Wall clock time and date at job start Wed Apr 1 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99696 * 2 1 4 4 O 1.21284 * 120.00077 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00268 * 359.97438 * 3 2 1 6 6 S 1.81004 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.76202 * 99.99930 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.38797 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31631 * 120.00041 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00303 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46791 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47360 * 119.99337 * 11 9 7 14 14 H 1.48502 * 109.46854 * 239.99990 * 11 9 7 15 15 C 1.46490 * 120.00134 * 179.97438 * 2 1 3 16 16 C 1.53493 * 114.20743 * 60.00343 * 15 2 1 17 17 N 1.47072 * 87.98710 * 220.15033 * 16 15 2 18 18 C 1.34777 * 136.05745 * 207.08945 * 17 16 15 19 19 O 1.21373 * 119.99808 * 359.97438 * 18 17 16 20 20 C 1.49086 * 119.99971 * 180.27157 * 18 17 16 21 21 O 1.20783 * 120.00068 * 359.71795 * 20 18 17 22 22 C 1.50698 * 119.99781 * 179.72456 * 20 18 17 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 18 24 24 C 1.53001 * 109.47207 * 299.99369 * 22 20 18 25 25 C 1.52995 * 109.47490 * 59.99786 * 22 20 18 26 26 C 1.47067 * 87.88518 * 27.33784 * 17 16 15 27 27 H 1.08997 * 109.47162 * 270.00183 * 1 2 3 28 28 H 1.09000 * 109.46724 * 30.00394 * 1 2 3 29 29 H 1.08999 * 109.47009 * 149.99635 * 1 2 3 30 30 H 1.09001 * 109.46744 * 299.99614 * 5 3 2 31 31 H 1.08996 * 109.47305 * 60.00004 * 5 3 2 32 32 H 0.97000 * 120.00270 * 180.02562 * 10 9 7 33 33 H 1.09004 * 113.28603 * 193.07197 * 15 2 1 34 34 H 1.08997 * 113.46889 * 105.36837 * 16 15 2 35 35 H 1.09003 * 113.51905 * 334.93383 * 16 15 2 36 36 H 1.09007 * 109.47302 * 59.99534 * 23 22 20 37 37 H 1.08998 * 109.47611 * 179.97438 * 23 22 20 38 38 H 1.09000 * 109.47527 * 299.99994 * 23 22 20 39 39 H 1.09001 * 109.47038 * 60.00421 * 24 22 20 40 40 H 1.09003 * 109.47342 * 180.02562 * 24 22 20 41 41 H 1.09001 * 109.47406 * 300.00436 * 24 22 20 42 42 H 1.09003 * 109.47440 * 60.00167 * 25 22 20 43 43 H 1.09003 * 109.47199 * 179.97438 * 25 22 20 44 44 H 1.09001 * 109.47438 * 299.99999 * 25 22 20 45 45 H 1.09004 * 113.46176 * 87.43589 * 26 17 16 46 46 H 1.08996 * 113.46707 * 217.87964 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 0.0003 7 6 1.4414 5.2083 -0.0013 8 1 0.3762 5.0305 -0.0020 9 6 1.9281 6.5081 -0.0017 10 7 3.2265 6.7247 -0.0003 11 14 0.7407 7.9501 -0.0027 12 1 -0.6548 7.4422 -0.0036 13 1 0.9659 8.7777 1.2095 14 1 0.9669 8.7767 -1.2155 15 6 2.1975 -1.2686 0.0006 16 6 1.9061 -2.1642 -1.2115 17 7 1.9169 -3.3163 -0.2974 18 6 2.1842 -4.6333 -0.3991 19 8 2.5093 -5.1057 -1.4689 20 6 2.0741 -5.5112 0.8008 21 8 1.7504 -5.0412 1.8653 22 6 2.3670 -6.9850 0.6856 23 6 2.1819 -7.6499 2.0510 24 6 1.4081 -7.6181 -0.3246 25 6 3.8088 -7.1831 0.2137 26 6 1.5015 -2.3999 0.7752 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7591 2.5298 -0.8909 31 1 0.7584 2.5303 0.8891 32 1 3.5667 7.6331 -0.0002 33 1 3.2576 -1.1540 0.2270 34 1 2.7146 -2.1823 -1.9422 35 1 0.9323 -1.9791 -1.6649 36 1 1.1548 -7.5088 2.3878 37 1 2.3933 -8.7160 1.9677 38 1 2.8653 -7.1989 2.7705 39 1 1.5403 -7.1443 -1.2973 40 1 1.6196 -8.6842 -0.4076 41 1 0.3809 -7.4769 0.0116 42 1 4.4920 -6.7322 0.9334 43 1 4.0207 -8.2491 0.1308 44 1 3.9412 -6.7093 -0.7590 45 1 0.4209 -2.2762 0.8462 46 1 1.9654 -2.6187 1.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739299580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:53 Heat of formation + Delta-G solvation = -80.543581 kcal Electronic energy + Delta-G solvation = -27264.719857 eV Core-core repulsion = 23282.040170 eV Total energy + Delta-G solvation = -3982.679687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.38843 -41.30646 -40.03084 -39.01146 -36.86414 -35.93698 -34.57028 -31.72790 -30.01996 -28.38962 -28.28492 -27.96528 -27.66600 -27.35817 -26.38073 -23.47792 -21.50767 -20.47761 -19.72921 -19.56483 -18.65084 -18.27642 -17.72200 -17.37082 -16.87077 -16.84774 -16.74804 -16.48672 -16.10872 -15.43368 -15.26390 -14.86899 -14.65941 -14.62025 -14.22412 -14.15630 -14.11183 -13.88418 -13.53447 -13.47525 -13.26805 -13.20361 -13.12454 -13.07705 -13.05769 -12.91000 -12.65591 -12.60335 -12.55564 -12.21217 -11.97733 -11.77863 -11.69560 -11.14744 -10.98710 -10.44683 -10.23896 -10.06569 -9.76683 -8.65586 -8.33568 -6.11368 -0.21844 1.06947 1.31549 1.42501 1.48391 1.50662 1.58656 1.75120 2.09763 2.28422 2.63524 3.01005 3.14692 3.27729 3.41279 3.56290 3.69359 3.79497 3.83577 3.98534 4.04744 4.20157 4.23160 4.30185 4.33906 4.41349 4.51446 4.53675 4.64827 4.68829 4.69641 4.81211 4.82786 4.89807 4.89868 4.96971 4.98225 5.18114 5.28241 5.29295 5.42995 5.43971 5.74501 6.13612 6.21615 6.28647 6.63496 7.07574 7.08391 8.75772 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.035908 B = 0.001834 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.577371 B =15265.744964 C =15375.394915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.537 3.463 4 O -0.562 6.562 5 C -0.123 4.123 6 S -0.156 6.156 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 0.998 3.002 12 H -0.254 1.254 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.111 3.889 16 C 0.091 3.909 17 N -0.626 5.626 18 C 0.501 3.499 19 O -0.525 6.525 20 C 0.367 3.633 21 O -0.425 6.425 22 C -0.093 4.093 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.143 4.143 26 C 0.103 3.897 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.270 0.730 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -29.721 1.514 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.329 5.329 3 C 0.325 3.675 4 O -0.439 6.439 5 C -0.274 4.274 6 S 0.071 5.929 7 C -0.690 4.690 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.820 3.180 12 H -0.178 1.178 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.005 3.995 16 C -0.032 4.032 17 N -0.362 5.362 18 C 0.287 3.713 19 O -0.402 6.402 20 C 0.237 3.763 21 O -0.294 6.294 22 C -0.094 4.094 23 C -0.190 4.190 24 C -0.197 4.197 25 C -0.200 4.200 26 C -0.020 4.020 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.143 0.857 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.947 -29.848 1.527 30.926 hybrid contribution -1.422 1.292 -0.143 1.926 sum -9.369 -28.556 1.384 30.086 Atomic orbital electron populations 1.22246 0.76313 1.05254 1.04204 1.47588 1.08443 1.03381 1.73485 1.20205 0.87248 0.85353 0.74727 1.90700 1.15813 1.87401 1.50005 1.23384 1.02683 0.94418 1.06874 1.85644 1.12748 0.97481 1.97043 1.23231 0.94697 0.92527 1.58552 0.89662 1.26127 0.97537 1.01750 0.93842 1.70193 1.14124 1.22366 1.48185 0.84912 0.78325 0.76812 0.77943 1.17789 1.20112 1.20122 1.22718 0.98163 0.81769 0.96877 1.23696 1.04357 0.80319 0.94820 1.49365 1.64976 1.05746 1.16112 1.20906 0.78804 0.80648 0.90893 1.90729 1.46782 1.72905 1.29767 1.25147 0.72404 0.92566 0.86197 1.90406 1.31752 1.77230 1.30029 1.21063 0.99459 0.88982 0.99946 1.21786 1.02540 1.01583 0.93059 1.21900 0.97630 1.02419 0.97777 1.21916 0.91963 1.04452 1.01658 1.23719 1.02467 0.83206 0.92651 0.90120 0.89707 0.88145 0.86862 0.86974 0.92074 0.87035 0.90218 0.86300 0.92150 0.89179 0.92566 0.91897 0.88963 0.92081 0.92580 0.88849 0.91950 0.85738 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 8.92 127.77 1.14 1.95 16 2 N -0.60 -13.65 3.11 -821.40 -2.56 -16.21 16 3 C 0.54 18.68 7.69 87.66 0.67 19.35 16 4 O -0.56 -25.08 15.37 -3.04 -0.05 -25.13 16 5 C -0.12 -4.56 4.71 71.24 0.34 -4.22 16 6 S -0.16 -8.47 20.57 -56.49 -1.16 -9.63 16 7 C -0.54 -30.16 9.50 67.95 0.65 -29.52 16 8 H 0.09 4.36 7.80 -2.91 -0.02 4.34 16 9 C 0.01 0.67 5.49 84.86 0.47 1.14 16 10 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 11 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 12 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 C 0.11 2.35 4.57 45.55 0.21 2.56 16 16 C 0.09 1.69 8.17 83.18 0.68 2.36 16 17 N -0.63 -12.28 3.69 -859.80 -3.17 -15.45 16 18 C 0.50 10.78 7.80 87.16 0.68 11.46 16 19 O -0.52 -13.28 14.16 -3.32 -0.05 -13.33 16 20 C 0.37 6.77 6.03 28.60 0.17 6.95 16 21 O -0.42 -8.76 14.81 -1.52 -0.02 -8.78 16 22 C -0.09 -1.26 0.76 -52.93 -0.04 -1.30 16 23 C -0.13 -1.43 7.76 71.98 0.56 -0.87 16 24 C -0.14 -1.61 8.29 71.98 0.60 -1.01 16 25 C -0.14 -1.85 8.29 71.98 0.60 -1.25 16 26 C 0.10 1.68 7.04 83.27 0.59 2.26 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 1.15 6.44 -2.39 -0.02 1.14 16 29 H 0.10 0.76 6.18 -2.39 -0.01 0.74 16 30 H 0.11 3.71 7.40 -2.39 -0.02 3.70 16 31 H 0.11 3.71 8.11 -2.40 -0.02 3.69 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.11 3.01 7.29 -2.38 -0.02 3.00 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 1.62 6.97 -2.39 -0.02 1.61 16 36 H 0.06 0.68 8.10 -2.38 -0.02 0.67 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 39 H 0.06 0.96 6.43 -2.39 -0.02 0.95 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 1.05 6.43 -2.39 -0.02 1.04 16 45 H 0.12 1.37 6.57 -2.38 -0.02 1.35 16 46 H 0.09 1.63 7.38 -2.39 -0.02 1.61 16 Total: -1.00 -78.88 389.35 3.59 -75.28 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.99 Total: 13.75 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.30 Total: 9.86 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -5.44 Total: -86.87 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.12 Total: -47.24 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -78.88 3.59 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739299580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.259 kcal (2) G-P(sol) polarization free energy of solvation -78.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds