Wall clock time and date at job start Wed Apr 1 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99696 * 2 1 4 4 O 1.21284 * 120.00077 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00268 * 359.97438 * 3 2 1 6 6 S 1.81004 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.76202 * 99.99930 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.38797 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31631 * 120.00041 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00303 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46791 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47360 * 119.99337 * 11 9 7 14 14 H 1.48502 * 109.46854 * 239.99990 * 11 9 7 15 15 C 1.46490 * 120.00134 * 179.97438 * 2 1 3 16 16 C 1.53493 * 114.20743 * 60.00343 * 15 2 1 17 17 N 1.47072 * 87.98710 * 220.15033 * 16 15 2 18 18 C 1.34777 * 136.05745 * 207.08945 * 17 16 15 19 19 O 1.21373 * 119.99808 * 359.97438 * 18 17 16 20 20 C 1.49086 * 119.99971 * 180.27157 * 18 17 16 21 21 O 1.20783 * 120.00068 * 359.71795 * 20 18 17 22 22 C 1.50698 * 119.99781 * 179.72456 * 20 18 17 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 18 24 24 C 1.53001 * 109.47207 * 299.99369 * 22 20 18 25 25 C 1.52995 * 109.47490 * 59.99786 * 22 20 18 26 26 C 1.47067 * 87.88518 * 27.33784 * 17 16 15 27 27 H 1.08997 * 109.47162 * 270.00183 * 1 2 3 28 28 H 1.09000 * 109.46724 * 30.00394 * 1 2 3 29 29 H 1.08999 * 109.47009 * 149.99635 * 1 2 3 30 30 H 1.09001 * 109.46744 * 299.99614 * 5 3 2 31 31 H 1.08996 * 109.47305 * 60.00004 * 5 3 2 32 32 H 0.97000 * 120.00270 * 180.02562 * 10 9 7 33 33 H 1.09004 * 113.28603 * 193.07197 * 15 2 1 34 34 H 1.08997 * 113.46889 * 105.36837 * 16 15 2 35 35 H 1.09003 * 113.51905 * 334.93383 * 16 15 2 36 36 H 1.09007 * 109.47302 * 59.99534 * 23 22 20 37 37 H 1.08998 * 109.47611 * 179.97438 * 23 22 20 38 38 H 1.09000 * 109.47527 * 299.99994 * 23 22 20 39 39 H 1.09001 * 109.47038 * 60.00421 * 24 22 20 40 40 H 1.09003 * 109.47342 * 180.02562 * 24 22 20 41 41 H 1.09001 * 109.47406 * 300.00436 * 24 22 20 42 42 H 1.09003 * 109.47440 * 60.00167 * 25 22 20 43 43 H 1.09003 * 109.47199 * 179.97438 * 25 22 20 44 44 H 1.09001 * 109.47438 * 299.99999 * 25 22 20 45 45 H 1.09004 * 113.46176 * 87.43589 * 26 17 16 46 46 H 1.08996 * 113.46707 * 217.87964 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 0.0003 7 6 1.4414 5.2083 -0.0013 8 1 0.3762 5.0305 -0.0020 9 6 1.9281 6.5081 -0.0017 10 7 3.2265 6.7247 -0.0003 11 14 0.7407 7.9501 -0.0027 12 1 -0.6548 7.4422 -0.0036 13 1 0.9659 8.7777 1.2095 14 1 0.9669 8.7767 -1.2155 15 6 2.1975 -1.2686 0.0006 16 6 1.9061 -2.1642 -1.2115 17 7 1.9169 -3.3163 -0.2974 18 6 2.1842 -4.6333 -0.3991 19 8 2.5093 -5.1057 -1.4689 20 6 2.0741 -5.5112 0.8008 21 8 1.7504 -5.0412 1.8653 22 6 2.3670 -6.9850 0.6856 23 6 2.1819 -7.6499 2.0510 24 6 1.4081 -7.6181 -0.3246 25 6 3.8088 -7.1831 0.2137 26 6 1.5015 -2.3999 0.7752 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7591 2.5298 -0.8909 31 1 0.7584 2.5303 0.8891 32 1 3.5667 7.6331 -0.0002 33 1 3.2576 -1.1540 0.2270 34 1 2.7146 -2.1823 -1.9422 35 1 0.9323 -1.9791 -1.6649 36 1 1.1548 -7.5088 2.3878 37 1 2.3933 -8.7160 1.9677 38 1 2.8653 -7.1989 2.7705 39 1 1.5403 -7.1443 -1.2973 40 1 1.6196 -8.6842 -0.4076 41 1 0.3809 -7.4769 0.0116 42 1 4.4920 -6.7322 0.9334 43 1 4.0207 -8.2491 0.1308 44 1 3.9412 -6.7093 -0.7590 45 1 0.4209 -2.2762 0.8462 46 1 1.9654 -2.6187 1.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739299580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:55 Heat of formation + Delta-G solvation = -57.394956 kcal Electronic energy + Delta-G solvation = -27263.716057 eV Core-core repulsion = 23282.040170 eV Total energy + Delta-G solvation = -3981.675887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54123 -40.37460 -38.93175 -38.03055 -36.20839 -34.83151 -32.46405 -30.59346 -28.80253 -27.82512 -27.75602 -27.12557 -26.58210 -25.66688 -25.46243 -22.50957 -20.65188 -19.37251 -18.88769 -17.82540 -17.69947 -17.14888 -16.93006 -16.29227 -15.98165 -15.64544 -15.60791 -14.84357 -14.79298 -14.43068 -14.32645 -13.93399 -13.63228 -13.43109 -13.29018 -13.18319 -13.05798 -12.88643 -12.65219 -12.61748 -12.58290 -12.43647 -12.30760 -12.08643 -12.00870 -11.87766 -11.43954 -11.36110 -11.13065 -11.09593 -11.05786 -10.79108 -9.85136 -9.71699 -9.48885 -9.21458 -9.10821 -8.72782 -8.27473 -6.54791 -6.25289 -3.96416 0.57758 1.94884 2.55009 2.82717 2.86785 3.19255 3.21963 3.28292 3.39144 3.54838 4.00747 4.07479 4.16432 4.35427 4.38367 4.43906 4.65512 4.78053 4.83840 4.91797 5.00717 5.08589 5.10112 5.12169 5.18449 5.19455 5.28416 5.33146 5.36111 5.38095 5.42175 5.48487 5.49198 5.59986 5.66797 5.75796 5.81219 5.83081 5.84296 6.06123 6.40107 6.49473 7.07362 7.33375 7.48288 7.56445 8.31686 8.38779 9.20256 10.82148 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.035908 B = 0.001834 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.577371 B =15265.744964 C =15375.394915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.537 3.463 4 O -0.510 6.510 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.117 3.883 16 C 0.086 3.914 17 N -0.621 5.621 18 C 0.507 3.493 19 O -0.504 6.504 20 C 0.364 3.636 21 O -0.411 6.411 22 C -0.093 4.093 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.145 4.145 26 C 0.089 3.911 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.268 0.732 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -28.142 1.213 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C 0.326 3.674 4 O -0.383 6.383 5 C -0.301 4.301 6 S 0.165 5.835 7 C -0.683 4.683 8 H 0.092 0.908 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.011 3.989 16 C -0.037 4.037 17 N -0.358 5.358 18 C 0.293 3.707 19 O -0.380 6.380 20 C 0.233 3.767 21 O -0.280 6.280 22 C -0.095 4.095 23 C -0.193 4.193 24 C -0.201 4.201 25 C -0.202 4.202 26 C -0.035 4.035 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.780 -28.225 1.220 28.653 hybrid contribution -2.370 0.945 -0.038 2.552 sum -7.150 -27.280 1.182 28.226 Atomic orbital electron populations 1.21854 0.79311 1.03467 1.02304 1.47716 1.06798 1.04664 1.75674 1.20439 0.87969 0.84399 0.74638 1.90712 1.13738 1.86665 1.47149 1.23568 1.04637 0.96899 1.04950 1.85437 1.07945 0.93356 1.96720 1.22889 0.94317 0.92138 1.58988 0.90829 1.24998 0.95683 0.98415 0.94501 1.70024 1.11739 1.21623 1.46818 0.86113 0.80321 0.81107 0.77925 1.19603 1.20556 1.20561 1.22772 0.99128 0.81915 0.95066 1.23679 1.03420 0.80994 0.95602 1.49281 1.65260 1.05685 1.15581 1.20525 0.79179 0.80425 0.90579 1.90738 1.45840 1.72452 1.28933 1.24901 0.73014 0.91736 0.87053 1.90414 1.30856 1.76852 1.29848 1.20966 0.99064 0.90600 0.98852 1.21791 1.02849 1.00488 0.94206 1.21918 0.97638 1.01466 0.99090 1.21925 0.92236 1.03230 1.02817 1.23707 1.01180 0.85116 0.93448 0.92112 0.89957 0.91322 0.89012 0.89002 0.92196 0.84453 0.89106 0.88806 0.91944 0.91301 0.91844 0.90212 0.90988 0.92523 0.92370 0.90996 0.90152 0.88592 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.92 59.85 0.53 1.16 16 2 N -0.61 -7.56 3.11 -173.56 -0.54 -8.10 16 3 C 0.54 9.40 7.69 -10.99 -0.08 9.32 16 4 O -0.51 -10.94 15.37 5.55 0.09 -10.85 16 5 C -0.15 -2.85 4.71 36.01 0.17 -2.68 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 11 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.12 1.29 4.57 -67.68 -0.31 0.99 16 16 C 0.09 0.86 8.17 -8.50 -0.07 0.79 16 17 N -0.62 -6.48 3.69 -185.70 -0.68 -7.16 16 18 C 0.51 5.63 7.80 -11.76 -0.09 5.53 16 19 O -0.50 -6.42 14.16 5.48 0.08 -6.34 16 20 C 0.36 3.54 6.03 -29.81 -0.18 3.36 16 21 O -0.41 -4.49 14.81 5.98 0.09 -4.40 16 22 C -0.09 -0.70 0.76 -155.66 -0.12 -0.82 16 23 C -0.14 -0.87 7.76 37.16 0.29 -0.58 16 24 C -0.14 -0.95 8.29 37.16 0.31 -0.65 16 25 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 26 C 0.09 0.82 7.04 -8.36 -0.06 0.76 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 29 H 0.07 0.43 6.18 -51.93 -0.32 0.11 16 30 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 31 H 0.09 1.61 8.11 -51.92 -0.42 1.18 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.14 1.77 7.29 -51.93 -0.38 1.39 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.79 6.97 -51.93 -0.36 0.43 16 36 H 0.06 0.42 8.10 -51.93 -0.42 -0.01 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.08 0.65 6.43 -51.93 -0.33 0.31 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.69 6.43 -51.93 -0.33 0.35 16 45 H 0.10 0.72 6.57 -51.93 -0.34 0.38 16 46 H 0.10 0.91 7.38 -51.93 -0.38 0.52 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.60 389.35 -7.65 -42.25 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.94 Total: -2.30 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 0.89 Total: 3.88 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.49 Total: -40.27 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.25 Total: -21.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.60 -7.65 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739299580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.142 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds