Wall clock time and date at job start Wed Apr 1 2020 01:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00119 * 2 1 4 4 O 1.42901 * 109.47334 * 135.00142 * 3 2 1 5 5 C 1.42898 * 114.00162 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47151 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00097 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00071 * 180.02562 * 8 6 5 10 10 C 1.52999 * 110.64203 * 303.14131 * 9 8 6 11 11 C 1.55157 * 110.71889 * 180.02562 * 9 8 6 12 12 C 1.54918 * 101.58155 * 276.95791 * 11 9 8 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34782 * 125.64189 * 204.10422 * 13 12 11 15 15 O 1.21279 * 119.99514 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00344 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47310 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00218 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99568 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00134 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00223 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47162 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47214 * 120.00042 * 22 20 18 25 25 H 1.48507 * 109.47223 * 239.99878 * 22 20 18 26 26 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 27 27 H 1.08000 * 119.99834 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99953 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99997 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47204 * 14.99984 * 3 2 1 31 31 H 1.08996 * 109.47122 * 254.99670 * 3 2 1 32 32 H 1.09005 * 109.47047 * 60.00042 * 5 4 3 33 33 H 1.08997 * 109.47179 * 299.99716 * 5 4 3 34 34 H 0.96997 * 120.00135 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47064 * 296.85720 * 10 9 8 36 36 H 1.09002 * 109.47158 * 56.86181 * 10 9 8 37 37 H 1.09003 * 109.47236 * 176.85510 * 10 9 8 38 38 H 1.09001 * 111.00846 * 35.03499 * 11 9 8 39 39 H 1.09000 * 111.00346 * 158.89031 * 11 9 8 40 40 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 41 41 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 42 42 H 1.09003 * 109.46984 * 300.00232 * 16 14 13 43 43 H 1.08999 * 109.47024 * 59.99815 * 16 14 13 44 44 H 0.97000 * 120.00664 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.88350 * 239.52260 * 26 13 12 46 46 H 1.08997 * 110.01690 * 118.42776 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9085 2.4348 1.0320 6 6 4.9940 2.2568 2.0620 7 8 5.0886 1.2109 2.6688 8 7 5.8597 3.2597 2.3090 9 6 6.9154 3.0864 3.3099 10 6 6.3152 2.7213 4.6691 11 6 7.7832 4.3679 3.4200 12 6 8.7768 4.1723 2.2476 13 7 9.0580 2.7252 2.2288 14 6 10.1637 2.1465 1.7196 15 8 10.2896 0.9409 1.7582 16 6 11.2434 2.9975 1.1024 17 16 12.5858 1.9358 0.5138 18 6 13.6768 3.1556 -0.1393 19 1 13.4086 4.2007 -0.0921 20 6 14.8803 2.7732 -0.7154 21 7 15.2069 1.4994 -0.7735 22 14 16.0365 4.0664 -1.4084 23 1 15.4412 5.4139 -1.2215 24 1 17.3390 3.9973 -0.6986 25 1 16.2483 3.8159 -2.8568 26 6 7.9326 2.0179 2.8569 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4867 -0.9926 32 1 3.2690 3.2695 1.3192 33 1 4.3588 2.6394 0.0607 34 1 5.7839 4.0963 1.8240 35 1 5.6898 3.5412 5.0222 36 1 5.7104 1.8200 4.5689 37 1 7.1179 2.5424 5.3845 38 1 7.1785 5.2630 3.2744 39 1 8.3078 4.4036 4.3748 40 1 8.3200 4.4822 1.3077 41 1 9.6928 4.7345 2.4289 42 1 10.8296 3.5579 0.2640 43 1 11.6295 3.6921 1.8485 44 1 16.0478 1.2321 -1.1764 45 1 8.2851 1.4524 3.7195 46 1 7.4670 1.3444 2.1374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722190948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:18 Heat of formation + Delta-G solvation = -84.957678 kcal Electronic energy + Delta-G solvation = -27065.633469 eV Core-core repulsion = 23082.762373 eV Total energy + Delta-G solvation = -3982.871097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88410 -39.38832 -38.26107 -37.24997 -34.40700 -34.24756 -32.43504 -31.97013 -29.90108 -29.49483 -28.48085 -26.19423 -25.87382 -25.39594 -23.36592 -21.65444 -20.43897 -20.02215 -19.33545 -17.85919 -17.61674 -17.15747 -16.80202 -16.53189 -16.49679 -15.71880 -15.29622 -15.04803 -14.81366 -14.68641 -14.25235 -14.07591 -13.89773 -13.78689 -13.47990 -13.09424 -12.90267 -12.68748 -12.62760 -12.51969 -12.40619 -12.30437 -11.79831 -11.74782 -11.56482 -11.41215 -11.14959 -11.07860 -11.01798 -10.76918 -10.42775 -9.89658 -9.81675 -9.75034 -9.53270 -9.31470 -9.07978 -8.50109 -8.22368 -6.50457 -6.21967 -3.92725 1.68732 2.30368 2.46292 2.90660 3.08304 3.20760 3.25292 3.30282 3.58404 3.62660 3.98169 4.19481 4.26602 4.34524 4.55126 4.55191 4.63656 4.67530 4.75690 4.91465 4.95523 5.02509 5.04154 5.06220 5.13066 5.29565 5.37080 5.43356 5.45241 5.52746 5.59105 5.63195 5.68433 5.88641 5.93093 6.02761 6.11571 6.14439 6.18118 6.24633 6.41215 6.60450 7.14785 7.58944 7.66738 7.92299 8.34736 8.57680 9.23106 10.85507 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002057 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.672694 B =13609.677082 C =14513.900435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.516 3.484 7 O -0.506 6.506 8 N -0.718 5.718 9 C 0.166 3.834 10 C -0.158 4.158 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.626 5.626 14 C 0.547 3.453 15 O -0.512 6.512 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.108 3.892 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.212 9.768 5.684 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.301 3.699 7 O -0.380 6.380 8 N -0.373 5.373 9 C 0.080 3.920 10 C -0.216 4.216 11 C -0.171 4.171 12 C -0.024 4.024 13 N -0.365 5.365 14 C 0.335 3.665 15 O -0.386 6.386 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.016 4.016 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.137 0.863 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.710 6.833 6.202 29.206 hybrid contribution 0.509 2.965 -1.042 3.184 sum -27.201 9.799 5.159 29.369 Atomic orbital electron populations 1.23840 0.95475 1.02333 1.00059 1.22727 0.95621 0.98240 1.00173 1.21627 0.88624 0.96271 0.92412 1.88057 1.44329 1.34786 1.60478 1.22198 0.93193 0.89406 0.98816 1.20194 0.82201 0.83949 0.83573 1.90736 1.71858 1.26542 1.48834 1.45882 1.31626 1.17541 1.42272 1.21259 0.86403 0.95599 0.88778 1.22121 1.02049 1.03575 0.93834 1.23149 0.97115 0.96592 1.00273 1.22307 0.99562 0.82602 0.97969 1.48515 1.19350 1.07187 1.61400 1.20046 0.80824 0.88422 0.77198 1.90725 1.77510 1.14553 1.55787 1.23501 0.99821 1.03411 1.02877 1.85461 1.12797 1.09653 1.75477 1.22896 1.06058 0.94363 1.44998 0.90895 1.24997 0.97174 0.96028 0.95415 1.70028 1.23175 1.14885 1.42112 0.86114 0.80032 0.80674 0.78641 1.19637 1.20547 1.20574 1.22220 0.86088 0.94477 0.98778 0.88454 0.87645 0.86275 0.92568 0.91941 0.90239 0.90047 0.76438 0.92096 0.89641 0.91152 0.89130 0.88529 0.91471 0.89812 0.89399 0.89297 0.92214 0.90535 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.01 0.42 -0.65 16 2 C -0.15 -1.13 9.89 -36.03 -0.36 -1.49 16 3 C 0.09 0.62 6.35 36.00 0.23 0.85 16 4 O -0.36 -3.76 9.86 -55.14 -0.54 -4.31 16 5 C 0.04 0.33 6.42 36.01 0.23 0.56 16 6 C 0.52 5.31 7.13 -10.99 -0.08 5.23 16 7 O -0.51 -7.55 13.48 -14.35 -0.19 -7.74 16 8 N -0.72 -5.48 5.15 -45.91 -0.24 -5.72 16 9 C 0.17 1.51 0.80 -129.98 -0.10 1.41 16 10 C -0.16 -1.40 8.43 37.16 0.31 -1.09 16 11 C -0.13 -0.90 6.07 -24.58 -0.15 -1.05 16 12 C 0.10 0.96 6.67 -2.52 -0.02 0.94 16 13 N -0.63 -9.27 3.33 -170.52 -0.57 -9.84 16 14 C 0.55 10.93 7.87 -10.99 -0.09 10.84 16 15 O -0.51 -12.53 16.19 5.56 0.09 -12.44 16 16 C -0.15 -3.01 5.16 36.00 0.19 -2.82 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.11 1.50 5.83 -3.07 -0.02 1.48 16 27 H 0.10 0.45 7.90 -52.49 -0.41 0.03 16 28 H 0.11 0.52 8.06 -52.48 -0.42 0.09 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 1.70 8.49 -40.82 -0.35 1.35 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.98 5.97 -51.93 -0.31 0.67 16 37 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 39 H 0.10 0.63 8.05 -51.93 -0.42 0.22 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 46 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -38.97 398.07 -8.41 -47.38 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.22 Total: -1.48 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.76 Total: 1.24 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.07 Total: -41.11 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.65 Total: -24.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.97 -8.41 -47.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722190948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.580 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds