Wall clock time and date at job start Wed Apr 1 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 110.45841 * 2 1 4 4 O 1.21283 * 120.00395 * 239.30628 * 3 2 1 5 5 N 1.34775 * 119.99851 * 59.29977 * 3 2 1 6 6 C 1.46504 * 120.00090 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47165 * 179.97438 * 6 5 3 8 8 C 1.31001 * 119.99784 * 124.99950 * 7 6 5 9 9 C 1.50703 * 120.00232 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47138 * 125.00168 * 9 8 7 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 8 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 S 1.81005 * 109.46906 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99828 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99869 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00444 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00089 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47406 * 89.99536 * 19 17 15 21 21 H 1.48502 * 109.46978 * 209.99777 * 19 17 15 22 22 H 1.48504 * 109.47081 * 329.99606 * 19 17 15 23 23 C 1.54507 * 110.50801 * 237.39779 * 2 1 3 24 24 C 1.54805 * 103.91204 * 241.18336 * 23 2 1 25 25 O 1.44426 * 104.85198 * 336.11909 * 24 23 2 26 26 C 1.44425 * 105.27730 * 40.46446 * 25 24 23 27 27 H 1.08992 * 109.46938 * 60.69854 * 1 2 3 28 28 H 1.09006 * 109.46840 * 180.69954 * 1 2 3 29 29 H 1.09002 * 109.46480 * 300.69584 * 1 2 3 30 30 H 0.96998 * 119.99870 * 359.97438 * 5 3 2 31 31 H 1.09001 * 109.46767 * 60.00047 * 6 5 3 32 32 H 1.09000 * 109.47295 * 300.00521 * 6 5 3 33 33 H 1.07999 * 120.00296 * 304.99764 * 7 6 5 34 34 H 1.07999 * 120.00318 * 0.02562 * 8 7 6 35 35 H 1.09009 * 109.46601 * 5.00071 * 9 8 7 36 36 H 1.08998 * 109.47035 * 245.00579 * 9 8 7 37 37 H 0.97001 * 119.99790 * 359.97438 * 10 9 8 38 38 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 39 39 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 40 40 H 0.96995 * 120.00766 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.51468 * 359.85775 * 23 2 1 42 42 H 1.09004 * 110.51165 * 122.57469 * 23 2 1 43 43 H 1.09003 * 110.38572 * 217.24908 * 24 23 2 44 44 H 1.09001 * 110.39634 * 94.99558 * 24 23 2 45 45 H 1.08996 * 110.37001 * 200.65431 * 26 25 24 46 46 H 1.08996 * 110.37366 * 78.31247 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7711 1.7928 -0.9032 5 7 1.7340 2.2516 1.0036 6 6 2.2456 3.6244 1.0034 7 6 1.7411 4.3487 2.2248 8 6 2.5886 4.9207 3.0437 9 6 2.0842 5.6455 4.2649 10 7 2.7351 5.1016 5.4593 11 6 2.4326 5.5963 6.6759 12 8 1.6252 6.4951 6.7815 13 6 3.0977 5.0325 7.9051 14 16 2.4874 5.8991 9.3724 15 6 3.4028 5.0629 10.6244 16 1 4.0889 4.2734 10.3555 17 6 3.2421 5.4188 11.9563 18 7 3.9254 4.7938 12.8917 19 14 2.0548 6.7839 12.4216 20 1 0.7098 6.2063 12.6715 21 1 2.5382 7.4627 13.6507 22 1 1.9726 7.7679 11.3124 23 6 2.0713 -0.7797 -1.2191 24 6 2.8801 -1.9400 -0.5897 25 8 3.2418 -1.4678 0.7264 26 6 2.0713 -0.7797 1.2188 27 1 -0.3633 0.5029 -0.8961 28 1 -0.3633 -1.0277 0.0125 29 1 -0.3632 0.5246 0.8837 30 1 1.1623 1.9471 1.7257 31 1 1.9009 4.1403 0.1072 32 1 3.3353 3.6060 1.0156 33 1 0.6809 4.3962 2.4250 34 1 3.6488 4.8736 2.8433 35 1 1.0053 5.5125 4.3465 36 1 2.3137 6.7075 4.1777 37 1 3.3806 4.3825 5.3748 38 1 2.8673 3.9704 7.9881 39 1 4.1767 5.1654 7.8278 40 1 3.8129 5.0423 13.8225 41 1 1.2490 -1.1674 -1.8205 42 1 2.7200 -0.1440 -1.8218 43 1 3.7743 -2.1430 -1.1790 44 1 2.2639 -2.8360 -0.5154 45 1 2.3443 -0.0915 2.0187 46 1 1.3295 -1.4967 1.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747095331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:30 Heat of formation + Delta-G solvation = -138.015528 kcal Electronic energy + Delta-G solvation = -26008.822769 eV Core-core repulsion = 22023.650912 eV Total energy + Delta-G solvation = -3985.171858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73262 -40.65380 -39.49346 -37.49969 -35.95013 -34.85654 -34.66586 -33.72261 -31.31203 -30.63334 -28.55414 -27.82535 -27.35246 -25.26399 -24.12622 -22.88926 -21.90426 -21.26525 -20.29387 -19.78949 -18.45287 -17.90409 -17.43919 -17.27567 -17.06578 -17.04786 -16.71160 -16.52314 -16.08131 -15.93215 -15.68504 -15.26112 -14.99560 -14.88137 -14.76554 -14.43539 -14.07850 -13.85576 -13.77459 -13.49190 -13.33590 -13.24294 -13.21566 -12.99636 -12.66007 -12.65343 -12.46032 -12.21231 -12.02744 -11.86138 -11.66676 -11.19011 -11.16437 -11.12182 -10.72856 -10.53389 -10.47316 -10.19165 -9.97468 -8.98910 -8.50839 -6.21758 0.78420 1.04804 1.32108 1.48237 1.50493 1.56142 1.59308 2.21985 2.25281 2.37886 2.74034 2.87369 2.97388 3.29747 3.54647 3.60752 3.85471 3.89217 3.98268 4.01051 4.17560 4.23320 4.28182 4.30717 4.48505 4.51264 4.52190 4.53708 4.63661 4.66469 4.73317 4.79979 4.81835 4.87900 4.94446 5.11400 5.21213 5.29567 5.33955 5.55311 5.66630 5.71290 5.76180 6.12259 6.44041 6.46314 6.94286 7.13393 7.18363 8.61448 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.001632 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.123916 B =17148.735588 C =18191.209124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.524 3.476 4 O -0.579 6.579 5 N -0.713 5.713 6 C 0.150 3.850 7 C -0.143 4.143 8 C -0.142 4.142 9 C 0.148 3.852 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.563 6.563 13 C -0.112 4.112 14 S -0.176 6.176 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.045 3.955 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.237 1.237 23 C -0.144 4.144 24 C 0.041 3.959 25 O -0.403 6.403 26 C 0.054 3.946 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.277 0.723 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -12.072 -31.468 34.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 C 0.311 3.689 4 O -0.459 6.459 5 N -0.365 5.365 6 C 0.027 3.973 7 C -0.162 4.162 8 C -0.162 4.162 9 C 0.025 3.975 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.441 6.441 13 C -0.263 4.263 14 S 0.051 5.949 15 C -0.677 4.677 16 H 0.081 0.919 17 C -0.161 4.161 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.184 1.184 22 H -0.161 1.161 23 C -0.182 4.182 24 C -0.035 4.035 25 O -0.322 6.322 26 C -0.023 4.023 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.551 -10.349 -31.654 34.383 hybrid contribution 0.901 -0.888 0.709 1.450 sum -7.650 -11.237 -30.944 33.798 Atomic orbital electron populations 1.21861 0.88749 1.04817 1.03616 1.22226 0.99681 0.91434 0.98408 1.20719 0.79305 0.87839 0.81039 1.90672 1.39114 1.78183 1.37930 1.45876 1.52478 1.12212 1.25982 1.20309 0.98683 0.81257 0.97083 1.22889 1.00761 0.97659 0.94937 1.22862 1.00833 0.98270 0.94196 1.20388 0.97327 0.97882 0.81860 1.45723 1.45977 1.40097 1.04532 1.19940 0.81342 0.81918 0.84706 1.90696 1.35610 1.31105 1.86734 1.23278 1.04623 1.04470 0.93926 1.84703 1.59346 1.51263 0.99624 1.22468 1.28603 1.23010 0.93621 0.91941 1.25578 0.96849 0.98326 0.95320 1.70014 1.41700 1.42287 1.01485 0.85858 0.79643 0.80663 0.80147 1.18615 1.18447 1.16051 1.23129 1.01281 0.96852 0.96961 1.23665 1.00253 0.96634 0.82931 1.89144 1.36457 1.74161 1.32455 1.23715 0.88339 0.95549 0.94669 0.91784 0.89076 0.90198 0.74715 0.90714 0.91650 0.84801 0.85232 0.91031 0.91155 0.74576 0.86711 0.86872 0.91385 0.87567 0.90987 0.88963 0.89758 0.88749 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 8.19 71.98 0.59 0.04 16 2 C -0.11 -1.17 0.88 -51.91 -0.05 -1.22 16 3 C 0.52 8.40 6.48 87.66 0.57 8.97 16 4 O -0.58 -14.56 15.28 -3.04 -0.05 -14.60 16 5 N -0.71 -7.58 5.20 -466.79 -2.43 -10.00 16 6 C 0.15 1.71 6.11 85.63 0.52 2.24 16 7 C -0.14 -1.27 9.24 25.64 0.24 -1.03 16 8 C -0.14 -1.55 9.24 25.65 0.24 -1.31 16 9 C 0.15 2.54 6.11 85.63 0.52 3.07 16 10 N -0.71 -14.79 5.55 -466.78 -2.59 -17.38 16 11 C 0.54 17.27 7.85 87.66 0.69 17.96 16 12 O -0.56 -22.99 15.86 -3.04 -0.05 -23.04 16 13 C -0.11 -4.04 6.16 71.24 0.44 -3.60 16 14 S -0.18 -8.72 18.55 -56.49 -1.05 -9.76 16 15 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 16 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 17 C 0.04 2.60 5.50 84.86 0.47 3.07 16 18 N -0.92 -55.46 13.97 21.65 0.30 -55.16 16 19 Si 0.91 44.55 27.74 68.60 1.90 46.45 16 20 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 23 C -0.14 -1.66 6.34 31.72 0.20 -1.46 16 24 C 0.04 0.48 7.64 72.60 0.55 1.03 16 25 O -0.40 -6.96 11.65 -148.98 -1.74 -8.70 16 26 C 0.05 0.56 6.71 72.48 0.49 1.05 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.10 8.12 -2.38 -0.02 0.08 16 29 H 0.08 0.11 7.59 -2.39 -0.02 0.09 16 30 H 0.42 2.19 7.83 -92.71 -0.73 1.46 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 33 H 0.13 0.91 7.84 -2.91 -0.02 0.89 16 34 H 0.13 1.23 7.84 -2.91 -0.02 1.20 16 35 H 0.07 1.29 7.79 -2.38 -0.02 1.27 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.42 6.19 8.46 -92.71 -0.78 5.41 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 40 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.11 0.70 7.73 -2.39 -0.02 0.68 16 42 H 0.07 1.27 6.50 -2.39 -0.02 1.25 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 45 H 0.09 0.92 7.59 -2.39 -0.02 0.91 16 46 H 0.10 0.54 7.85 -2.39 -0.02 0.52 16 Total: -1.00 -82.04 397.53 -0.09 -82.13 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -0.55 Total: 11.08 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.15 Total: -1.01 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -4.71 Total: -82.55 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.83 Total: -46.34 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.76 kcal Total: -82.04 -0.09 -82.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747095331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.887 kcal (2) G-P(sol) polarization free energy of solvation -82.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds