Wall clock time and date at job start Wed Apr 1 2020 01:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 110.45582 * 2 1 4 4 O 1.21284 * 119.99861 * 121.86265 * 3 2 1 5 5 N 1.34771 * 119.99691 * 301.86294 * 3 2 1 6 6 C 1.46961 * 120.59694 * 354.90309 * 5 3 2 7 7 C 1.53373 * 108.63960 * 235.20638 * 6 5 3 8 8 N 1.46957 * 108.63402 * 310.57821 * 7 6 5 9 9 C 1.34780 * 120.59616 * 235.19869 * 8 7 6 10 10 O 1.21281 * 119.99407 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00501 * 179.97438 * 9 8 7 12 12 S 1.80997 * 109.47507 * 180.02562 * 11 9 8 13 13 C 1.76194 * 100.00092 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00211 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99931 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99767 * 359.72356 * 15 13 12 17 17 Si 1.86799 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46674 * 90.00208 * 17 15 13 19 19 H 1.48497 * 109.46849 * 209.99993 * 17 15 13 20 20 H 1.48499 * 109.47196 * 330.00443 * 17 15 13 21 21 C 1.46966 * 118.81517 * 55.47483 * 8 7 6 22 22 C 1.46971 * 120.59212 * 174.89015 * 5 3 2 23 23 C 1.54510 * 110.50882 * 122.60193 * 2 1 3 24 24 C 1.54797 * 103.91368 * 118.81580 * 23 2 1 25 25 O 1.44428 * 104.80215 * 335.91930 * 24 23 2 26 26 C 1.44421 * 105.27463 * 40.58429 * 25 24 23 27 27 H 1.09002 * 109.47356 * 65.87188 * 1 2 3 28 28 H 1.09001 * 109.46962 * 185.86985 * 1 2 3 29 29 H 1.09004 * 109.47324 * 305.86564 * 1 2 3 30 30 H 1.09004 * 109.60602 * 115.46075 * 6 5 3 31 31 H 1.08999 * 109.61283 * 354.95557 * 6 5 3 32 32 H 1.08997 * 109.60909 * 190.83114 * 7 6 5 33 33 H 1.09004 * 109.74928 * 70.40571 * 7 6 5 34 34 H 1.09004 * 109.46898 * 60.00182 * 11 9 8 35 35 H 1.09001 * 109.46914 * 300.00699 * 11 9 8 36 36 H 0.96997 * 119.99964 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.60562 * 64.26540 * 21 8 7 38 38 H 1.09000 * 109.61345 * 184.77630 * 21 8 7 39 39 H 1.09001 * 109.60502 * 244.53315 * 22 5 3 40 40 H 1.08996 * 109.61263 * 5.04229 * 22 5 3 41 41 H 1.08998 * 110.51460 * 237.43044 * 23 2 1 42 42 H 1.08997 * 110.51592 * 0.13849 * 23 2 1 43 43 H 1.08995 * 110.31366 * 217.11420 * 24 23 2 44 44 H 1.09003 * 110.53003 * 94.82635 * 24 23 2 45 45 H 1.09002 * 110.37260 * 200.66011 * 26 25 24 46 46 H 1.09000 * 110.37593 * 78.32056 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7881 1.7863 0.8921 5 7 1.7148 2.2586 -0.9913 6 6 0.9216 1.7890 -2.1359 7 6 1.6816 2.1177 -3.4269 8 7 2.0951 3.5271 -3.3824 9 6 1.7534 4.3739 -4.3738 10 8 1.0985 3.9747 -5.3133 11 6 2.1841 5.8168 -4.3144 12 16 1.5748 6.6892 -5.7785 13 6 2.2050 8.3030 -5.4574 14 1 2.7765 8.4910 -4.5606 15 6 1.9660 9.3330 -6.3567 16 7 1.2731 9.1028 -7.4520 17 14 2.6335 11.0440 -6.0160 18 1 3.9886 11.1738 -6.6095 19 1 1.7301 12.0568 -6.6187 20 1 2.7127 11.2615 -4.5492 21 6 2.8932 3.9956 -2.2407 22 6 2.1285 3.6682 -0.9469 23 6 2.0713 -0.7797 1.2191 24 6 2.8800 -1.9399 0.5898 25 8 2.3101 -2.1160 -0.7256 26 6 2.0713 -0.7797 -1.2187 27 1 -0.3634 0.4201 -0.9379 28 1 -0.3633 -1.0223 0.1051 29 1 -0.3634 0.6021 0.8328 30 1 -0.0451 2.2925 -2.1421 31 1 0.7750 0.7114 -2.0619 32 1 1.0311 1.9541 -4.2860 33 1 2.5622 1.4804 -3.5083 34 1 3.2725 5.8702 -4.2859 35 1 1.7740 6.2817 -3.4178 36 1 1.1064 9.8224 -8.0807 37 1 3.8582 3.4888 -2.2365 38 1 3.0431 5.0726 -2.3163 39 1 1.2477 4.3055 -0.8687 40 1 2.7789 3.8318 -0.0877 41 1 2.7199 -0.1440 1.8219 42 1 1.2490 -1.1673 1.8205 43 1 2.7603 -2.8484 1.1799 44 1 3.9344 -1.6739 0.5139 45 1 1.3302 -0.7969 -2.0178 46 1 3.0011 -0.3338 -1.5720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736632552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:51 Heat of formation + Delta-G solvation = -92.174908 kcal Electronic energy + Delta-G solvation = -28376.902793 eV Core-core repulsion = 24393.718734 eV Total energy + Delta-G solvation = -3983.184059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51528 -39.84646 -38.75365 -37.05600 -34.77038 -33.69854 -32.47072 -31.91501 -30.34974 -29.35235 -27.68157 -27.09024 -25.53676 -24.26951 -23.81211 -23.04814 -21.66527 -20.05054 -18.71996 -17.88801 -17.44607 -16.92817 -16.70283 -16.14848 -15.96960 -15.77875 -15.64223 -15.33095 -15.13493 -14.84132 -14.55809 -14.14834 -13.99087 -13.86722 -13.47756 -13.24711 -13.09612 -12.77900 -12.71950 -12.48541 -12.42310 -12.03680 -11.97436 -11.78560 -11.61232 -11.60467 -11.29267 -11.23416 -11.09629 -11.06528 -10.79319 -10.23256 -10.06753 -9.85398 -9.53182 -9.43906 -9.10608 -8.50311 -8.28982 -6.55771 -6.25938 -3.97147 2.15898 2.38295 2.85398 2.92295 3.19625 3.22012 3.27283 3.44439 3.51785 3.78347 4.03574 4.15866 4.20726 4.36876 4.47382 4.50832 4.67025 4.69919 4.72800 4.82260 4.93616 5.00820 5.02720 5.06001 5.09544 5.14173 5.21901 5.28454 5.32648 5.38089 5.41142 5.49378 5.51178 5.60807 5.62382 5.64351 5.68577 5.78530 6.02014 6.04941 6.26438 6.41450 6.92848 7.37513 7.55484 7.71525 8.30807 8.41004 9.19528 10.81445 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.002241 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.371539 B =12488.677176 C =13021.251449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.531 3.469 4 O -0.535 6.535 5 N -0.606 5.606 6 C 0.077 3.923 7 C 0.097 3.903 8 N -0.622 5.622 9 C 0.537 3.463 10 O -0.513 6.513 11 C -0.152 4.152 12 S -0.060 6.060 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.096 3.904 22 C 0.096 3.904 23 C -0.142 4.142 24 C 0.044 3.956 25 O -0.368 6.368 26 C 0.056 3.944 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -20.473 17.475 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C 0.318 3.682 4 O -0.412 6.412 5 N -0.339 5.339 6 C -0.046 4.046 7 C -0.027 4.027 8 N -0.359 5.359 9 C 0.325 3.675 10 O -0.387 6.387 11 C -0.302 4.302 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.028 4.028 22 C -0.027 4.027 23 C -0.180 4.180 24 C -0.033 4.033 25 O -0.286 6.286 26 C -0.021 4.021 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.084 -20.973 16.260 26.538 hybrid contribution 1.235 1.872 1.406 2.647 sum 1.319 -19.101 17.667 26.051 Atomic orbital electron populations 1.22089 0.91077 1.03635 1.03454 1.22161 0.98565 0.92905 0.98411 1.20280 0.79938 0.86758 0.81207 1.90674 1.36433 1.77397 1.36674 1.47966 1.53934 1.10223 1.21808 1.22700 0.95174 1.01492 0.85244 1.21917 0.99988 0.82567 0.98186 1.48058 1.55489 1.09518 1.22793 1.20396 0.78660 0.87363 0.81082 1.90698 1.37886 1.77598 1.32510 1.23561 1.04659 0.94379 1.07640 1.85411 1.70881 1.05442 1.21570 1.22847 1.40168 0.94727 1.10652 0.90912 1.24997 0.94865 0.99258 0.94448 1.70013 1.37035 1.33246 1.09933 0.86164 0.78782 0.81954 0.78590 1.20243 1.20732 1.19677 1.22202 0.94092 1.01940 0.84612 1.22168 1.00555 0.80926 0.99073 1.23096 1.01189 0.96923 0.96749 1.23533 0.97102 0.98873 0.83770 1.89157 1.82967 1.25075 1.31445 1.23670 1.00507 0.82958 0.94932 0.90873 0.90642 0.91609 0.90066 0.87692 0.87351 0.91304 0.89167 0.89169 0.92141 0.90888 0.87807 0.90399 0.87723 0.88061 0.89859 0.88675 0.91934 0.87773 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 7.96 37.16 0.30 -0.57 16 2 C -0.12 -0.88 0.69 -154.09 -0.11 -0.99 16 3 C 0.53 5.28 6.40 -10.99 -0.07 5.21 16 4 O -0.54 -6.99 14.69 5.55 0.08 -6.91 16 5 N -0.61 -5.55 2.94 -172.21 -0.51 -6.05 16 6 C 0.08 0.61 4.75 -3.60 -0.02 0.59 16 7 C 0.10 0.99 6.59 -3.60 -0.02 0.96 16 8 N -0.62 -7.96 2.94 -172.22 -0.51 -8.47 16 9 C 0.54 9.48 7.72 -10.99 -0.08 9.40 16 10 O -0.51 -10.95 15.27 5.56 0.08 -10.87 16 11 C -0.15 -2.92 4.50 36.00 0.16 -2.76 16 12 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 13 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 14 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 17 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.10 0.99 6.53 -3.37 -0.02 0.96 16 22 C 0.10 0.91 6.61 -3.36 -0.02 0.89 16 23 C -0.14 -1.04 6.34 -24.99 -0.16 -1.20 16 24 C 0.04 0.31 7.64 38.10 0.29 0.60 16 25 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 26 C 0.06 0.41 5.52 37.93 0.21 0.62 16 27 H 0.07 0.38 5.15 -51.93 -0.27 0.11 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.60 2.41 -51.93 -0.13 0.48 16 32 H 0.11 1.22 6.99 -51.93 -0.36 0.86 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.61 7.90 -51.91 -0.41 1.20 16 35 H 0.09 1.59 7.73 -51.91 -0.40 1.19 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.05 5.91 -51.93 -0.31 0.74 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.02 6.99 -51.93 -0.36 0.66 16 41 H 0.10 0.90 6.50 -51.93 -0.34 0.56 16 42 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.58 6.18 -51.93 -0.32 0.26 16 46 H 0.07 0.51 7.86 -51.93 -0.41 0.10 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -35.39 371.03 -8.15 -43.54 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.63 Total: -1.50 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.65 Total: 1.08 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.28 Total: -39.53 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.24 Total: -21.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.39 -8.15 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736632552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.633 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds