Wall clock time and date at job start Wed Apr 1 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.52663 * 2 1 4 4 O 1.21278 * 119.99974 * 239.87587 * 3 2 1 5 5 N 1.34774 * 119.99551 * 59.87536 * 3 2 1 6 6 C 1.46508 * 119.99389 * 180.02562 * 5 3 2 7 7 C 1.53945 * 113.73884 * 253.73891 * 6 5 3 8 8 N 1.47820 * 86.03422 * 222.08706 * 7 6 5 9 9 C 1.34775 * 134.45331 * 204.64671 * 8 7 6 10 10 O 1.21282 * 119.99783 * 179.86906 * 9 8 7 11 11 C 1.50695 * 120.00097 * 359.86298 * 9 8 7 12 12 S 1.80998 * 109.47100 * 179.97438 * 11 9 8 13 13 C 1.76200 * 100.00219 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00346 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00423 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47210 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47470 * 119.99922 * 17 15 13 20 20 H 1.48498 * 109.47243 * 240.00181 * 17 15 13 21 21 C 1.47579 * 91.04817 * 24.55176 * 8 7 6 22 22 C 1.53181 * 109.52128 * 239.86938 * 2 1 3 23 23 C 1.53173 * 109.03676 * 183.05172 * 22 2 1 24 24 C 1.53096 * 109.16177 * 56.98730 * 23 22 2 25 25 O 1.42908 * 109.41214 * 302.38665 * 24 23 22 26 26 C 1.42899 * 114.09482 * 61.16277 * 25 24 23 27 27 H 1.09000 * 109.47265 * 180.12528 * 1 2 3 28 28 H 1.09002 * 109.47083 * 300.12903 * 1 2 3 29 29 H 1.08995 * 109.47117 * 60.12215 * 1 2 3 30 30 H 0.96999 * 120.00535 * 0.02562 * 5 3 2 31 31 H 1.08996 * 112.94499 * 25.32799 * 6 5 3 32 32 H 1.09000 * 113.76972 * 336.34973 * 7 6 5 33 33 H 1.08995 * 113.77311 * 107.74981 * 7 6 5 34 34 H 1.09000 * 109.47781 * 300.00127 * 11 9 8 35 35 H 1.09004 * 109.47389 * 60.00485 * 11 9 8 36 36 H 0.97004 * 120.00002 * 179.97438 * 16 15 13 37 37 H 1.09008 * 113.76279 * 221.15265 * 21 8 7 38 38 H 1.09000 * 113.87599 * 89.77247 * 21 8 7 39 39 H 1.08999 * 109.53619 * 63.19174 * 22 2 1 40 40 H 1.09000 * 109.54500 * 302.92366 * 22 2 1 41 41 H 1.08998 * 109.52657 * 297.07777 * 23 22 2 42 42 H 1.09003 * 109.57546 * 176.91826 * 23 22 2 43 43 H 1.08993 * 109.48033 * 62.37417 * 24 23 22 44 44 H 1.09001 * 109.48095 * 182.40698 * 24 23 22 45 45 H 1.08996 * 109.47929 * 178.85800 * 26 25 24 46 46 H 1.09003 * 109.49364 * 58.82657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7332 1.8156 -0.9084 5 7 1.7068 2.2512 1.0096 6 6 2.1960 3.6321 1.0093 7 6 3.3195 3.8918 2.0292 8 7 2.6186 5.1594 2.3243 9 6 2.9969 6.3535 2.8217 10 8 2.1806 7.2402 2.9567 11 6 4.4341 6.5868 3.2102 12 16 4.6230 8.2738 3.8382 13 6 6.3461 8.2719 4.2067 14 1 6.9363 7.3861 4.0242 15 6 6.9450 9.4092 4.7306 16 7 6.2257 10.4890 4.9525 17 14 8.7718 9.4075 5.1206 18 1 9.3488 8.0814 4.7832 19 1 9.4495 10.4603 4.3222 20 1 8.9694 9.6791 6.5671 21 6 1.3396 4.5932 1.8535 22 6 2.0419 -0.7247 -1.2487 23 6 3.5716 -0.7852 -1.1994 24 6 4.0056 -1.4797 0.0942 25 8 3.4707 -0.7729 1.2152 26 6 2.0429 -0.7248 1.2472 27 1 -0.3634 -1.0276 0.0022 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5119 -0.8910 30 1 1.1476 1.9349 1.7364 31 1 2.4168 4.0045 0.0089 32 1 3.3271 3.1896 2.8628 33 1 4.3017 4.0267 1.5761 34 1 4.7211 5.8760 3.9851 35 1 5.0731 6.4507 2.3376 36 1 6.6441 11.2837 5.3190 37 1 0.7439 5.2871 1.2604 38 1 0.7628 4.0972 2.6342 39 1 1.7270 -0.1819 -2.1399 40 1 1.6375 -1.7366 -1.2745 41 1 3.9772 0.2262 -1.2236 42 1 3.9427 -1.3471 -2.0565 43 1 3.6337 -2.5042 0.0991 44 1 5.0939 -1.4875 0.1550 45 1 1.7172 -0.1888 2.1387 46 1 1.6451 -1.7394 1.2674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688637489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:22 Heat of formation + Delta-G solvation = -113.821027 kcal Electronic energy + Delta-G solvation = -27617.210134 eV Core-core repulsion = 23633.087429 eV Total energy + Delta-G solvation = -3984.122705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02794 -41.14632 -39.40819 -38.56742 -35.53044 -35.01978 -34.61335 -32.94782 -31.71110 -28.96870 -27.85130 -27.69803 -27.19329 -26.02020 -24.77552 -23.02709 -22.11738 -20.88575 -20.23815 -19.54004 -18.21136 -17.99405 -17.84411 -17.02099 -16.95950 -16.87883 -16.69228 -16.20621 -16.12256 -15.78761 -15.42959 -15.33022 -15.04811 -14.71769 -14.22945 -14.16703 -13.82576 -13.74121 -13.57697 -13.42695 -13.19309 -13.18668 -13.11293 -12.95228 -12.92635 -12.85244 -12.61806 -12.42436 -11.95016 -11.74804 -11.51842 -11.46545 -11.18159 -11.07543 -10.68589 -10.34995 -10.32476 -10.13386 -9.85104 -8.71392 -8.37469 -6.16468 1.14604 1.39265 1.40072 1.47921 1.53846 1.60440 1.79344 2.23942 2.26787 2.96632 2.99495 3.11060 3.30674 3.49264 3.55542 3.64991 3.83584 3.85758 3.96990 4.02787 4.14455 4.22221 4.29278 4.36964 4.41175 4.49860 4.50946 4.57204 4.59187 4.71789 4.73779 4.78675 4.79230 4.87684 4.91307 4.98650 5.06937 5.22117 5.29137 5.38174 5.39281 5.52183 6.17431 6.25007 6.41672 6.54474 7.02474 7.03712 7.25123 8.72167 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002134 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.262589 B =13115.018696 C =14171.044130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.531 3.469 4 O -0.572 6.572 5 N -0.702 5.702 6 C 0.130 3.870 7 C 0.090 3.910 8 N -0.647 5.647 9 C 0.559 3.441 10 O -0.563 6.563 11 C -0.121 4.121 12 S -0.147 6.147 13 C -0.546 4.546 14 H 0.081 0.919 15 C 0.013 3.987 16 N -0.910 5.910 17 Si 1.001 2.999 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.105 3.895 22 C -0.097 4.097 23 C -0.168 4.168 24 C 0.058 3.942 25 O -0.402 6.402 26 C 0.068 3.932 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.418 0.582 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -32.690 -10.245 36.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C 0.319 3.681 4 O -0.450 6.450 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.033 4.033 8 N -0.384 5.384 9 C 0.348 3.652 10 O -0.442 6.442 11 C -0.272 4.272 12 S 0.080 5.920 13 C -0.694 4.694 14 H 0.099 0.901 15 C -0.192 4.192 16 N -0.547 5.547 17 Si 0.822 3.178 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.017 4.017 22 C -0.134 4.134 23 C -0.206 4.206 24 C -0.018 4.018 25 O -0.321 6.321 26 C -0.009 4.009 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.257 0.743 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.912 -30.662 -10.420 34.863 hybrid contribution 1.678 -0.419 0.085 1.731 sum -11.234 -31.081 -10.335 34.627 Atomic orbital electron populations 1.21829 0.89371 1.04823 1.03509 1.21580 0.99372 0.90967 0.99599 1.20906 0.78581 0.87977 0.80674 1.90662 1.38869 1.77773 1.37690 1.45688 1.53507 1.10365 1.25927 1.22657 0.93733 0.81992 0.99330 1.23995 0.98522 0.82694 0.98104 1.49704 1.13981 1.10873 1.63843 1.19640 0.89267 0.80839 0.75456 1.90692 1.54744 1.43885 1.54853 1.23277 0.96072 1.02953 1.04888 1.85527 1.12980 1.11056 1.82420 1.23203 0.93816 1.02656 1.49706 0.90119 1.26150 1.04794 0.93897 0.94318 1.70188 1.38458 1.03430 1.42599 0.84878 0.75848 0.78897 0.78148 1.18185 1.19825 1.19668 1.23664 0.87915 0.93512 0.96599 1.21471 0.95161 1.00834 0.95974 1.22343 0.97065 1.02286 0.98869 1.22703 0.99301 0.94989 0.84819 1.87959 1.21130 1.76966 1.46048 1.22882 0.80705 1.01336 0.95997 0.89046 0.89970 0.92401 0.74324 0.87260 0.86845 0.89782 0.87601 0.88058 0.91888 0.89656 0.86333 0.92214 0.88732 0.92074 0.90117 0.91114 0.89188 0.86914 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 8.39 71.98 0.60 0.09 16 2 C -0.11 -1.05 0.63 -52.83 -0.03 -1.08 16 3 C 0.53 8.65 5.91 87.66 0.52 9.17 16 4 O -0.57 -14.63 13.46 -3.02 -0.04 -14.67 16 5 N -0.70 -8.30 5.15 -447.39 -2.30 -10.61 16 6 C 0.13 2.23 4.40 46.75 0.21 2.43 16 7 C 0.09 1.79 8.43 86.44 0.73 2.52 16 8 N -0.65 -17.83 3.61 -836.50 -3.02 -20.85 16 9 C 0.56 22.21 8.07 87.66 0.71 22.91 16 10 O -0.56 -27.40 16.59 -3.04 -0.05 -27.45 16 11 C -0.12 -5.15 5.91 71.23 0.42 -4.73 16 12 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 13 C -0.55 -31.99 9.50 67.95 0.65 -31.34 16 14 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 15 C 0.01 0.76 5.49 84.86 0.47 1.23 16 16 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 17 Si 1.00 44.43 29.55 68.60 2.03 46.45 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.11 1.96 8.59 86.48 0.74 2.70 16 22 C -0.10 -1.08 4.45 30.71 0.14 -0.94 16 23 C -0.17 -2.44 5.81 30.68 0.18 -2.26 16 24 C 0.06 0.72 6.84 72.01 0.49 1.21 16 25 O -0.40 -6.05 10.45 -148.98 -1.56 -7.60 16 26 C 0.07 0.51 5.47 72.02 0.39 0.91 16 27 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.08 0.03 7.56 -2.39 -0.02 0.02 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.42 2.06 7.54 -92.71 -0.70 1.36 16 31 H 0.11 2.38 7.51 -2.39 -0.02 2.36 16 32 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 35 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.12 1.46 8.11 -2.39 -0.02 1.44 16 39 H 0.06 0.86 8.02 -2.39 -0.02 0.84 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 1.36 5.81 -2.39 -0.01 1.34 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 0.45 7.52 -2.39 -0.02 0.43 16 46 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -86.41 387.71 0.67 -85.74 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.29 Total: 12.14 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.21 Total: 2.81 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -5.04 Total: -87.83 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.65 Total: -49.72 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -86.41 0.67 -85.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688637489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.081 kcal (2) G-P(sol) polarization free energy of solvation -86.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds