200 6 C -0.021 4.021 7 C 0.011 3.989 8 O -0.175 6.175 9 N -0.286 5.286 10 C 0.314 3.686 11 O -0.443 6.443 12 C -0.111 4.111 13 C -0.032 4.032 14 C -0.195 4.195 15 C -0.094 4.094 16 C -0.264 4.264 17 C 0.059 3.941 18 O -0.142 6.142 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.179 1.179 27 C -0.208 4.208 28 N -0.212 5.212 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.275 0.725 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.961 1.914 -13.300 30.124 hybrid contribution 1.246 0.756 0.555 1.560 sum -25.715 2.670 -12.744 28.824 Atomic orbital electron populations 1.20811 0.86147 1.04572 1.04188 1.21864 0.98572 0.87774 0.93825 1.22365 0.94596 1.00453 1.01507 1.21972 0.95316 0.98545 0.94118 1.22020 1.01795 0.93818 1.02350 1.20605 0.89853 0.94372 0.97280 1.21402 0.78818 0.94102 1.04544 1.90554 1.17101 1.12306 1.97565 1.47448 1.02728 1.00463 1.77959 1.21415 0.79739 0.92397 0.75071 1.90787 1.70517 1.33136 1.49888 1.20634 0.88095 0.93069 1.09310 1.19141 0.94562 0.97688 0.91820 1.21024 0.94433 1.06266 0.97758 1.21145 0.95018 0.96366 0.96844 1.21316 1.01105 1.11163 0.92824 1.19900 0.93195 0.94425 0.86611 1.83933 1.22151 1.80940 1.27165 1.21785 0.79913 1.51854 0.95552 0.88252 1.26606 1.05987 0.96106 0.93432 1.70184 1.38662 1.48801 0.98361 0.84640 0.73406 0.79765 0.78327 1.18424 1.19523 1.17923 1.20261 0.91782 1.09892 0.98914 1.67045 1.08336 1.31296 1.14502 0.89148 0.90705 0.88321 0.81383 0.82566 0.85515 0.88382 0.87848 0.72463 0.84720 0.82412 0.83107 0.83680 0.86502 0.91885 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 71.24 0.72 -0.13 16 2 C 0.12 1.87 6.78 42.55 0.29 2.16 16 3 C -0.17 -2.33 9.74 22.36 0.22 -2.11 16 4 C -0.07 -1.26 10.18 22.47 0.23 -1.03 16 5 C -0.18 -4.00 9.41 22.36 0.21 -3.79 16 6 C 0.12 2.49 6.78 42.53 0.29 2.78 16 7 C 0.09 1.54 6.77 71.23 0.48 2.02 16 8 O -0.17 -4.16 9.56 -21.38 -0.20 -4.36 16 9 N -0.58 -11.42 6.39 -173.53 -1.11 -12.53 16 10 C 0.53 14.37 7.97 87.66 0.70 15.07 16 11 O -0.57 -23.18 16.44 14.34 0.24 -22.95 16 12 C -0.07 -1.50 5.83 29.10 0.17 -1.33 16 13 C -0.03 -1.06 4.37 -19.88 -0.09 -1.15 16 14 C -0.18 -5.64 9.70 22.30 0.22 -5.42 16 15 C -0.08 -2.74 10.04 22.25 0.22 -2.52 16 16 C -0.24 -11.30 9.17 22.39 0.21 -11.09 16 17 C 0.11 5.72 6.65 22.58 0.15 5.87 16 18 O -0.23 -14.83 9.76 -22.69 -0.22 -15.05 16 19 C -0.41 -25.17 9.49 67.92 0.64 -24.52 16 20 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 21 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 22 N -0.92 -58.21 13.67 21.61 0.30 -57.92 16 23 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.19 -8.44 9.65 22.39 0.22 -8.22 16 28 N -0.50 -10.15 10.19 -172.08 -1.75 -11.90 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.13 3.27 7.00 -2.91 -0.02 3.25 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.43 3.92 8.54 -92.71 -0.79 3.12 16 38 H 0.13 2.13 8.09 -2.39 -0.02 2.11 16 39 H 0.16 1.70 8.08 -2.38 -0.02 1.68 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 42 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -91.96 386.85 4.87 -87.09 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.25 Total: 25.74 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 5.34 Total: -34.36 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.57 Total: -82.35 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.19 Total: -42.36 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -91.96 4.87 -87.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630758111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.977 kcal (2) G-P(sol) polarization free energy of solvation -91.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds