Wall clock time and date at job start Wed Apr 1 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00110 * 2 1 4 4 C 1.52999 * 109.47204 * 120.00133 * 3 2 1 5 5 O 1.42894 * 109.47267 * 359.97438 * 3 2 1 6 6 C 1.53005 * 109.47059 * 239.99798 * 3 2 1 7 7 C 1.50704 * 109.47054 * 60.12370 * 6 3 2 8 8 O 1.21284 * 119.99767 * 354.31891 * 7 6 3 9 9 N 1.34772 * 119.99838 * 174.31737 * 7 6 3 10 10 C 1.47582 * 134.49044 * 179.97438 * 9 7 6 11 11 C 1.53945 * 86.11713 * 204.64146 * 10 9 7 12 12 C 1.52996 * 113.74117 * 221.94029 * 11 10 9 13 13 N 1.46503 * 109.47157 * 183.07416 * 12 11 10 14 14 C 1.34779 * 119.99903 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99771 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99788 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.47228 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00198 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00045 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99920 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00314 * 0.02562 * 20 18 17 22 22 Si 1.86812 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46641 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46947 * 119.99911 * 22 20 18 25 25 H 1.48496 * 109.46886 * 240.00358 * 22 20 18 26 26 C 1.47922 * 134.50512 * 0.02562 * 9 7 6 27 27 H 1.08005 * 119.99610 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00727 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99610 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47218 * 184.93681 * 4 3 2 31 31 H 1.08997 * 109.46765 * 304.93130 * 4 3 2 32 32 H 1.08996 * 109.47227 * 64.93352 * 4 3 2 33 33 H 0.96702 * 113.99873 * 300.00058 * 5 3 2 34 34 H 1.08998 * 109.46805 * 300.12662 * 6 3 2 35 35 H 1.08998 * 109.47457 * 180.12586 * 6 3 2 36 36 H 1.09003 * 113.76685 * 90.33794 * 10 9 7 37 37 H 1.09001 * 113.76931 * 318.94419 * 10 9 7 38 38 H 1.09005 * 113.73750 * 90.74064 * 11 10 9 39 39 H 1.09000 * 109.47215 * 303.07650 * 12 11 10 40 40 H 1.09004 * 109.47238 * 63.07334 * 12 11 10 41 41 H 0.97000 * 119.99863 * 0.02562 * 13 12 11 42 42 H 1.09000 * 109.47330 * 300.00226 * 16 14 13 43 43 H 1.09005 * 109.46729 * 60.00250 * 16 14 13 44 44 H 0.96998 * 119.99959 * 180.02562 * 21 20 18 45 45 H 1.08996 * 113.87051 * 41.09332 * 26 9 7 46 46 H 1.08998 * 113.76970 * 269.60350 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 1.2492 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0765 1.3093 -2.4798 8 8 0.8872 1.0973 -2.3715 9 7 2.6230 1.4762 -3.7004 10 6 2.0969 1.4666 -5.0792 11 6 3.5256 1.0886 -5.5101 12 6 4.0042 1.8203 -6.7656 13 7 5.3385 1.3393 -7.1325 14 6 5.9634 1.8453 -8.2142 15 8 5.4214 2.6991 -8.8835 16 6 7.3362 1.3508 -8.5912 17 16 7.9023 2.2164 -10.0766 18 6 9.4823 1.4649 -10.2851 19 1 9.8172 0.7098 -9.5893 20 6 10.2961 1.8427 -11.3441 21 7 9.8877 2.7626 -12.1924 22 14 11.9710 1.0454 -11.5656 23 1 12.1912 0.0489 -10.4870 24 1 12.0252 0.3663 -12.8850 25 1 13.0273 2.0871 -11.5012 26 6 3.9910 1.7416 -4.1964 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 3.4206 2.3649 1.2945 31 1 2.3277 1.2407 2.1370 32 1 3.7078 0.6105 1.2061 33 1 0.5440 2.4030 -0.7659 34 1 3.6500 0.5563 -1.2503 35 1 3.4899 2.3290 -1.2482 36 1 1.7757 2.4460 -5.4336 37 1 1.3609 0.6838 -5.2632 38 1 3.7015 0.0136 -5.5517 39 1 3.3109 1.6284 -7.5845 40 1 4.0457 2.8916 -6.5683 41 1 5.7718 0.6561 -6.5974 42 1 8.0294 1.5436 -7.7724 43 1 7.2951 0.2795 -8.7879 44 1 10.4563 3.0263 -12.9327 45 1 4.7658 1.1783 -3.6764 46 1 4.2258 2.8017 -4.2918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688649583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:39 Heat of formation + Delta-G solvation = -68.579796 kcal Electronic energy + Delta-G solvation = -26405.433585 eV Core-core repulsion = 22423.272686 eV Total energy + Delta-G solvation = -3982.160898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05131 -39.69990 -38.89900 -37.39435 -34.57196 -33.34035 -32.46648 -32.01612 -30.94456 -29.50046 -28.27161 -26.69780 -25.75110 -25.31513 -22.79465 -21.30249 -20.46206 -19.98854 -19.42774 -17.94518 -17.64186 -17.09052 -16.82325 -16.68818 -16.27683 -15.82235 -15.52922 -15.07928 -14.86178 -14.83247 -14.34042 -14.01966 -13.76627 -13.55547 -13.18526 -13.16096 -13.06890 -12.86041 -12.63696 -12.60453 -12.47150 -12.31894 -12.05199 -11.87001 -11.74713 -11.38812 -11.29593 -11.10188 -11.05947 -10.79315 -10.48975 -10.33326 -9.84681 -9.50701 -9.47833 -9.13922 -9.11879 -9.00000 -8.27781 -6.54407 -6.25571 -3.96434 2.05340 2.16059 2.30772 2.93823 3.01637 3.18731 3.24456 3.28705 3.56156 3.82803 3.88165 3.91430 4.16551 4.27898 4.35046 4.38955 4.52745 4.73723 4.77436 4.88135 4.92887 4.98252 5.02553 5.09279 5.09769 5.09899 5.14976 5.27399 5.34915 5.38416 5.44052 5.51181 5.63171 5.68792 5.73196 5.80334 5.83522 6.08052 6.32964 6.48676 6.52035 7.14621 7.35405 7.55931 7.59613 7.69115 8.31503 8.52323 9.20034 10.81881 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.001567 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.117817 B =17866.045479 C =18470.351793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.192 4.192 3 C 0.177 3.823 4 C -0.135 4.135 5 O -0.560 6.560 6 C -0.162 4.162 7 C 0.538 3.462 8 O -0.538 6.538 9 N -0.646 5.646 10 C 0.117 3.883 11 C -0.134 4.134 12 C 0.130 3.870 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.104 3.896 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.384 0.616 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.086 0.914 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.628 -5.978 24.873 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.192 4.192 5 O -0.370 6.370 6 C -0.202 4.202 7 C 0.329 3.671 8 O -0.416 6.416 9 N -0.382 5.382 10 C -0.005 4.005 11 C -0.154 4.154 12 C 0.006 3.994 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.019 4.019 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.236 0.764 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.936 -4.430 24.408 29.485 hybrid contribution 1.758 -2.040 0.214 2.701 sum -14.178 -6.470 24.622 29.140 Atomic orbital electron populations 1.23640 0.95974 1.01732 0.97251 1.23223 0.96826 0.97707 1.03247 1.19827 0.88108 0.85359 0.93124 1.21712 0.98719 1.02743 0.96045 1.86455 1.50924 1.48748 1.50903 1.22410 0.99716 1.05318 0.92780 1.20347 0.88233 0.75563 0.83003 1.90683 1.15836 1.49439 1.85600 1.50113 1.11748 1.71120 1.05192 1.23130 0.96120 1.02544 0.78732 1.23415 0.96314 1.01718 0.93911 1.21208 0.84674 0.98361 0.95203 1.45974 1.18521 1.44400 1.30560 1.20324 0.87100 0.81382 0.79389 1.90715 1.66645 1.30710 1.50931 1.23531 0.95360 1.05063 1.06486 1.85418 1.19693 1.52290 1.26017 1.22904 1.02605 1.26953 1.15945 0.90858 1.24996 0.98772 0.95003 0.94810 1.70023 1.37170 1.28731 1.14308 0.86116 0.82117 0.79026 0.78231 1.19626 1.20557 1.20550 1.23499 0.84954 1.01526 0.91904 0.88098 0.88830 0.87357 0.91484 0.91380 0.90940 0.76376 0.87852 0.88083 0.89041 0.89525 0.87190 0.90785 0.90976 0.76777 0.89188 0.89202 0.92202 0.89548 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 12.60 29.01 0.37 -0.94 16 2 C -0.19 -1.55 7.47 -36.03 -0.27 -1.82 16 3 C 0.18 1.36 1.08 -91.77 -0.10 1.26 16 4 C -0.14 -0.80 8.83 37.16 0.33 -0.48 16 5 O -0.56 -5.47 11.92 -51.77 -0.62 -6.08 16 6 C -0.16 -1.03 4.72 -27.88 -0.13 -1.17 16 7 C 0.54 4.67 7.54 -10.99 -0.08 4.59 16 8 O -0.54 -6.10 12.69 -10.98 -0.14 -6.24 16 9 N -0.65 -4.66 3.62 -178.08 -0.64 -5.30 16 10 C 0.12 0.77 8.40 -2.97 -0.02 0.74 16 11 C -0.13 -0.76 3.93 -89.72 -0.35 -1.11 16 12 C 0.13 1.14 5.51 -4.04 -0.02 1.11 16 13 N -0.74 -8.02 5.56 -60.29 -0.33 -8.35 16 14 C 0.53 9.00 7.85 -10.98 -0.09 8.92 16 15 O -0.52 -10.99 15.86 5.56 0.09 -10.90 16 16 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 22 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.10 0.53 8.19 -2.80 -0.02 0.51 16 27 H 0.10 0.93 6.41 -52.48 -0.34 0.60 16 28 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 29 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.38 3.76 5.78 45.56 0.26 4.02 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 41 H 0.40 3.10 8.47 -40.82 -0.35 2.75 16 42 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 43 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.47 7.92 -51.93 -0.41 0.06 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -36.15 397.94 -8.83 -44.98 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.70 Total: 2.41 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 0.02 Total: -3.67 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.25 Total: -38.62 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.67 Total: -23.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.15 -8.83 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.597 kcal (2) G-P(sol) polarization free energy of solvation -36.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds