Wall clock time and date at job start Wed Apr 1 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46920 * 2 1 4 4 C 1.32994 * 119.99571 * 122.86484 * 3 2 1 5 5 C 1.50709 * 119.99796 * 175.38859 * 4 3 2 6 6 C 1.47107 * 120.00476 * 355.39662 * 4 3 2 7 7 O 1.21610 * 119.99499 * 262.56460 * 6 4 3 8 8 N 1.34770 * 120.00332 * 82.56214 * 6 4 3 9 9 C 1.47025 * 125.64536 * 354.80527 * 8 6 4 10 10 C 1.54327 * 107.40040 * 178.82475 * 9 8 6 11 11 H 1.09008 * 110.71606 * 96.24576 * 10 9 8 12 12 O 1.42890 * 110.72366 * 219.52116 * 10 9 8 13 13 C 1.55400 * 102.83024 * 337.97973 * 10 9 8 14 14 H 1.08997 * 110.89338 * 277.26480 * 13 10 9 15 15 N 1.46501 * 111.04083 * 153.46569 * 13 10 9 16 16 C 1.34774 * 120.00053 * 161.22892 * 15 13 10 17 17 O 1.21287 * 119.99995 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00173 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47192 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99978 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99787 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00294 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47234 * 90.00374 * 24 22 20 26 26 H 1.48504 * 109.46977 * 210.00105 * 24 22 20 27 27 H 1.48501 * 109.47285 * 330.00086 * 24 22 20 28 28 C 1.47425 * 125.65028 * 174.76410 * 8 6 4 29 29 H 1.08992 * 109.47444 * 299.99679 * 1 2 3 30 30 H 1.08999 * 109.47336 * 60.00264 * 1 2 3 31 31 H 1.09010 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47674 * 240.00195 * 2 1 3 33 33 H 1.09007 * 109.47079 * 119.99949 * 2 1 3 34 34 H 1.07991 * 120.00114 * 302.86889 * 3 2 1 35 35 H 1.08998 * 109.47258 * 275.04233 * 5 4 3 36 36 H 1.09001 * 109.46766 * 35.04284 * 5 4 3 37 37 H 1.09003 * 109.46959 * 155.03878 * 5 4 3 38 38 H 1.08993 * 109.88608 * 298.32325 * 9 8 6 39 39 H 1.09001 * 109.88582 * 59.33740 * 9 8 6 40 40 H 0.96706 * 114.00335 * 298.54906 * 12 10 9 41 41 H 0.97005 * 120.00014 * 341.23328 * 15 13 10 42 42 H 1.09004 * 109.46390 * 299.99502 * 18 16 15 43 43 H 1.08996 * 109.47751 * 59.99310 * 18 16 15 44 44 H 0.96996 * 119.99747 * 180.02562 * 23 22 20 45 45 H 1.08999 * 110.36500 * 323.00548 * 28 8 6 46 46 H 1.08999 * 110.36398 * 85.32507 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8432 1.8394 0.9675 5 6 3.4285 3.2271 0.9123 6 6 3.1690 0.9479 2.0913 7 8 2.5605 1.0441 3.1398 8 7 4.1417 0.0245 1.9589 9 6 4.8788 -0.2722 0.7219 10 6 5.9092 -1.3729 1.0513 11 1 5.5185 -2.3569 0.7917 12 8 7.1459 -1.1251 0.3799 13 6 6.0783 -1.2378 2.5902 14 1 6.7866 -0.4464 2.8354 15 7 6.4888 -2.5108 3.1880 16 6 7.0480 -2.5302 4.4141 17 8 7.2109 -1.4939 5.0228 18 6 7.4708 -3.8395 5.0288 19 16 8.1804 -3.5362 6.6660 20 6 8.5755 -5.1869 7.1389 21 1 8.3608 -6.0065 6.4692 22 6 9.1626 -5.4340 8.3721 23 7 9.4238 -4.4351 9.1886 24 14 9.5808 -7.1841 8.8736 25 1 10.9600 -7.5099 8.4304 26 1 9.4928 -7.3101 10.3507 27 1 8.6218 -8.1236 8.2387 28 6 4.6434 -0.8548 3.0306 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7337 2.0991 -0.7855 35 1 4.3316 3.2166 0.3021 36 1 2.7016 3.9108 0.4738 37 1 3.6754 3.5576 1.9213 38 1 4.1896 -0.6269 -0.0444 39 1 5.3923 0.6235 0.3724 40 1 7.0759 -1.1208 -0.5846 41 1 6.3583 -3.3396 2.7012 42 1 6.6034 -4.4927 5.1245 43 1 8.2159 -4.3162 4.3920 44 1 9.8344 -4.6077 10.0502 45 1 4.6680 -0.3197 3.9799 46 1 4.0211 -1.7459 3.1126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719078986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:46 Heat of formation + Delta-G solvation = -105.463888 kcal Electronic energy + Delta-G solvation = -27362.024069 eV Core-core repulsion = 23378.263756 eV Total energy + Delta-G solvation = -3983.760313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84490 -39.39271 -38.17788 -36.19856 -35.88948 -34.16666 -32.66012 -32.42610 -30.59499 -29.12617 -28.19642 -27.35354 -25.50090 -24.70632 -22.89268 -21.97212 -21.42876 -20.48525 -18.86928 -17.94511 -17.75350 -17.21852 -16.48648 -16.27097 -16.07259 -15.67547 -15.19292 -14.97481 -14.80069 -14.40648 -14.15779 -13.95942 -13.94224 -13.83372 -13.44849 -13.27659 -13.18668 -12.99214 -12.78421 -12.68183 -12.57012 -12.45274 -12.36065 -11.84268 -11.53988 -11.41487 -11.09823 -11.06001 -11.02408 -10.82910 -10.75239 -10.15469 -9.82166 -9.49815 -9.40993 -9.20953 -9.06308 -8.93251 -8.24004 -6.50082 -6.21346 -3.92128 1.34391 2.25041 2.52449 2.95494 3.01445 3.22713 3.26919 3.30942 3.56960 3.64547 3.90282 4.17924 4.20296 4.25197 4.43252 4.47240 4.58205 4.82301 4.86186 4.92390 4.97019 5.01232 5.08693 5.12368 5.13898 5.19559 5.24766 5.30043 5.40245 5.51485 5.57879 5.63389 5.65879 5.71283 5.78996 5.83970 5.87222 5.96820 6.11678 6.14636 6.46741 7.05821 7.14066 7.57151 7.60111 7.80186 8.35327 8.52100 9.23869 10.86067 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.002060 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.684333 B =13585.985915 C =13772.214433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.115 4.115 4 C -0.159 4.159 5 C -0.105 4.105 6 C 0.576 3.424 7 O -0.525 6.525 8 N -0.611 5.611 9 C 0.074 3.926 10 C 0.087 3.913 11 H 0.082 0.918 12 O -0.545 6.545 13 C 0.148 3.852 14 H 0.113 0.887 15 N -0.727 5.727 16 C 0.535 3.465 17 O -0.510 6.510 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.095 3.905 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.382 0.618 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.268 0.732 45 H 0.095 0.905 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 8.878 -27.226 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.133 4.133 4 C -0.162 4.162 5 C -0.162 4.162 6 C 0.365 3.635 7 O -0.401 6.401 8 N -0.347 5.347 9 C -0.051 4.051 10 C 0.027 3.973 11 H 0.100 0.900 12 O -0.350 6.350 13 C 0.041 3.959 14 H 0.131 0.869 15 N -0.381 5.381 16 C 0.321 3.679 17 O -0.383 6.383 18 C -0.303 4.303 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.229 0.771 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.727 10.810 -24.804 30.340 hybrid contribution -0.208 -2.755 -1.281 3.045 sum -13.935 8.055 -26.085 30.651 Atomic orbital electron populations 1.21685 0.94366 1.02106 1.02263 1.20818 0.97108 0.93857 1.02636 1.23350 0.95902 0.97408 0.96673 1.21507 1.02099 0.97502 0.95136 1.20679 1.00817 0.91399 1.03314 1.18175 0.78341 0.78967 0.88023 1.90872 1.50017 1.70072 1.29129 1.48316 1.37157 1.37701 1.11575 1.22775 0.94768 0.99613 0.87900 1.23089 0.84423 0.96880 0.92947 0.89988 1.86669 1.29890 1.94827 1.23620 1.21931 0.95569 0.89064 0.89381 0.86929 1.45819 1.64950 1.08304 1.19059 1.20389 0.75928 0.91431 0.80111 1.90728 1.52707 1.34279 1.60621 1.23525 1.04512 0.96713 1.05573 1.85442 1.77606 1.12118 1.08033 1.22859 1.47301 0.92680 1.05552 0.90902 1.24999 0.94956 0.98323 0.95352 1.70018 1.40048 1.30954 1.09207 0.86160 0.78819 0.82662 0.77802 1.20273 1.20756 1.19706 1.22725 0.93304 0.94545 0.92331 0.92294 0.92399 0.92276 0.90384 0.91416 0.85535 0.90764 0.90823 0.91279 0.90591 0.89896 0.77053 0.76450 0.89075 0.89037 0.92164 0.88701 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.11 -0.69 5.49 -27.88 -0.15 -0.84 16 3 C -0.11 -0.75 9.22 -36.13 -0.33 -1.08 16 4 C -0.16 -1.38 4.93 -102.84 -0.51 -1.88 16 5 C -0.11 -0.72 10.02 36.01 0.36 -0.36 16 6 C 0.58 6.99 5.33 -12.67 -0.07 6.92 16 7 O -0.53 -8.78 17.40 5.27 0.09 -8.69 16 8 N -0.61 -6.31 3.11 -171.91 -0.54 -6.85 16 9 C 0.07 0.48 6.24 -3.06 -0.02 0.47 16 10 C 0.09 0.63 3.97 -24.76 -0.10 0.53 16 11 H 0.08 0.43 8.00 -51.92 -0.42 0.01 16 12 O -0.55 -4.07 13.40 -35.23 -0.47 -4.54 16 13 C 0.15 1.71 3.05 -65.65 -0.20 1.51 16 14 H 0.11 1.63 7.73 -51.93 -0.40 1.23 16 15 N -0.73 -9.25 5.23 -51.60 -0.27 -9.52 16 16 C 0.53 9.77 7.85 -10.99 -0.09 9.69 16 17 O -0.51 -11.49 15.61 5.55 0.09 -11.41 16 18 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.09 1.15 6.58 -2.53 -0.02 1.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 6.13 -51.92 -0.32 0.27 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.08 0.34 7.40 -51.93 -0.38 -0.04 16 39 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 40 H 0.38 0.90 9.11 45.56 0.42 1.32 16 41 H 0.40 3.79 8.52 -40.82 -0.35 3.44 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 45 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -38.49 401.67 -8.36 -46.85 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.48 Total: 1.22 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.33 Total: -0.21 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.07 Total: -41.89 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.29 Total: -24.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.49 -8.36 -46.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719078986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.615 kcal (2) G-P(sol) polarization free energy of solvation -38.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds