Wall clock time and date at job start Wed Apr 1 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38136 * 120.03633 * 2 1 4 4 C 1.38264 * 120.06689 * 180.02562 * 3 2 1 5 5 C 1.38301 * 120.13624 * 0.02562 * 4 3 2 6 6 C 1.38097 * 120.06433 * 359.67839 * 5 4 3 7 7 C 1.38824 * 120.03198 * 180.02562 * 2 1 3 8 8 N 1.40154 * 120.06626 * 359.97438 * 7 2 1 9 9 C 1.34502 * 125.75987 * 172.58533 * 8 7 2 10 10 C 1.38149 * 107.37079 * 180.02562 * 9 8 7 11 11 C 1.47270 * 126.42006 * 179.97438 * 10 9 8 12 12 O 1.21525 * 120.00121 * 5.15127 * 11 10 9 13 13 O 1.34764 * 119.99825 * 185.14517 * 11 10 9 14 14 C 1.45201 * 117.00008 * 174.99704 * 13 11 10 15 15 C 1.52996 * 109.47091 * 184.83254 * 14 13 11 16 16 C 1.50700 * 112.99950 * 52.65319 * 15 14 13 17 17 H 1.08002 * 119.99735 * 265.53543 * 16 15 14 18 18 C 1.37868 * 120.00280 * 85.53547 * 16 15 14 19 19 N 1.31513 * 120.00722 * 174.23953 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 354.23163 * 18 16 15 21 21 H 1.48505 * 109.46794 * 95.20675 * 20 18 16 22 22 H 1.48500 * 109.47392 * 215.20517 * 20 18 16 23 23 H 1.48496 * 109.47201 * 335.20846 * 20 18 16 24 24 C 1.54037 * 113.81811 * 280.66806 * 15 14 13 25 25 O 1.44178 * 85.51755 * 223.19499 * 24 15 14 26 26 C 1.44180 * 93.33757 * 24.19110 * 25 24 15 27 27 C 1.41378 * 107.15358 * 359.97438 * 10 9 8 28 28 N 1.30454 * 108.06065 * 359.97438 * 27 10 9 29 29 H 1.09000 * 109.47013 * 262.91545 * 1 2 3 30 30 H 1.08997 * 109.46655 * 22.91105 * 1 2 3 31 31 H 1.09001 * 109.47204 * 142.91161 * 1 2 3 32 32 H 1.08000 * 119.96614 * 0.04296 * 3 2 1 33 33 H 1.08001 * 119.93228 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.96650 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.03138 * 180.29821 * 6 5 4 36 36 H 1.08003 * 126.31728 * 359.74567 * 9 8 7 37 37 H 1.08994 * 109.47089 * 304.83834 * 14 13 11 38 38 H 1.09001 * 109.46732 * 64.83789 * 14 13 11 39 39 H 0.96996 * 120.00911 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.86663 * 337.34205 * 24 15 14 41 41 H 1.09002 * 113.86820 * 109.04942 * 24 15 14 42 42 H 1.09005 * 113.86062 * 221.65805 * 26 25 24 43 43 H 1.09005 * 113.86379 * 89.95912 * 26 25 24 44 44 H 1.08003 * 125.97155 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2761 0.0009 -0.0016 6 6 3.5905 -1.1978 0.0046 7 6 2.2018 -1.2019 -0.0005 8 7 1.5031 -2.4168 -0.0005 9 6 2.0495 -3.6377 -0.1419 10 6 1.0213 -4.5587 -0.0860 11 6 1.1507 -6.0215 -0.1967 12 8 2.2522 -6.5310 -0.2594 13 8 0.0477 -6.7951 -0.2282 14 6 0.2454 -8.2163 -0.4505 15 6 -1.1141 -8.9071 -0.5742 16 6 -2.0116 -8.2617 -1.5984 17 1 -2.7309 -7.5163 -1.2929 18 6 -1.9143 -8.6226 -2.9255 19 7 -2.7711 -8.1451 -3.8015 20 14 -0.5652 -9.7899 -3.4794 21 1 -1.0937 -11.1773 -3.5122 22 1 -0.1032 -9.4040 -4.8369 23 1 0.5738 -9.7164 -2.5295 24 6 -1.8012 -9.1748 0.7782 25 8 -2.1210 -10.4698 0.2311 26 6 -1.0238 -10.4393 -0.7038 27 6 -0.1785 -3.8336 0.0973 28 7 0.1196 -2.5646 0.1474 29 1 -0.3633 -0.1267 1.0198 30 1 -0.3632 0.9466 -0.4001 31 1 -0.3634 -0.8198 -0.6197 32 1 1.6585 2.1312 0.0007 33 1 4.1195 2.1328 -0.0010 34 1 5.3561 0.0047 -0.0024 35 1 4.1337 -2.1313 0.0086 36 1 3.0980 -3.8573 -0.2788 37 1 0.8134 -8.3648 -1.3689 38 1 0.7944 -8.6424 0.3892 39 1 -2.7025 -8.3987 -4.7352 40 1 -1.1132 -9.2106 1.6229 41 1 -2.6726 -8.5464 0.9622 42 1 -1.2786 -10.8138 -1.6952 43 1 -0.0984 -10.8613 -0.3116 44 1 -1.1687 -4.2565 0.1819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649238489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:13 Heat of formation + Delta-G solvation = 14.522065 kcal Electronic energy + Delta-G solvation = -28985.233709 eV Core-core repulsion = 24871.232427 eV Total energy + Delta-G solvation = -4114.001283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.93286 -41.58306 -40.76186 -40.03046 -37.30361 -34.89328 -34.76052 -33.92200 -32.55352 -31.54587 -30.50339 -27.92025 -27.68838 -27.31635 -26.34135 -25.04354 -23.63976 -22.92482 -21.80458 -21.16520 -20.84416 -19.48349 -18.56241 -18.00363 -17.85071 -17.53359 -17.19821 -16.74908 -16.58878 -16.44302 -16.31819 -16.11351 -15.64758 -15.42475 -14.94377 -14.88369 -14.59130 -14.25606 -14.22476 -14.03755 -13.97895 -13.74750 -13.49901 -13.14928 -12.86116 -12.57168 -12.34050 -12.22824 -12.15771 -12.09546 -11.95466 -11.70414 -11.50371 -11.34256 -11.24035 -10.99902 -10.65688 -10.39324 -10.35268 -9.83430 -9.20769 -8.32807 -6.35766 -0.41161 0.28531 0.57605 1.03384 1.07075 1.24028 1.29838 1.37583 1.82273 2.13043 2.25916 2.70722 2.80457 3.15850 3.26794 3.50911 3.61056 3.76324 3.82150 3.91178 4.05341 4.12248 4.14920 4.28978 4.31135 4.35562 4.39418 4.45849 4.46464 4.55643 4.59649 4.66269 4.71791 4.80983 4.92561 4.97129 5.06987 5.26110 5.28937 5.35078 5.41639 5.45281 5.48691 5.56143 5.60735 5.65719 6.03250 6.24419 6.29381 6.66866 6.85384 7.26349 8.83316 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002520 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.995443 B =11107.731018 C =11230.193474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.136 4.136 7 C 0.108 3.892 8 N -0.302 5.302 9 C 0.141 3.859 10 C -0.286 4.286 11 C 0.538 3.462 12 O -0.550 6.550 13 O -0.334 6.334 14 C 0.076 3.924 15 C -0.019 4.019 16 C -0.481 4.481 17 H 0.046 0.954 18 C 0.019 3.981 19 N -0.939 5.939 20 Si 0.919 3.081 21 H -0.264 1.264 22 H -0.298 1.298 23 H -0.226 1.226 24 C 0.049 3.951 25 O -0.391 6.391 26 C 0.026 3.974 27 C 0.105 3.895 28 N -0.299 5.299 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.219 0.781 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.156 17.945 9.699 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.156 4.156 7 C 0.018 3.982 8 N -0.073 5.073 9 C -0.008 4.008 10 C -0.298 4.298 11 C 0.385 3.615 12 O -0.444 6.444 13 O -0.248 6.248 14 C 0.002 3.998 15 C -0.020 4.020 16 C -0.519 4.519 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.579 5.579 20 Si 0.745 3.255 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.149 1.149 24 C -0.027 4.027 25 O -0.310 6.310 26 C -0.051 4.051 27 C -0.082 4.082 28 N -0.117 5.117 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.236 0.764 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 15.725 18.829 9.707 26.383 hybrid contribution 0.324 -1.581 -1.024 1.911 sum 16.049 17.248 8.683 25.109 Atomic orbital electron populations 1.20975 0.89914 1.03072 1.02861 1.19981 0.97436 0.91560 1.00529 1.21323 0.95051 0.96923 0.99113 1.21698 0.93861 0.99747 0.97773 1.21386 1.01749 0.90654 0.98077 1.21208 0.90134 1.01565 1.02726 1.17934 0.91429 0.82003 1.06869 1.45836 1.05563 1.04668 1.51235 1.23272 1.00620 0.82929 0.94023 1.19400 0.94900 0.90517 1.24971 1.20286 0.82193 0.87295 0.71762 1.90751 1.28124 1.75931 1.49548 1.86611 1.34951 1.21851 1.81432 1.23670 0.99126 0.76363 1.00679 1.21610 0.92346 0.91920 0.96142 1.20474 1.18372 1.22081 0.90988 0.93611 1.25753 0.97547 0.97832 0.96776 1.70007 1.37518 1.46949 1.03380 0.86411 0.81439 0.79480 0.78133 1.19028 1.22559 1.14892 1.24118 0.99790 0.83278 0.95495 1.89549 1.48202 1.38871 1.54408 1.24374 0.90938 0.96040 0.93710 1.24706 1.00149 0.89628 0.93723 1.77497 0.90003 1.18239 1.25921 0.91381 0.90440 0.91065 0.82933 0.82183 0.81905 0.83564 0.76428 0.92665 0.90263 0.92505 0.88215 0.90019 0.91455 0.87690 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.65 71.24 0.62 -1.66 16 2 C -0.09 -1.82 5.90 -19.75 -0.12 -1.94 16 3 C -0.11 -1.40 9.67 22.25 0.22 -1.18 16 4 C -0.11 -1.09 10.04 22.29 0.22 -0.87 16 5 C -0.10 -1.04 10.04 22.25 0.22 -0.82 16 6 C -0.14 -2.08 9.45 22.39 0.21 -1.86 16 7 C 0.11 2.31 6.65 38.10 0.25 2.56 16 8 N -0.30 -7.80 3.75 -186.17 -0.70 -8.49 16 9 C 0.14 3.62 10.59 84.26 0.89 4.51 16 10 C -0.29 -9.07 6.12 -20.15 -0.12 -9.19 16 11 C 0.54 20.16 7.94 70.20 0.56 20.71 16 12 O -0.55 -21.75 16.68 19.75 0.33 -21.42 16 13 O -0.33 -13.68 9.65 -56.75 -0.55 -14.23 16 14 C 0.08 3.06 4.62 71.98 0.33 3.39 16 15 C -0.02 -0.84 0.52 -52.23 -0.03 -0.87 16 16 C -0.48 -26.56 8.59 25.60 0.22 -26.34 16 17 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 18 C 0.02 1.07 5.43 84.65 0.46 1.53 16 19 N -0.94 -58.09 13.96 21.44 0.30 -57.79 16 20 Si 0.92 42.73 23.69 68.60 1.62 44.36 16 21 H -0.26 -11.73 6.78 99.48 0.67 -11.06 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 23 H -0.23 -9.26 4.84 99.48 0.48 -8.78 16 24 C 0.05 1.92 8.35 72.27 0.60 2.52 16 25 O -0.39 -16.99 12.40 -148.98 -1.85 -18.84 16 26 C 0.03 1.05 6.52 72.27 0.47 1.53 16 27 C 0.11 3.20 11.87 85.67 1.02 4.21 16 28 N -0.30 -8.63 8.60 -56.21 -0.48 -9.12 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 31 H 0.07 1.82 5.81 -2.39 -0.01 1.80 16 32 H 0.15 1.29 8.05 -2.91 -0.02 1.27 16 33 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.15 1.70 6.77 -2.91 -0.02 1.68 16 36 H 0.22 4.11 7.08 -2.91 -0.02 4.09 16 37 H 0.06 2.36 5.65 -2.39 -0.01 2.35 16 38 H 0.08 2.73 8.03 -2.39 -0.02 2.71 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.10 3.08 8.02 -2.39 -0.02 3.06 16 41 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 42 H 0.07 2.98 3.83 -2.38 -0.01 2.97 16 43 H 0.11 3.42 8.10 -2.38 -0.02 3.40 16 44 H 0.21 5.95 8.06 -2.91 -0.02 5.93 16 Total: -1.00 -74.22 364.58 5.49 -68.73 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.78 Total: 20.57 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.03 Total: -3.77 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -0.88 Total: -75.40 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.07 Total: -54.48 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.62 Total: 44.36 kcal Total: -74.22 5.49 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649238489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.249 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds