Wall clock time and date at job start Wed Apr 1 2020 02:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50702 * 120.00284 * 2 1 4 4 C 1.33003 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00060 * 188.24882 * 4 2 1 6 6 O 1.21610 * 119.99977 * 3.31005 * 5 4 2 7 7 N 1.34774 * 119.99975 * 183.31220 * 5 4 2 8 8 C 1.46924 * 120.63144 * 354.79167 * 7 5 4 9 9 C 1.52764 * 109.00755 * 233.58305 * 8 7 5 10 10 C 1.53039 * 109.38168 * 305.58791 * 9 8 7 11 11 H 1.09002 * 109.45885 * 181.26325 * 10 9 8 12 12 N 1.46495 * 109.46039 * 301.21625 * 10 9 8 13 13 C 1.34781 * 120.00435 * 275.07146 * 12 10 9 14 14 O 1.21281 * 119.99480 * 359.97438 * 13 12 10 15 15 C 1.50694 * 120.00124 * 179.97438 * 13 12 10 16 16 S 1.81000 * 109.47067 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00226 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00418 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99338 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00393 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47231 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47129 * 120.00069 * 21 19 17 24 24 H 1.48499 * 109.47615 * 240.00069 * 21 19 17 25 25 C 1.53032 * 109.54052 * 61.24072 * 10 9 8 26 26 H 1.09001 * 109.49959 * 58.58182 * 25 10 9 27 27 O 1.42898 * 109.49849 * 178.68358 * 25 10 9 28 28 C 1.46930 * 120.63000 * 175.06627 * 7 5 4 29 29 H 1.09003 * 109.47263 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47536 * 240.00141 * 1 2 3 31 31 H 1.09008 * 109.46996 * 120.00297 * 1 2 3 32 32 H 1.09001 * 109.47268 * 95.88174 * 3 2 1 33 33 H 1.09000 * 109.46796 * 215.88834 * 3 2 1 34 34 H 1.09003 * 109.46405 * 335.88359 * 3 2 1 35 35 H 1.08000 * 119.99734 * 8.24490 * 4 2 1 36 36 H 1.09002 * 109.58524 * 353.41424 * 8 7 5 37 37 H 1.08998 * 109.58850 * 113.84359 * 8 7 5 38 38 H 1.09002 * 109.56277 * 185.54930 * 9 8 7 39 39 H 1.09002 * 109.38376 * 65.51244 * 9 8 7 40 40 H 0.97002 * 119.99880 * 95.06471 * 12 10 9 41 41 H 1.08997 * 109.47302 * 300.00148 * 15 13 12 42 42 H 1.08994 * 109.47136 * 60.00201 * 15 13 12 43 43 H 0.97006 * 119.99285 * 180.02562 * 20 19 17 44 44 H 0.96707 * 114.00036 * 179.83893 * 27 25 10 45 45 H 1.08995 * 109.58573 * 246.15376 * 28 7 5 46 46 H 1.08998 * 109.58804 * 6.58632 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6315 -1.1583 0.1833 6 8 4.2226 -0.1166 0.3940 7 7 4.3138 -2.3188 0.1172 8 6 3.6040 -3.5975 -0.0229 9 6 4.0601 -4.5438 1.0863 10 6 5.5854 -4.6645 1.0555 11 1 5.9106 -5.3569 1.8320 12 7 6.0090 -5.1665 -0.2540 13 6 6.0269 -6.4926 -0.4939 14 8 5.6927 -7.2705 0.3746 15 6 6.4621 -7.0088 -1.8411 16 16 6.3772 -8.8168 -1.8506 17 6 6.9239 -9.1402 -3.4941 18 1 7.1867 -8.3208 -4.1469 19 6 7.0167 -10.4479 -3.9500 20 7 6.6959 -11.4465 -3.1546 21 14 7.5955 -10.7907 -5.6926 22 1 7.8919 -9.5067 -6.3774 23 1 8.8239 -11.6241 -5.6513 24 1 6.5316 -11.5138 -6.4345 25 6 6.2126 -3.2906 1.3022 26 1 5.8782 -2.9057 2.2656 27 8 7.6366 -3.4098 1.3038 28 6 5.7812 -2.3296 0.1899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 2.5334 1.5671 1.0223 33 1 3.1632 1.2033 -0.6024 34 1 1.6298 2.0887 -0.4199 35 1 1.6403 -2.0823 -0.1332 36 1 2.5300 -3.4303 0.0601 37 1 3.8334 -4.0385 -0.9929 38 1 3.6141 -5.5267 0.9338 39 1 3.7459 -4.1476 2.0519 40 1 6.2765 -4.5443 -0.9485 41 1 5.8035 -6.6105 -2.6129 42 1 7.4861 -6.6918 -2.0382 43 1 6.7611 -12.3604 -3.4731 44 1 8.1011 -2.5747 1.4525 45 1 6.1917 -2.6651 -0.7624 46 1 6.1435 -1.3261 0.4132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702745658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:49 Heat of formation + Delta-G solvation = -127.359749 kcal Electronic energy + Delta-G solvation = -27688.787552 eV Core-core repulsion = 23704.077764 eV Total energy + Delta-G solvation = -3984.709788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81430 -40.59399 -39.10639 -37.01428 -36.33929 -35.31255 -34.57679 -32.69772 -31.47216 -30.28599 -28.78353 -28.58596 -27.65605 -26.18706 -24.31543 -22.70886 -21.88107 -20.39822 -19.89351 -19.07817 -18.56448 -18.26723 -17.79921 -17.21877 -16.87558 -16.78629 -16.60746 -16.28676 -15.85317 -15.52473 -15.10524 -14.98725 -14.94457 -14.85385 -14.47421 -14.41362 -14.19952 -13.66271 -13.58408 -13.46168 -13.23290 -13.16180 -13.12364 -12.92681 -12.85436 -12.64650 -12.57545 -12.44246 -12.06213 -11.78472 -11.62976 -11.38242 -11.15322 -10.90620 -10.58287 -10.26299 -10.17760 -10.10654 -9.56458 -8.65062 -8.34384 -6.11614 0.37950 1.27427 1.41416 1.47198 1.58306 1.63785 1.89026 2.23149 2.25645 2.29767 2.99797 3.03100 3.32637 3.46809 3.65195 3.74965 3.87348 3.93600 3.95462 4.01201 4.06796 4.24026 4.29396 4.36080 4.51402 4.53357 4.57714 4.61361 4.70538 4.72249 4.79638 4.85036 4.91617 4.93099 5.01691 5.06991 5.19919 5.40166 5.42761 5.46678 5.55625 5.63919 6.20601 6.34952 6.47169 6.76301 7.07263 7.14617 7.24588 8.74963 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002270 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.634269 B =12329.632621 C =13052.157818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 C -0.125 4.125 4 C -0.258 4.258 5 C 0.545 3.455 6 O -0.574 6.574 7 N -0.603 5.603 8 C 0.109 3.891 9 C -0.138 4.138 10 C 0.151 3.849 11 H 0.071 0.929 12 N -0.700 5.700 13 C 0.539 3.461 14 O -0.561 6.561 15 C -0.130 4.130 16 S -0.146 6.146 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.273 1.273 25 C 0.100 3.900 26 H 0.082 0.918 27 O -0.570 6.570 28 C 0.084 3.916 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.409 0.591 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.399 0.601 45 H 0.079 0.921 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 27.387 6.519 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 C -0.181 4.181 4 C -0.278 4.278 5 C 0.339 3.661 6 O -0.457 6.457 7 N -0.337 5.337 8 C -0.013 4.013 9 C -0.178 4.178 10 C 0.046 3.954 11 H 0.089 0.911 12 N -0.355 5.355 13 C 0.325 3.675 14 O -0.439 6.439 15 C -0.281 4.281 16 S 0.081 5.919 17 C -0.693 4.693 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.198 1.198 25 C 0.040 3.960 26 H 0.100 0.900 27 O -0.377 6.377 28 C -0.040 4.040 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.133 0.867 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.247 0.753 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.250 0.750 45 H 0.097 0.903 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.794 25.850 7.997 29.132 hybrid contribution 1.258 0.852 -1.903 2.435 sum -9.536 26.701 6.094 29.001 Atomic orbital electron populations 1.21097 0.88832 1.04474 1.03974 1.22903 0.97487 0.94749 0.87237 1.21154 0.99967 0.94274 1.02728 1.22512 0.92011 1.00416 1.12902 1.18983 0.88921 0.82428 0.75803 1.90733 1.71747 1.32070 1.51107 1.47930 1.06257 1.06803 1.72708 1.21822 0.98594 0.82055 0.98871 1.22175 0.93764 1.00866 1.00966 1.20957 0.94477 0.94334 0.85673 0.91061 1.45713 1.68327 1.05654 1.15763 1.19969 0.76441 0.82699 0.88395 1.90686 1.48814 1.57048 1.47360 1.23362 1.05566 1.01129 0.98049 1.85534 1.87896 0.98744 1.19711 1.23230 1.51634 0.95818 0.98621 0.90070 1.26117 0.94845 0.94773 1.03457 1.70191 1.46593 0.99815 1.38112 0.84913 0.77914 0.78716 0.76447 1.18141 1.20035 1.19812 1.22217 0.81847 0.93437 0.98519 0.89996 1.86611 1.17026 1.38459 1.95615 1.22260 0.80633 1.01502 0.99596 0.90167 0.89384 0.89397 0.91200 0.91448 0.90733 0.83224 0.86676 0.90962 0.90282 0.88717 0.75345 0.87165 0.87884 0.92009 0.75029 0.90313 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 10.06 71.23 0.72 -0.10 16 2 C -0.02 -0.27 6.10 -17.62 -0.11 -0.38 16 3 C -0.13 -1.84 8.43 71.24 0.60 -1.24 16 4 C -0.26 -3.61 8.97 23.43 0.21 -3.40 16 5 C 0.54 10.32 7.52 86.57 0.65 10.98 16 6 O -0.57 -14.01 12.66 -4.06 -0.05 -14.07 16 7 N -0.60 -9.78 2.98 -824.01 -2.45 -12.23 16 8 C 0.11 1.58 6.04 86.22 0.52 2.10 16 9 C -0.14 -2.48 5.75 30.53 0.18 -2.30 16 10 C 0.15 3.36 2.47 45.02 0.11 3.47 16 11 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 12 N -0.70 -17.70 4.16 -442.43 -1.84 -19.54 16 13 C 0.54 19.57 7.81 87.65 0.68 20.25 16 14 O -0.56 -25.34 15.52 -3.03 -0.05 -25.39 16 15 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 16 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 17 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.10 1.69 3.36 30.67 0.10 1.79 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 O -0.57 -10.25 13.21 -148.98 -1.97 -12.22 16 28 C 0.08 1.31 5.77 86.36 0.50 1.81 16 29 H 0.08 0.37 7.87 -2.39 -0.02 0.36 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 33 H 0.07 1.32 6.16 -2.39 -0.01 1.31 16 34 H 0.07 0.77 7.94 -2.39 -0.02 0.76 16 35 H 0.15 1.41 5.93 -2.91 -0.02 1.39 16 36 H 0.12 1.17 5.38 -2.39 -0.01 1.16 16 37 H 0.07 1.13 7.74 -2.39 -0.02 1.12 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.41 8.37 6.87 -92.71 -0.64 7.73 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.10 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.40 3.57 9.08 -74.05 -0.67 2.90 16 45 H 0.08 1.18 6.64 -2.39 -0.02 1.16 16 46 H 0.10 1.60 6.99 -2.39 -0.02 1.59 16 Total: -1.00 -81.11 385.92 0.22 -80.90 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.29 Total: 22.65 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.71 Total: -0.98 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.01 Total: -87.32 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -2.07 Total: -51.67 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -81.11 0.22 -80.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702745658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.464 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds