Wall clock time and date at job start Wed Apr 1 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50691 * 120.00384 * 2 1 4 4 C 1.53000 * 109.47387 * 359.97438 * 3 2 1 5 5 C 1.53009 * 109.47016 * 240.00092 * 3 2 1 6 6 C 1.50696 * 109.47484 * 120.00496 * 3 2 1 7 7 O 1.21283 * 119.99531 * 359.97438 * 6 3 2 8 8 N 1.34779 * 120.00485 * 180.02562 * 6 3 2 9 9 C 1.46490 * 120.00270 * 179.97438 * 8 6 3 10 10 H 1.08998 * 110.91895 * 31.09626 * 9 8 6 11 11 C 1.55393 * 111.18917 * 267.03805 * 9 8 6 12 12 N 1.47433 * 104.87396 * 204.98082 * 11 9 8 13 13 C 1.34770 * 125.64428 * 204.16622 * 12 11 9 14 14 O 1.21280 * 120.00302 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46850 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99941 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99859 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47100 * 59.99879 * 21 19 17 23 23 H 1.48505 * 109.46884 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47239 * 299.99781 * 21 19 17 25 25 C 1.47023 * 108.70199 * 24.13006 * 12 11 9 26 26 C 1.54323 * 107.27326 * 358.93985 * 25 12 11 27 27 H 1.08993 * 110.72097 * 219.26788 * 26 25 12 28 28 O 1.42905 * 110.71749 * 96.16908 * 26 25 12 29 29 H 1.08007 * 119.99573 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00432 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.99573 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47388 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47292 * 300.00505 * 4 3 2 34 34 H 1.09002 * 109.46582 * 60.00178 * 4 3 2 35 35 H 1.08996 * 109.47139 * 300.00142 * 5 3 2 36 36 H 1.09003 * 109.46949 * 59.99931 * 5 3 2 37 37 H 1.08999 * 109.47175 * 179.97438 * 5 3 2 38 38 H 0.96996 * 119.99318 * 359.97438 * 8 6 3 39 39 H 1.08994 * 110.34653 * 86.12955 * 11 9 8 40 40 H 1.08997 * 110.34622 * 323.83073 * 11 9 8 41 41 H 1.08996 * 109.47036 * 300.00022 * 15 13 12 42 42 H 1.09003 * 109.46916 * 60.00253 * 15 13 12 43 43 H 0.97003 * 119.99983 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.87979 * 239.52809 * 25 12 11 45 45 H 1.09001 * 109.87860 * 118.35698 * 25 12 11 46 46 H 0.96696 * 114.00036 * 63.84382 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0695 2.4680 -0.0006 5 6 2.9432 1.3860 -1.2493 6 6 2.9301 1.3848 1.2303 7 8 2.9348 0.4719 2.0289 8 7 3.6990 2.4709 1.4439 9 6 4.5409 2.5487 2.6402 10 1 4.8740 1.5572 2.9468 11 6 3.8026 3.2721 3.8005 12 7 4.8766 3.8161 4.6515 13 6 4.7673 4.1098 5.9623 14 8 3.7155 3.9296 6.5385 15 6 5.9523 4.6621 6.7120 16 16 5.4926 4.9507 8.4387 17 6 7.0176 5.5769 9.0608 18 1 7.8690 5.6756 8.4037 19 6 7.1249 5.9424 10.3955 20 7 6.0874 5.8217 11.1964 21 14 8.7419 6.6056 11.0551 22 1 9.1099 7.8390 10.3146 23 1 8.5955 6.9206 12.4989 24 1 9.8055 5.5847 10.8760 25 6 6.0867 3.9844 3.8336 26 6 5.7490 3.4946 2.4096 27 1 6.5892 2.9492 1.9800 28 8 5.3793 4.5918 1.5720 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.6145 3.4119 -0.0011 33 1 0.4431 2.4101 -0.8908 34 1 0.4425 2.4105 0.8892 35 1 3.6515 0.5574 -1.2494 36 1 2.3165 1.3282 -2.1393 37 1 3.4880 2.3301 -1.2496 38 1 3.6949 3.2011 0.8054 39 1 3.1949 2.5636 4.3632 40 1 3.1824 4.0791 3.4103 41 1 6.7742 3.9474 6.6698 42 1 6.2644 5.6020 6.2566 43 1 6.1623 6.0775 12.1291 44 1 6.8997 3.3880 4.2476 45 1 6.3721 5.0360 3.8059 46 1 6.0888 5.2326 1.4273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702377951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:46 Heat of formation + Delta-G solvation = -125.154822 kcal Electronic energy + Delta-G solvation = -27545.170000 eV Core-core repulsion = 23560.555825 eV Total energy + Delta-G solvation = -3984.614176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73311 -40.85678 -39.19771 -37.31136 -36.30827 -35.44745 -34.59444 -32.34715 -31.41950 -30.13371 -29.02430 -28.30484 -27.66470 -25.38166 -24.41943 -22.48453 -21.74342 -20.88826 -19.90943 -19.47505 -18.62127 -18.29876 -17.87228 -17.24555 -16.89217 -16.88796 -16.55032 -16.16017 -16.00051 -15.75643 -15.44605 -15.29211 -14.91169 -14.82393 -14.52532 -14.21264 -14.16558 -13.54768 -13.44518 -13.35932 -13.24880 -13.16104 -13.06392 -12.86809 -12.72831 -12.64788 -12.63669 -12.24800 -12.12234 -11.77522 -11.66560 -11.42129 -11.13341 -10.92866 -10.87779 -10.33942 -10.29850 -10.23188 -9.79980 -8.70513 -8.35023 -6.14768 1.15856 1.28412 1.42756 1.44250 1.48184 1.53261 1.55442 1.87515 2.26305 2.29990 2.96497 2.99073 3.21538 3.36756 3.45952 3.56283 3.75570 3.83149 3.88181 3.99197 4.06605 4.14023 4.21069 4.37601 4.41687 4.45117 4.53164 4.61114 4.68744 4.70393 4.78149 4.86230 4.86989 4.89697 5.06352 5.10961 5.25949 5.28600 5.35284 5.40581 5.69178 5.81360 6.18752 6.26953 6.49784 6.85244 7.02379 7.05615 7.19136 8.74080 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.002068 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.357150 B =13534.176665 C =14173.252931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C -0.050 4.050 4 C -0.145 4.145 5 C -0.132 4.132 6 C 0.521 3.479 7 O -0.581 6.581 8 N -0.694 5.694 9 C 0.145 3.855 10 H 0.105 0.895 11 C 0.100 3.900 12 N -0.612 5.612 13 C 0.544 3.456 14 O -0.569 6.569 15 C -0.115 4.115 16 S -0.157 6.157 17 C -0.544 4.544 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.261 1.261 25 C 0.059 3.941 26 C 0.111 3.889 27 H 0.124 0.876 28 O -0.564 6.564 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.423 0.577 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -4.839 -33.313 33.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C -0.053 4.053 4 C -0.202 4.202 5 C -0.190 4.190 6 C 0.308 3.692 7 O -0.460 6.460 8 N -0.347 5.347 9 C 0.037 3.963 10 H 0.123 0.877 11 C -0.025 4.025 12 N -0.348 5.348 13 C 0.333 3.667 14 O -0.448 6.448 15 C -0.266 4.266 16 S 0.070 5.930 17 C -0.692 4.692 18 H 0.104 0.896 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.823 3.177 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.063 4.063 26 C 0.051 3.949 27 H 0.142 0.858 28 O -0.374 6.374 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.403 -5.997 -31.696 32.347 hybrid contribution 2.000 0.870 0.437 2.224 sum -0.403 -5.127 -31.259 31.679 Atomic orbital electron populations 1.24173 0.95703 1.03210 0.99383 1.22577 0.96162 0.96754 1.00978 1.19924 0.95723 0.96217 0.93407 1.22003 0.98663 0.96127 1.03385 1.21832 0.99043 1.03253 0.94836 1.21190 0.79356 0.81204 0.87417 1.90718 1.66792 1.39833 1.48678 1.45521 1.43882 1.21216 1.24031 1.22108 0.90269 0.99081 0.84814 0.87684 1.22610 0.90892 0.97448 0.91514 1.48191 1.14736 1.64409 1.07427 1.19942 0.88901 0.77054 0.80821 1.90702 1.31663 1.54344 1.68046 1.23274 0.99141 1.04902 0.99309 1.85717 1.20815 1.84371 1.02132 1.23151 0.97759 1.49734 0.98524 0.89560 1.26187 1.01886 0.95272 0.96022 1.70191 1.32289 1.46242 1.06171 0.84966 0.76740 0.79029 0.77012 1.18410 1.20579 1.18528 1.23293 0.87334 1.04227 0.91448 1.22905 0.95932 0.87801 0.88270 0.85826 1.86318 1.45041 1.37117 1.68932 0.86737 0.87637 0.88019 0.90318 0.88946 0.93173 0.92463 0.89657 0.90008 0.73758 0.93535 0.90970 0.87103 0.86967 0.92005 0.88439 0.88269 0.73794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 13.70 67.78 0.93 -1.78 16 2 C -0.15 -2.45 8.00 25.64 0.21 -2.24 16 3 C -0.05 -0.69 0.84 -53.67 -0.05 -0.73 16 4 C -0.14 -1.51 7.02 71.98 0.51 -1.01 16 5 C -0.13 -1.06 8.35 71.99 0.60 -0.46 16 6 C 0.52 10.68 6.47 87.66 0.57 11.24 16 7 O -0.58 -17.79 15.68 -3.04 -0.05 -17.84 16 8 N -0.69 -10.87 4.96 -435.18 -2.16 -13.03 16 9 C 0.14 2.68 3.33 46.56 0.15 2.83 16 10 H 0.11 2.28 7.54 -2.39 -0.02 2.26 16 11 C 0.10 2.71 6.62 87.02 0.58 3.28 16 12 N -0.61 -17.42 3.33 -810.81 -2.70 -20.12 16 13 C 0.54 21.78 7.87 87.66 0.69 22.47 16 14 O -0.57 -28.88 16.12 -3.03 -0.05 -28.93 16 15 C -0.12 -4.65 5.35 71.24 0.38 -4.27 16 16 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 17 C -0.54 -30.96 9.50 67.95 0.65 -30.32 16 18 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.62 5.49 84.86 0.47 1.09 16 20 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 21 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 C 0.06 0.94 6.25 86.73 0.54 1.48 16 26 C 0.11 1.15 4.19 31.78 0.13 1.28 16 27 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 28 O -0.56 -4.20 12.14 -148.98 -1.81 -6.00 16 29 H 0.11 1.36 5.69 -2.91 -0.02 1.34 16 30 H 0.11 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.08 0.61 7.56 -2.39 -0.02 0.59 16 33 H 0.09 0.62 7.50 -2.39 -0.02 0.61 16 34 H 0.05 0.70 7.49 -2.39 -0.02 0.68 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.38 7.57 -2.39 -0.02 0.36 16 38 H 0.42 4.53 6.42 -92.71 -0.60 3.93 16 39 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.27 8.07 -2.39 -0.02 1.25 16 46 H 0.41 -0.37 9.12 -74.06 -0.68 -1.04 16 Total: -1.00 -88.81 394.10 0.47 -88.34 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.27 Total: 15.76 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.35 Total: 2.87 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -4.57 Total: -89.41 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -1.91 Total: -52.77 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -88.81 0.47 -88.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702377951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.816 kcal (2) G-P(sol) polarization free energy of solvation -88.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds