Wall clock time and date at job start Wed Apr 1 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99843 * 2 1 4 4 C 1.53006 * 109.47105 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46751 * 64.99649 * 4 3 2 6 6 C 1.36935 * 120.00417 * 274.46638 * 5 4 3 7 7 H 1.08002 * 120.00084 * 146.17130 * 6 5 4 8 8 C 1.38814 * 120.00028 * 326.16856 * 6 5 4 9 9 N 1.31619 * 119.99987 * 335.31642 * 8 6 5 10 10 Si 1.86798 * 120.00159 * 155.30735 * 8 6 5 11 11 H 1.48506 * 109.46773 * 90.00258 * 10 8 6 12 12 H 1.48492 * 109.47550 * 210.00345 * 10 8 6 13 13 H 1.48500 * 109.47248 * 330.00850 * 10 8 6 14 14 C 1.46502 * 119.99622 * 94.46956 * 5 4 3 15 15 C 1.53002 * 109.46933 * 269.99866 * 14 5 4 16 16 N 1.46499 * 109.47002 * 180.02562 * 15 14 5 17 17 C 1.34780 * 120.00224 * 179.97438 * 16 15 14 18 18 O 1.21776 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.41720 * 120.00236 * 179.97438 * 17 16 15 20 20 S 1.75815 * 125.47580 * 359.97286 * 19 17 16 21 21 C 1.70579 * 91.66102 * 180.02562 * 20 19 17 22 22 C 1.50698 * 124.42779 * 179.97438 * 21 20 19 23 23 C 1.33613 * 111.14370 * 0.02562 * 21 20 19 24 24 C 1.37276 * 125.47460 * 180.28112 * 19 17 16 25 25 O 1.35778 * 123.46919 * 359.97438 * 24 19 17 26 26 C 1.42904 * 116.99875 * 180.22320 * 25 24 19 27 27 H 1.09000 * 109.47213 * 300.00755 * 1 2 3 28 28 H 1.09000 * 109.46929 * 60.00240 * 1 2 3 29 29 H 1.08995 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47603 * 60.00061 * 3 2 1 31 31 H 1.09000 * 109.47198 * 299.99451 * 3 2 1 32 32 H 1.09003 * 109.47017 * 305.00241 * 4 3 2 33 33 H 1.08999 * 109.47483 * 184.99918 * 4 3 2 34 34 H 0.97001 * 120.00254 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.46858 * 149.99939 * 14 5 4 36 36 H 1.09000 * 109.47239 * 29.99894 * 14 5 4 37 37 H 1.08992 * 109.47159 * 60.00116 * 15 14 5 38 38 H 1.09007 * 109.46681 * 299.99606 * 15 14 5 39 39 H 0.97006 * 120.00246 * 359.97438 * 16 15 14 40 40 H 1.09001 * 109.47409 * 270.00500 * 22 21 20 41 41 H 1.09005 * 109.46905 * 29.99780 * 22 21 20 42 42 H 1.08998 * 109.47169 * 150.00168 * 22 21 20 43 43 H 1.08003 * 122.45192 * 179.97438 * 23 21 20 44 44 H 1.09007 * 109.46589 * 60.00150 * 26 25 24 45 45 H 1.08997 * 109.47500 * 179.97438 * 26 25 24 46 46 H 1.08993 * 109.46950 * 300.00422 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0102 -0.8004 -1.3639 7 1 3.7919 -1.2692 -2.3120 8 6 4.3249 -1.5808 -0.2599 9 7 5.0414 -1.0744 0.7213 10 14 3.7314 -3.3495 -0.1665 11 1 4.7463 -4.2450 -0.7776 12 1 3.5279 -3.7290 1.2546 13 1 2.4484 -3.4806 -0.9026 14 6 4.3819 1.4028 -2.3815 15 6 3.1635 1.7013 -3.2575 16 7 3.5689 2.5397 -4.3884 17 6 2.6555 2.9304 -5.2993 18 8 1.4933 2.5860 -5.1823 19 6 3.0475 3.7418 -6.3930 20 16 4.6788 4.3208 -6.7009 21 6 4.1763 5.1364 -8.1122 22 6 5.0896 5.9365 -9.0048 23 6 2.8668 4.9741 -8.3223 24 6 2.2134 4.2071 -7.3791 25 8 0.8834 3.9376 -7.4236 26 6 0.1460 4.4891 -8.5164 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.2610 -1.6196 1.4929 35 1 5.1340 0.8788 -2.9714 36 1 4.7993 2.3381 -2.0087 37 1 2.4115 2.2252 -2.6676 38 1 2.7462 0.7659 -3.6304 39 1 4.4948 2.8137 -4.4818 40 1 5.1155 6.9716 -8.6640 41 1 6.0947 5.5163 -8.9665 42 1 4.7195 5.9004 -10.0294 43 1 2.3563 5.4140 -9.1663 44 1 0.5526 4.1135 -9.4555 45 1 -0.9010 4.1981 -8.4321 46 1 0.2242 5.5761 -8.4957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725754241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:14 Heat of formation + Delta-G solvation = -56.343457 kcal Electronic energy + Delta-G solvation = -27771.262054 eV Core-core repulsion = 23789.631763 eV Total energy + Delta-G solvation = -3981.630291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.34897 -38.89014 -37.16787 -36.58259 -35.63080 -34.00087 -32.19666 -31.27985 -29.49510 -28.36248 -27.72136 -26.39725 -25.53839 -23.88922 -23.38293 -22.01246 -20.98324 -20.31073 -19.38397 -18.38114 -17.08160 -16.71580 -16.18626 -16.10993 -15.66041 -15.15323 -14.95458 -14.80110 -14.57978 -14.40012 -14.25068 -14.12643 -13.90840 -13.56186 -13.41080 -13.17498 -12.89107 -12.69560 -12.47407 -12.29227 -11.84380 -11.72952 -11.70228 -11.17678 -11.11418 -11.08269 -10.78050 -10.69354 -10.57305 -10.47191 -9.96623 -9.90053 -9.64765 -9.63158 -8.97018 -8.71982 -8.51003 -8.32813 -8.19539 -6.55447 -5.65673 -3.17966 0.32123 1.21435 1.55737 2.15466 3.28815 3.49800 3.53796 3.57346 3.59649 3.67664 4.23530 4.65174 4.75867 4.80448 4.82375 4.84244 4.91038 5.04803 5.12197 5.25882 5.38731 5.44948 5.52280 5.56134 5.62200 5.85693 5.87097 5.91328 5.96880 6.04154 6.18687 6.24988 6.37290 6.40312 6.66032 6.72099 6.79115 6.80157 7.03330 7.09230 7.73643 7.86270 7.95583 8.19852 8.57425 8.63407 9.28115 9.94299 10.45107 11.35933 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002646 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.439734 B =10578.341071 C =11397.355068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.243 4.243 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.099 3.901 16 N -0.726 5.726 17 C 0.587 3.413 18 O -0.526 6.526 19 C -0.319 4.319 20 S 0.227 5.773 21 C -0.168 4.168 22 C -0.088 4.088 23 C -0.219 4.219 24 C 0.187 3.813 25 O -0.270 6.270 26 C 0.023 3.977 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.252 0.748 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 16.813 -18.077 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.373 4.373 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.026 4.026 16 N -0.378 5.378 17 C 0.375 3.625 18 O -0.405 6.405 19 C -0.439 4.439 20 S 0.492 5.508 21 C -0.288 4.288 22 C -0.146 4.146 23 C -0.252 4.252 24 C 0.127 3.873 25 O -0.182 6.182 26 C -0.072 4.072 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.223 0.777 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.165 0.835 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.208 15.988 -16.912 23.304 hybrid contribution -1.781 -0.103 -1.014 2.052 sum -2.988 15.885 -17.925 24.137 Atomic orbital electron populations 1.22634 0.84389 1.01403 0.98422 1.88229 1.16415 1.27438 1.94794 1.23461 0.98660 0.84318 0.96876 1.21161 0.87915 0.96521 0.93363 1.43583 1.74073 1.02375 1.08994 1.18824 1.40746 0.80739 0.96948 0.92418 1.24864 0.96953 0.97632 0.98278 1.69971 1.36453 1.36722 1.10268 0.86390 0.79091 0.84949 0.76778 1.21946 1.21753 1.20284 1.21011 0.92825 0.94741 0.90462 1.22436 1.00488 0.93667 0.86056 1.46006 1.10981 1.53750 1.27039 1.15567 0.85900 0.79913 0.81170 1.90869 1.17717 1.56336 1.75593 1.22843 0.97374 1.17775 1.05940 1.83021 1.05903 1.43956 1.17881 1.23945 0.98586 1.03996 1.02253 1.20455 0.97488 0.98840 0.97853 1.19936 0.94667 1.07132 1.03497 1.18220 0.84461 0.92505 0.92148 1.86362 1.15510 1.69785 1.46501 1.23166 0.96934 0.98464 0.88651 0.95658 0.95158 0.90832 0.95921 0.95237 0.87482 0.94123 0.93801 0.92681 0.94338 0.92331 0.91529 0.77683 0.90028 0.90613 0.90220 0.83474 0.92676 0.87909 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -8.27 9.96 -35.23 -0.35 -8.62 16 3 C 0.05 0.99 6.28 37.16 0.23 1.22 16 4 C 0.14 3.22 5.83 -4.04 -0.02 3.20 16 5 N -0.57 -14.09 2.45 -173.23 -0.43 -14.52 16 6 C -0.24 -6.74 8.74 -15.06 -0.13 -6.87 16 7 H 0.06 1.63 7.94 -52.49 -0.42 1.21 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.54 16 9 N -0.89 -25.85 11.36 55.49 0.63 -25.22 16 10 Si 0.90 22.84 29.62 -169.99 -5.04 17.81 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.14 2.81 5.82 -4.04 -0.02 2.78 16 15 C 0.10 1.95 6.00 -4.04 -0.02 1.92 16 16 N -0.73 -12.11 5.54 -63.19 -0.35 -12.46 16 17 C 0.59 10.62 7.60 -14.93 -0.11 10.51 16 18 O -0.53 -11.66 15.84 -12.40 -0.20 -11.86 16 19 C -0.32 -4.65 6.28 -38.60 -0.24 -4.89 16 20 S 0.23 2.26 21.94 -107.50 -2.36 -0.10 16 21 C -0.17 -1.43 6.27 -35.93 -0.23 -1.66 16 22 C -0.09 -0.44 10.31 36.00 0.37 -0.07 16 23 C -0.22 -2.12 9.02 -41.28 -0.37 -2.49 16 24 C 0.19 2.51 6.70 -40.01 -0.27 2.24 16 25 O -0.27 -3.87 9.36 -36.56 -0.34 -4.22 16 26 C 0.02 0.20 9.94 101.05 1.00 1.20 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.62 6.47 -51.93 -0.34 0.29 16 32 H 0.11 2.90 5.37 -51.93 -0.28 2.62 16 33 H 0.04 0.86 7.84 -51.93 -0.41 0.45 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.05 1.12 8.04 -51.93 -0.42 0.71 16 36 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 37 H 0.06 1.22 6.47 -51.93 -0.34 0.89 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.39 5.36 7.44 -40.82 -0.30 5.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.15 1.02 6.99 -52.48 -0.37 0.65 16 44 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.36 7.88 -51.93 -0.41 -0.05 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -35.44 393.92 -8.31 -43.75 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.03 Total: 0.21 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 1.21 Total: 9.30 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.14 Total: -52.20 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.89 Total: -24.69 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.04 Total: 17.81 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.36 Total: -0.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.44 -8.31 -43.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725754241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.596 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds