Wall clock time and date at job start Wed Apr 1 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.47096 * 119.99856 * 2 1 4 4 O 1.21615 * 119.99968 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00186 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99873 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47035 * 179.97438 * 6 5 3 8 8 H 1.09000 * 109.47173 * 294.99899 * 7 6 5 9 9 C 1.52994 * 109.46985 * 174.99989 * 7 6 5 10 10 O 1.42903 * 109.47353 * 304.99249 * 9 7 6 11 11 N 1.46499 * 109.47138 * 54.99480 * 7 6 5 12 12 C 1.34771 * 120.00093 * 204.99839 * 11 7 6 13 13 O 1.21281 * 120.00030 * 0.02562 * 12 11 7 14 14 C 1.50699 * 120.00180 * 179.97438 * 12 11 7 15 15 S 1.80999 * 109.47175 * 180.02562 * 14 12 11 16 16 C 1.76207 * 100.00169 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99381 * 0.02562 * 16 15 14 18 18 C 1.38792 * 120.00418 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00596 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99801 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47497 * 89.99942 * 20 18 16 22 22 H 1.48499 * 109.47238 * 209.99734 * 20 18 16 23 23 H 1.48499 * 109.47190 * 329.99717 * 20 18 16 24 24 C 1.32996 * 119.99904 * 179.97438 * 2 1 3 25 25 C 1.51401 * 136.31333 * 179.62624 * 24 2 1 26 26 C 1.53384 * 87.51787 * 206.06039 * 25 24 2 27 27 C 1.51405 * 136.31719 * 0.02562 * 24 2 1 28 28 H 1.08999 * 109.47286 * 89.99968 * 1 2 3 29 29 H 1.08997 * 109.47151 * 210.00007 * 1 2 3 30 30 H 1.08998 * 109.46926 * 329.99614 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47073 * 299.99562 * 6 5 3 33 33 H 1.09000 * 109.47212 * 59.99645 * 6 5 3 34 34 H 1.08992 * 109.47829 * 65.00014 * 9 7 6 35 35 H 1.09007 * 109.46887 * 184.99813 * 9 7 6 36 36 H 0.96696 * 114.00338 * 179.97438 * 10 9 7 37 37 H 0.97004 * 119.99694 * 25.00798 * 11 7 6 38 38 H 1.08992 * 109.47365 * 300.00615 * 14 12 11 39 39 H 1.09007 * 109.46794 * 60.00623 * 14 12 11 40 40 H 0.96996 * 120.00618 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.56230 * 320.64329 * 25 24 2 42 42 H 1.09001 * 113.55642 * 91.38145 * 25 24 2 43 43 H 1.09000 * 113.96860 * 220.29614 * 26 25 24 44 44 H 1.08996 * 113.59854 * 88.79308 * 26 25 24 45 45 H 1.09003 * 113.55794 * 268.62248 * 27 24 2 46 46 H 1.09000 * 113.56229 * 39.34999 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3012 3.7099 0.0000 7 6 1.3070 4.8728 0.0001 8 1 0.7404 4.8666 -0.9311 9 6 2.0679 6.1942 0.1252 10 8 2.9005 6.1564 1.2860 11 7 0.3878 4.7294 1.1318 12 6 -0.8366 5.2902 1.0808 13 8 -1.1777 5.9133 0.0978 14 6 -1.7823 5.1422 2.2447 15 16 -3.3331 5.9991 1.8748 16 6 -4.2244 5.6734 3.3596 17 1 -3.7669 5.0937 4.1478 18 6 -5.5141 6.1616 3.5161 19 7 -6.1801 5.9179 4.6250 20 14 -6.3054 7.1635 2.1525 21 1 -7.0281 6.2551 1.2263 22 1 -7.2632 8.1330 2.7424 23 1 -5.2542 7.8989 1.4047 24 6 2.1720 -1.1518 0.0005 25 6 3.6251 -1.5771 -0.0061 26 6 3.1708 -2.8821 -0.6719 27 6 1.8139 -2.6229 0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.5987 2.4411 0.0005 32 1 2.9285 3.7676 0.8895 33 1 2.9272 3.7676 -0.8905 34 1 2.6856 6.3431 -0.7603 35 1 1.3570 7.0157 0.2146 36 1 3.4139 6.9634 1.4282 37 1 0.6606 4.2308 1.9180 38 1 -1.9838 4.0850 2.4170 39 1 -1.3309 5.5761 3.1371 40 1 -7.0813 6.2594 4.7346 41 1 4.2567 -0.9604 -0.6456 42 1 4.0420 -1.7189 0.9910 43 1 3.6835 -3.7699 -0.3017 44 1 3.1398 -2.8289 -1.7602 45 1 1.7338 -3.0516 0.9997 46 1 0.9604 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738880643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:26 Heat of formation + Delta-G solvation = -118.013946 kcal Electronic energy + Delta-G solvation = -27116.211826 eV Core-core repulsion = 23131.907302 eV Total energy + Delta-G solvation = -3984.304524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33446 -40.70538 -39.31265 -38.24811 -36.40389 -34.94475 -34.66033 -33.90469 -31.99147 -29.79798 -27.83820 -27.53871 -27.05791 -26.37647 -23.87723 -22.85473 -21.60722 -21.47775 -19.99794 -19.35498 -18.60849 -17.79356 -17.71171 -17.43060 -17.10075 -16.76252 -16.56986 -16.52423 -16.08579 -15.83429 -15.35038 -15.17457 -14.91020 -14.72369 -14.62072 -14.58890 -14.04518 -13.73366 -13.65830 -13.34327 -13.33478 -13.31888 -13.05399 -12.94910 -12.86893 -12.60839 -12.50068 -12.37022 -11.89993 -11.86228 -11.45342 -11.17170 -11.16117 -10.87737 -10.72187 -10.52790 -10.25413 -10.21412 -9.75616 -8.97736 -8.50423 -6.20956 0.33599 0.99111 1.32359 1.46916 1.52754 1.55705 2.03744 2.20299 2.23909 2.26727 2.71799 2.87865 3.30141 3.38703 3.55001 3.56769 3.81320 3.84038 3.95148 4.01119 4.23385 4.23653 4.28315 4.39018 4.45032 4.48576 4.58006 4.65435 4.73279 4.73936 4.76037 4.79939 4.90846 4.97984 5.03382 5.07349 5.29153 5.34406 5.35598 5.39453 5.71272 5.71680 6.12930 6.38722 6.46796 6.85010 6.94635 7.12782 7.16939 8.62014 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.002498 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.259239 B =11204.172980 C =13017.637140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.185 4.185 3 C 0.553 3.447 4 O -0.578 6.578 5 N -0.720 5.720 6 C 0.127 3.873 7 C 0.141 3.859 8 H 0.105 0.895 9 C 0.070 3.930 10 O -0.581 6.581 11 N -0.705 5.705 12 C 0.542 3.458 13 O -0.555 6.555 14 C -0.114 4.114 15 S -0.168 6.168 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.044 3.956 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.235 1.235 24 C -0.077 4.077 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.409 0.591 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.398 0.602 37 H 0.413 0.587 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.276 0.724 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.671 -13.177 -11.461 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.188 4.188 3 C 0.343 3.657 4 O -0.459 6.459 5 N -0.372 5.372 6 C 0.003 3.997 7 C 0.036 3.964 8 H 0.123 0.877 9 C -0.009 4.009 10 O -0.389 6.389 11 N -0.359 5.359 12 C 0.328 3.672 13 O -0.432 6.432 14 C -0.265 4.265 15 S 0.059 5.941 16 C -0.677 4.677 17 H 0.079 0.921 18 C -0.161 4.161 19 N -0.556 5.556 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.186 1.186 23 H -0.159 1.159 24 C -0.079 4.079 25 C -0.149 4.149 26 C -0.169 4.169 27 C -0.134 4.134 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.248 0.752 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.556 -12.689 -12.930 27.400 hybrid contribution -0.360 0.336 1.488 1.567 sum 20.197 -12.353 -11.442 26.295 Atomic orbital electron populations 1.20702 0.88784 1.03750 1.03175 1.20543 0.96931 0.90501 1.10832 1.18619 0.86852 0.84718 0.75479 1.90750 1.14964 1.88281 1.51928 1.45903 1.11023 1.05216 1.75089 1.21454 0.93727 0.80626 1.03862 1.21383 0.89773 0.94273 0.90942 0.87736 1.22451 0.93250 0.95950 0.89290 1.86406 1.61345 1.44779 1.46384 1.45770 1.13341 1.55792 1.20965 1.19862 0.82087 0.78002 0.87237 1.90698 1.76667 1.41602 1.34267 1.23275 0.96790 1.05869 1.00534 1.84634 1.12403 1.71541 1.25547 1.22475 1.02948 1.39647 1.02598 0.92098 1.25585 0.96593 0.96133 0.97828 1.70018 1.12818 1.45649 1.27115 0.85852 0.80437 0.80131 0.79853 1.18577 1.18608 1.15920 1.23693 0.98628 0.95082 0.90505 1.22268 0.93580 0.97106 1.01924 1.22701 0.96450 0.97462 1.00336 1.22355 0.98986 0.89223 1.02880 0.90398 0.89984 0.91410 0.75358 0.90410 0.89588 0.90016 0.93945 0.75223 0.75039 0.86692 0.87393 0.91411 0.91960 0.88252 0.88633 0.89697 0.86732 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.57 71.24 0.68 -0.87 16 2 C -0.19 -3.53 6.00 -18.70 -0.11 -3.65 16 3 C 0.55 12.85 7.75 86.57 0.67 13.52 16 4 O -0.58 -17.10 15.15 -4.08 -0.06 -17.16 16 5 N -0.72 -13.66 5.33 -466.69 -2.49 -16.15 16 6 C 0.13 2.34 5.12 86.38 0.44 2.78 16 7 C 0.14 2.69 2.53 44.99 0.11 2.80 16 8 H 0.10 2.12 7.58 -2.39 -0.02 2.10 16 9 C 0.07 1.21 6.85 71.98 0.49 1.71 16 10 O -0.58 -9.74 12.64 -148.98 -1.88 -11.63 16 11 N -0.70 -15.49 4.46 -442.55 -1.98 -17.47 16 12 C 0.54 16.88 7.81 87.66 0.68 17.57 16 13 O -0.55 -21.18 15.52 -3.03 -0.05 -21.23 16 14 C -0.11 -4.05 6.16 71.24 0.44 -3.62 16 15 S -0.17 -8.13 18.55 -56.49 -1.05 -9.18 16 16 C -0.53 -30.16 10.04 67.95 0.68 -29.48 16 17 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 18 C 0.04 2.54 5.50 84.86 0.47 3.00 16 19 N -0.92 -55.33 13.97 21.65 0.30 -55.03 16 20 Si 0.92 44.10 27.74 68.60 1.90 46.00 16 21 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.24 -11.24 6.74 99.48 0.67 -10.57 16 24 C -0.08 -1.35 6.60 -17.17 -0.11 -1.46 16 25 C -0.11 -1.90 6.99 30.06 0.21 -1.69 16 26 C -0.13 -1.45 8.17 30.94 0.25 -1.20 16 27 C -0.10 -1.07 7.71 30.15 0.23 -0.84 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.01 7.91 -2.39 -0.02 0.99 16 30 H 0.07 0.95 6.70 -2.39 -0.02 0.94 16 31 H 0.41 6.93 6.24 -92.71 -0.58 6.35 16 32 H 0.08 1.63 7.40 -2.38 -0.02 1.62 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.40 3.55 9.12 -74.06 -0.68 2.88 16 37 H 0.41 7.86 8.60 -92.71 -0.80 7.06 16 38 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 39 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 40 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.06 1.33 7.49 -2.39 -0.02 1.31 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -77.14 398.04 -1.22 -78.36 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -1.06 Total: 24.90 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.14 Total: -1.42 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -4.16 Total: -88.65 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.99 Total: -50.02 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.90 Total: 46.00 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.05 Total: -9.18 kcal Total: -77.14 -1.22 -78.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738880643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.656 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds