Wall clock time and date at job start Wed Apr 1 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.52663 * 2 1 4 4 O 1.21278 * 119.99974 * 239.87587 * 3 2 1 5 5 N 1.34774 * 119.99551 * 59.87536 * 3 2 1 6 6 C 1.46508 * 119.99389 * 180.02562 * 5 3 2 7 7 C 1.53945 * 113.73884 * 253.73891 * 6 5 3 8 8 N 1.47820 * 86.03422 * 222.08706 * 7 6 5 9 9 C 1.34775 * 134.45331 * 204.64671 * 8 7 6 10 10 O 1.21282 * 119.99783 * 179.86906 * 9 8 7 11 11 C 1.50695 * 120.00097 * 359.86298 * 9 8 7 12 12 S 1.80998 * 109.47100 * 179.97438 * 11 9 8 13 13 C 1.76200 * 100.00219 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00346 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00423 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47210 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47470 * 119.99922 * 17 15 13 20 20 H 1.48498 * 109.47243 * 240.00181 * 17 15 13 21 21 C 1.47579 * 91.04817 * 24.55176 * 8 7 6 22 22 C 1.53181 * 109.52128 * 239.86938 * 2 1 3 23 23 C 1.53173 * 109.03676 * 183.05172 * 22 2 1 24 24 C 1.53096 * 109.16177 * 56.98730 * 23 22 2 25 25 O 1.42908 * 109.41214 * 302.38665 * 24 23 22 26 26 C 1.42899 * 114.09482 * 61.16277 * 25 24 23 27 27 H 1.09000 * 109.47265 * 180.12528 * 1 2 3 28 28 H 1.09002 * 109.47083 * 300.12903 * 1 2 3 29 29 H 1.08995 * 109.47117 * 60.12215 * 1 2 3 30 30 H 0.96999 * 120.00535 * 0.02562 * 5 3 2 31 31 H 1.08996 * 112.94499 * 25.32799 * 6 5 3 32 32 H 1.09000 * 113.76972 * 336.34973 * 7 6 5 33 33 H 1.08995 * 113.77311 * 107.74981 * 7 6 5 34 34 H 1.09000 * 109.47781 * 300.00127 * 11 9 8 35 35 H 1.09004 * 109.47389 * 60.00485 * 11 9 8 36 36 H 0.97004 * 120.00002 * 179.97438 * 16 15 13 37 37 H 1.09008 * 113.76279 * 221.15265 * 21 8 7 38 38 H 1.09000 * 113.87599 * 89.77247 * 21 8 7 39 39 H 1.08999 * 109.53619 * 63.19174 * 22 2 1 40 40 H 1.09000 * 109.54500 * 302.92366 * 22 2 1 41 41 H 1.08998 * 109.52657 * 297.07777 * 23 22 2 42 42 H 1.09003 * 109.57546 * 176.91826 * 23 22 2 43 43 H 1.08993 * 109.48033 * 62.37417 * 24 23 22 44 44 H 1.09001 * 109.48095 * 182.40698 * 24 23 22 45 45 H 1.08996 * 109.47929 * 178.85800 * 26 25 24 46 46 H 1.09003 * 109.49364 * 58.82657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7332 1.8156 -0.9084 5 7 1.7068 2.2512 1.0096 6 6 2.1960 3.6321 1.0093 7 6 3.3195 3.8918 2.0292 8 7 2.6186 5.1594 2.3243 9 6 2.9969 6.3535 2.8217 10 8 2.1806 7.2402 2.9567 11 6 4.4341 6.5868 3.2102 12 16 4.6230 8.2738 3.8382 13 6 6.3461 8.2719 4.2067 14 1 6.9363 7.3861 4.0242 15 6 6.9450 9.4092 4.7306 16 7 6.2257 10.4890 4.9525 17 14 8.7718 9.4075 5.1206 18 1 9.3488 8.0814 4.7832 19 1 9.4495 10.4603 4.3222 20 1 8.9694 9.6791 6.5671 21 6 1.3396 4.5932 1.8535 22 6 2.0419 -0.7247 -1.2487 23 6 3.5716 -0.7852 -1.1994 24 6 4.0056 -1.4797 0.0942 25 8 3.4707 -0.7729 1.2152 26 6 2.0429 -0.7248 1.2472 27 1 -0.3634 -1.0276 0.0022 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5119 -0.8910 30 1 1.1476 1.9349 1.7364 31 1 2.4168 4.0045 0.0089 32 1 3.3271 3.1896 2.8628 33 1 4.3017 4.0267 1.5761 34 1 4.7211 5.8760 3.9851 35 1 5.0731 6.4507 2.3376 36 1 6.6441 11.2837 5.3190 37 1 0.7439 5.2871 1.2604 38 1 0.7628 4.0972 2.6342 39 1 1.7270 -0.1819 -2.1399 40 1 1.6375 -1.7366 -1.2745 41 1 3.9772 0.2262 -1.2236 42 1 3.9427 -1.3471 -2.0565 43 1 3.6337 -2.5042 0.0991 44 1 5.0939 -1.4875 0.1550 45 1 1.7172 -0.1888 2.1387 46 1 1.6451 -1.7394 1.2674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688637489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:23 Heat of formation + Delta-G solvation = -85.680635 kcal Electronic energy + Delta-G solvation = -27615.989875 eV Core-core repulsion = 23633.087429 eV Total energy + Delta-G solvation = -3982.902446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33748 -40.12407 -38.50355 -37.39574 -34.96729 -34.25612 -32.42146 -32.35136 -30.24000 -27.71705 -27.49929 -26.29274 -25.56205 -25.43852 -24.09299 -22.35534 -21.31098 -20.08208 -18.99733 -17.74566 -17.42861 -17.10777 -16.64079 -16.47079 -16.07915 -15.65977 -15.35851 -15.07987 -14.79610 -14.78254 -14.56029 -14.28695 -13.94955 -13.47219 -13.19297 -13.07886 -12.91664 -12.81415 -12.74288 -12.62060 -12.53374 -12.45147 -12.35808 -11.79075 -11.56567 -11.38194 -11.08399 -11.05905 -11.00405 -10.93623 -10.74848 -10.12778 -9.80881 -9.75353 -9.51733 -9.31166 -9.06587 -8.65785 -8.23352 -6.49984 -6.20986 -3.91710 2.26994 2.47903 2.86732 3.11205 3.22789 3.26450 3.32133 3.44517 3.55960 3.96484 4.10021 4.10608 4.20961 4.29016 4.46797 4.54313 4.63592 4.72065 4.85119 4.88810 4.91513 4.97017 5.05808 5.09448 5.14346 5.16386 5.20076 5.29579 5.38488 5.39772 5.45767 5.49332 5.56107 5.58584 5.67227 5.71890 5.89688 5.96223 6.05113 6.15986 6.18287 6.71066 7.10108 7.61108 7.75723 7.88492 8.36609 8.50736 9.24494 10.86544 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002134 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.262589 B =13115.018696 C =14171.044130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.537 3.463 4 O -0.528 6.528 5 N -0.717 5.717 6 C 0.113 3.887 7 C 0.092 3.908 8 N -0.649 5.649 9 C 0.560 3.440 10 O -0.513 6.513 11 C -0.145 4.145 12 S -0.061 6.061 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.103 3.897 22 C -0.095 4.095 23 C -0.168 4.168 24 C 0.059 3.941 25 O -0.376 6.376 26 C 0.073 3.927 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.401 0.599 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 -29.260 -10.746 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C 0.323 3.677 4 O -0.403 6.403 5 N -0.369 5.369 6 C 0.007 3.993 7 C -0.032 4.032 8 N -0.389 5.389 9 C 0.350 3.650 10 O -0.387 6.387 11 C -0.296 4.296 12 S 0.166 5.834 13 C -0.682 4.682 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.021 4.021 22 C -0.133 4.133 23 C -0.206 4.206 24 C -0.018 4.018 25 O -0.294 6.294 26 C -0.004 4.004 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.608 -27.149 -10.917 31.862 hybrid contribution 1.669 -1.336 0.338 2.164 sum -10.940 -28.485 -10.580 32.295 Atomic orbital electron populations 1.21798 0.91560 1.03316 1.03129 1.21562 0.97816 0.93398 0.99433 1.20239 0.79409 0.86723 0.81342 1.90663 1.36909 1.76781 1.35954 1.45877 1.53780 1.11669 1.25596 1.23126 0.94581 0.80800 1.00759 1.23689 0.98374 0.84276 0.96908 1.49791 1.11207 1.11533 1.66335 1.20024 0.90413 0.79576 0.75012 1.90718 1.53987 1.41782 1.52168 1.23477 0.94080 1.07607 1.04387 1.85386 1.12023 1.04636 1.81399 1.22895 0.93795 1.02033 1.49440 0.90846 1.25002 0.99194 0.94565 0.94882 1.70033 1.35992 1.02562 1.41723 0.86100 0.82891 0.78280 0.78133 1.19588 1.20545 1.20565 1.23360 0.89136 0.93860 0.95782 1.21433 0.96036 0.99587 0.96250 1.22398 0.96061 1.04206 0.97890 1.22660 0.99311 0.94173 0.85631 1.88002 1.19254 1.76514 1.45610 1.22624 0.82107 0.99816 0.95900 0.91066 0.91685 0.91394 0.76418 0.85483 0.89435 0.89301 0.89259 0.89189 0.92235 0.89299 0.89798 0.90588 0.91279 0.88459 0.90924 0.93320 0.88740 0.88571 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 8.39 37.16 0.31 -0.19 16 2 C -0.12 -0.70 0.63 -155.52 -0.10 -0.80 16 3 C 0.54 4.75 5.91 -10.99 -0.06 4.68 16 4 O -0.53 -6.68 13.46 5.56 0.07 -6.60 16 5 N -0.72 -5.12 5.15 -55.34 -0.28 -5.41 16 6 C 0.11 1.06 4.40 -70.14 -0.31 0.75 16 7 C 0.09 1.00 8.43 -2.83 -0.02 0.98 16 8 N -0.65 -9.34 3.61 -178.33 -0.64 -9.98 16 9 C 0.56 11.08 8.07 -10.99 -0.09 10.99 16 10 O -0.51 -12.13 16.59 5.56 0.09 -12.04 16 11 C -0.15 -3.07 5.91 36.00 0.21 -2.86 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 17 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 C 0.10 1.06 8.59 -2.97 -0.03 1.03 16 22 C -0.10 -0.61 4.45 -26.55 -0.12 -0.73 16 23 C -0.17 -1.27 5.81 -26.59 -0.15 -1.42 16 24 C 0.06 0.41 6.84 37.21 0.25 0.66 16 25 O -0.38 -3.23 10.45 -35.23 -0.37 -3.60 16 26 C 0.07 0.40 5.47 37.21 0.20 0.61 16 27 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.15 7.56 -51.93 -0.39 -0.24 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.40 1.76 7.54 -40.82 -0.31 1.45 16 31 H 0.13 1.40 7.51 -51.93 -0.39 1.01 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 35 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 1.04 5.81 -51.93 -0.30 0.73 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.40 7.52 -51.93 -0.39 0.00 16 46 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -37.58 387.71 -8.73 -46.31 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.24 Total: -2.16 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.30 Total: 0.57 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.20 Total: -41.09 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.20 Total: -22.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.58 -8.73 -46.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688637489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.371 kcal (2) G-P(sol) polarization free energy of solvation -37.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds