Wall clock time and date at job start Wed Apr 1 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32991 * 119.99878 * 2 1 4 4 C 1.50701 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.47099 * 119.99865 * 180.02562 * 3 2 1 6 6 O 1.21607 * 119.99961 * 5.35076 * 5 3 2 7 7 N 1.34776 * 119.99862 * 185.34865 * 5 3 2 8 8 C 1.47068 * 136.05568 * 185.61643 * 7 5 3 9 9 C 1.53246 * 88.08137 * 207.20406 * 8 7 5 10 10 C 1.52999 * 114.32355 * 220.47037 * 9 8 7 11 11 C 1.53005 * 109.46894 * 160.27360 * 10 9 8 12 12 O 1.42894 * 109.47053 * 184.62466 * 11 10 9 13 13 N 1.46503 * 114.19719 * 87.72949 * 9 8 7 14 14 C 1.34781 * 120.00009 * 79.64370 * 13 9 8 15 15 O 1.21281 * 119.99669 * 4.22282 * 14 13 9 16 16 C 1.50693 * 119.99986 * 184.22315 * 14 13 9 17 17 S 1.80997 * 109.47429 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00371 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99590 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00280 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00274 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99804 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47282 * 90.00311 * 22 20 18 24 24 H 1.48507 * 109.47238 * 210.00453 * 22 20 18 25 25 H 1.48500 * 109.47293 * 330.00116 * 22 20 18 26 26 C 1.47070 * 136.05851 * 5.98658 * 7 5 3 27 27 H 1.09005 * 109.47321 * 300.00300 * 1 2 3 28 28 H 1.09007 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47495 * 60.00135 * 1 2 3 30 30 H 1.08001 * 119.99539 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47456 * 94.61846 * 4 3 2 32 32 H 1.09006 * 109.47118 * 214.61942 * 4 3 2 33 33 H 1.08999 * 109.47267 * 334.61822 * 4 3 2 34 34 H 1.08996 * 113.46982 * 321.93483 * 8 7 5 35 35 H 1.09003 * 113.46828 * 92.37630 * 8 7 5 36 36 H 1.09006 * 109.46964 * 280.26817 * 10 9 8 37 37 H 1.08998 * 109.47672 * 40.27340 * 10 9 8 38 38 H 1.09000 * 109.46959 * 304.62524 * 11 10 9 39 39 H 1.09000 * 109.46772 * 64.62798 * 11 10 9 40 40 H 0.96702 * 114.00262 * 179.97438 * 12 11 10 41 41 H 0.96997 * 119.99657 * 259.65186 * 13 9 8 42 42 H 1.08999 * 109.47053 * 300.00689 * 16 14 13 43 43 H 1.09009 * 109.47214 * 60.00160 * 16 14 13 44 44 H 0.96997 * 120.00092 * 179.97438 * 21 20 18 45 45 H 1.08998 * 113.46562 * 267.62328 * 26 7 5 46 46 H 1.09003 * 113.46329 * 38.00601 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6429 1.1517 -0.0006 6 8 4.2509 0.1032 -0.0992 7 7 4.3168 2.3139 0.1082 8 6 5.7259 2.7306 0.0465 9 6 5.3637 3.9089 0.9570 10 6 6.0414 5.2278 0.5804 11 6 5.2685 6.3936 1.2005 12 8 5.8367 7.6290 0.7615 13 7 5.4396 3.6069 2.3886 14 6 6.6336 3.6011 3.0137 15 8 7.6358 3.9204 2.4099 16 6 6.7233 3.1979 4.4630 17 16 8.4461 3.2923 5.0100 18 6 8.2631 2.7832 6.6868 19 1 7.2858 2.5303 7.0707 20 6 9.3747 2.7080 7.5145 21 7 9.2381 2.3272 8.7671 22 14 11.0648 3.1461 6.8506 23 1 11.3178 4.5946 7.0575 24 1 12.0982 2.3559 7.5670 25 1 11.1223 2.8358 5.3995 26 6 3.9674 3.7223 0.3475 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 2.0469 -0.9354 0.0004 31 1 1.3080 2.8132 1.0236 32 1 1.9694 3.1943 -0.5844 33 1 0.4329 2.3072 -0.4414 34 1 6.4096 2.0197 0.5103 35 1 6.0454 3.0345 -0.9504 36 1 7.0650 5.2303 0.9552 37 1 6.0514 5.3346 -0.5043 38 1 4.2247 6.3433 0.8905 39 1 5.3282 6.3320 2.2871 40 1 5.3953 8.4130 1.1160 41 1 4.6305 3.4110 2.8864 42 1 6.1137 3.8710 5.0657 43 1 6.3603 2.1767 4.5792 44 1 10.0150 2.2743 9.3454 45 1 3.8137 4.2929 -0.5684 46 1 3.1581 3.8526 1.0660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726029982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:22 Heat of formation + Delta-G solvation = -65.648779 kcal Electronic energy + Delta-G solvation = -27838.844932 eV Core-core repulsion = 23856.811132 eV Total energy + Delta-G solvation = -3982.033800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47027 -39.39977 -38.11294 -36.95471 -35.85165 -33.89207 -32.45283 -31.99033 -30.20272 -29.13881 -28.09704 -26.72646 -26.20902 -25.63065 -23.60305 -21.69471 -20.86146 -19.48429 -18.59551 -17.99126 -17.64213 -16.96145 -16.84236 -16.35112 -16.04656 -15.82378 -15.26378 -14.99150 -14.91854 -14.45213 -14.34151 -14.02535 -13.83881 -13.64553 -13.53543 -13.37449 -13.17863 -12.85061 -12.80169 -12.67707 -12.55809 -12.39824 -12.02051 -11.92053 -11.64679 -11.58930 -11.27970 -11.01855 -10.79597 -10.63909 -10.19306 -10.10575 -9.86452 -9.49777 -9.43016 -9.25786 -9.01468 -8.88579 -8.52716 -6.93580 -6.30138 -4.02170 1.04245 2.47627 2.62568 2.82597 2.98072 3.17062 3.32376 3.49964 3.57604 3.65949 3.99141 4.08606 4.32005 4.51193 4.58004 4.66278 4.74594 4.78412 4.82394 4.90151 4.90201 5.02448 5.04798 5.07198 5.09037 5.14872 5.20537 5.23742 5.30632 5.40344 5.44463 5.48815 5.55571 5.60475 5.70651 5.76946 5.96361 6.06620 6.17400 6.19609 6.44962 7.39330 7.43604 7.47099 7.91139 7.92852 8.37116 8.40291 9.15942 10.79145 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.002915 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.676041 B = 9602.647796 C =11187.775337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.120 4.120 5 C 0.584 3.416 6 O -0.537 6.537 7 N -0.640 5.640 8 C 0.100 3.900 9 C 0.148 3.852 10 C -0.125 4.125 11 C 0.083 3.917 12 O -0.572 6.572 13 N -0.714 5.714 14 C 0.537 3.463 15 O -0.507 6.507 16 C -0.125 4.125 17 S -0.137 6.137 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.099 3.901 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.379 0.621 41 H 0.402 0.598 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.102 0.898 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.700 5.330 -19.724 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.176 4.176 5 C 0.376 3.624 6 O -0.415 6.415 7 N -0.375 5.375 8 C -0.023 4.023 9 C 0.060 3.940 10 C -0.163 4.163 11 C 0.005 3.995 12 O -0.377 6.377 13 N -0.369 5.369 14 C 0.323 3.677 15 O -0.380 6.380 16 C -0.275 4.275 17 S 0.089 5.911 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.025 4.025 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.225 0.775 41 H 0.237 0.763 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.329 4.608 -20.938 28.207 hybrid contribution -1.242 -0.069 1.320 1.814 sum -19.571 4.539 -19.619 28.081 Atomic orbital electron populations 1.20998 0.91936 1.03204 1.02582 1.23606 0.96357 0.97911 0.91351 1.21311 0.92104 0.96874 1.08809 1.21001 1.00022 0.94300 1.02294 1.17937 0.87259 0.81427 0.75784 1.90824 1.70086 1.30188 1.50436 1.49316 1.09893 1.06141 1.72153 1.23389 0.84156 0.94944 0.99833 1.21272 0.95933 0.94493 0.82351 1.21755 1.03268 0.89717 1.01585 1.22040 0.95153 0.84154 0.98136 1.86480 1.61097 1.15671 1.74491 1.45567 1.09814 1.73886 1.07601 1.20293 0.82482 0.76250 0.88643 1.90663 1.35088 1.45444 1.66832 1.23281 1.05246 1.05029 0.93960 1.84791 1.03206 1.89478 1.13632 1.22307 0.98841 1.52512 0.93306 0.89416 1.24711 0.99110 0.93413 0.94068 1.69934 1.31269 1.45246 1.05226 0.86737 0.83609 0.79610 0.81906 1.19187 1.19928 1.15884 1.23532 0.96946 0.81465 1.00568 0.90639 0.91278 0.90641 0.85576 0.91018 0.91426 0.91013 0.89363 0.88548 0.86996 0.90046 0.94154 0.93404 0.77459 0.76267 0.88511 0.88424 0.91914 0.87968 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 8.85 36.01 0.32 -0.33 16 2 C -0.07 -0.60 9.84 -36.13 -0.36 -0.96 16 3 C -0.19 -1.69 6.00 -102.85 -0.62 -2.31 16 4 C -0.12 -0.65 8.05 36.01 0.29 -0.36 16 5 C 0.58 7.35 7.99 -12.67 -0.10 7.25 16 6 O -0.54 -9.16 17.01 5.27 0.09 -9.07 16 7 N -0.64 -6.66 3.66 -186.74 -0.68 -7.34 16 8 C 0.10 1.13 7.98 -8.63 -0.07 1.06 16 9 C 0.15 1.44 0.75 -131.83 -0.10 1.34 16 10 C -0.12 -1.29 4.90 -26.73 -0.13 -1.42 16 11 C 0.08 0.75 6.88 37.16 0.26 1.00 16 12 O -0.57 -5.75 13.66 -35.23 -0.48 -6.24 16 13 N -0.71 -8.18 5.18 -47.55 -0.25 -8.42 16 14 C 0.54 8.81 7.65 -10.99 -0.08 8.72 16 15 O -0.51 -9.94 13.60 5.56 0.08 -9.87 16 16 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 17 S -0.14 -3.42 18.55 -107.50 -1.99 -5.42 16 18 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 22 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.23 -5.97 6.74 56.52 0.38 -5.59 16 26 C 0.10 0.66 4.64 -8.50 -0.04 0.62 16 27 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 28 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.08 0.30 7.41 -51.93 -0.38 -0.08 16 30 H 0.13 1.23 7.50 -52.49 -0.39 0.84 16 31 H 0.07 0.33 7.64 -51.93 -0.40 -0.07 16 32 H 0.07 0.33 5.97 -51.93 -0.31 0.02 16 33 H 0.07 0.30 6.33 -51.93 -0.33 -0.03 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.90 8.03 -51.93 -0.42 0.49 16 36 H 0.11 1.62 5.78 -51.93 -0.30 1.32 16 37 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 38 H 0.04 0.25 7.55 -51.93 -0.39 -0.15 16 39 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.38 2.07 9.12 45.56 0.42 2.49 16 41 H 0.40 3.65 8.67 -40.82 -0.35 3.30 16 42 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.10 0.47 7.93 -51.93 -0.41 0.06 16 46 H 0.09 0.42 6.73 -51.93 -0.35 0.07 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -37.91 391.33 -7.63 -45.53 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.15 Total: 3.10 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.19 Total: 0.56 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.16 Total: -41.57 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.32 Total: -25.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.91 -7.63 -45.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726029982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.116 kcal (2) G-P(sol) polarization free energy of solvation -37.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds