Wall clock time and date at job start Wed Apr 1 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32985 * 120.00279 * 2 1 4 4 C 1.50705 * 120.00217 * 0.02562 * 3 2 1 5 5 C 1.47107 * 120.00230 * 180.02562 * 3 2 1 6 6 O 1.21607 * 119.99564 * 0.02562 * 5 3 2 7 7 N 1.34778 * 119.99937 * 179.97438 * 5 3 2 8 8 C 1.46501 * 119.99438 * 180.02562 * 7 5 3 9 9 H 1.09002 * 109.46240 * 35.00294 * 8 7 5 10 10 C 1.53046 * 109.44805 * 275.03372 * 8 7 5 11 11 C 1.53184 * 109.31411 * 301.35368 * 10 8 7 12 12 N 1.46931 * 108.77762 * 305.36562 * 11 10 8 13 13 C 1.34775 * 120.63060 * 233.63168 * 12 11 10 14 14 O 1.21282 * 119.99676 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00154 * 359.97438 * 13 12 11 16 16 S 1.80999 * 109.47410 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00529 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99499 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00482 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99712 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47286 * 59.99635 * 21 19 17 23 23 H 1.48503 * 109.46935 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46821 * 299.99454 * 21 19 17 25 25 C 1.46935 * 118.73608 * 53.60704 * 12 11 10 26 26 C 1.53046 * 109.45590 * 154.97526 * 8 7 5 27 27 H 1.08999 * 109.49048 * 178.59188 * 26 8 7 28 28 O 1.42898 * 109.49493 * 298.65351 * 26 8 7 29 29 H 1.08989 * 109.47442 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46813 * 300.00303 * 1 2 3 31 31 H 1.09000 * 109.46615 * 59.99660 * 1 2 3 32 32 H 1.07997 * 119.99201 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47239 * 270.00018 * 4 3 2 34 34 H 1.09005 * 109.46823 * 29.99951 * 4 3 2 35 35 H 1.09000 * 109.47451 * 149.99544 * 4 3 2 36 36 H 0.96988 * 120.00270 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.49658 * 61.30940 * 10 8 7 38 38 H 1.09002 * 109.49271 * 181.39977 * 10 8 7 39 39 H 1.08996 * 109.58920 * 185.58034 * 11 10 8 40 40 H 1.09004 * 109.58683 * 65.14965 * 11 10 8 41 41 H 1.09006 * 109.47031 * 299.99931 * 15 13 12 42 42 H 1.09001 * 109.47271 * 60.00034 * 15 13 12 43 43 H 0.96998 * 119.99746 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58244 * 186.60232 * 25 12 11 45 45 H 1.08994 * 109.70058 * 66.25170 * 25 12 11 46 46 H 0.96700 * 113.99696 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1516 0.0000 4 6 1.4186 2.4569 0.0006 5 6 3.6431 1.1516 -0.0006 6 8 4.2511 0.0984 -0.0015 7 7 4.3170 2.3188 -0.0011 8 6 5.7820 2.3187 -0.0022 9 1 6.1447 1.4768 -0.5920 10 6 6.2927 2.1920 1.4349 11 6 5.7529 3.3580 2.2691 12 7 6.1154 4.6195 1.6089 13 6 6.7696 5.5849 2.2845 14 8 7.0637 6.6216 1.7281 15 6 7.1358 5.3761 3.7313 16 16 7.9988 6.8406 4.3528 17 6 8.2987 6.3372 6.0144 18 1 7.9655 5.3673 6.3532 19 6 8.9623 7.1872 6.8882 20 7 9.3680 8.3694 6.4753 21 14 9.2808 6.6531 8.6496 22 1 10.1082 5.4200 8.6510 23 1 10.0009 7.7326 9.3717 24 1 7.9870 6.3819 9.3262 25 6 5.7516 4.8084 0.1978 26 6 6.2914 3.6263 -0.6131 27 1 7.3812 3.6375 -0.5913 28 8 5.8402 3.7287 -1.9650 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 2.0469 -0.9354 -0.0004 33 1 1.2366 2.7718 -1.0269 34 1 0.4664 2.3264 0.5148 35 1 2.0079 3.2164 0.5144 36 1 3.8321 3.1588 -0.0007 37 1 5.9489 1.2497 1.8614 38 1 7.3824 2.2169 1.4373 39 1 6.1921 3.3281 3.2662 40 1 4.6679 3.2829 2.3429 41 1 6.2300 5.2134 4.3155 42 1 7.7862 4.5059 3.8196 43 1 9.8321 8.9634 7.0859 44 1 6.1900 5.7355 -0.1715 45 1 4.6669 4.8531 0.1009 46 1 6.1264 4.5353 -2.4151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757564673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:34 Heat of formation + Delta-G solvation = -134.151310 kcal Electronic energy + Delta-G solvation = -27911.998648 eV Core-core repulsion = 23926.994356 eV Total energy + Delta-G solvation = -3985.004293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85070 -40.64239 -39.07975 -36.96887 -36.44600 -35.41552 -34.58245 -32.47151 -32.04461 -30.28036 -29.58686 -27.68447 -27.09705 -26.25200 -24.31437 -23.34974 -21.64790 -20.20899 -19.85647 -19.47203 -18.42712 -18.21525 -17.89227 -17.28051 -17.09376 -16.87339 -16.65169 -16.16106 -15.94207 -15.65623 -15.50098 -14.95049 -14.72711 -14.50134 -14.42782 -14.34389 -14.18637 -13.91478 -13.44360 -13.40006 -13.35958 -13.22422 -13.13848 -12.87290 -12.86609 -12.66961 -12.65883 -12.49007 -12.15499 -11.80050 -11.69946 -11.41610 -11.12852 -10.94165 -10.91694 -10.29491 -10.23993 -9.90637 -9.73331 -8.66777 -8.34546 -6.12451 0.41020 1.23321 1.43760 1.44256 1.50852 1.54327 1.96745 2.15531 2.27283 2.28012 2.98936 2.99722 3.21782 3.51481 3.61271 3.74047 3.79530 3.87836 3.95462 4.00861 4.05814 4.24547 4.29712 4.34029 4.42963 4.46203 4.50809 4.62384 4.69177 4.72538 4.74716 4.84825 4.88036 4.92068 4.99176 5.07617 5.16939 5.38112 5.41042 5.41983 5.52990 5.65822 6.14605 6.19953 6.51378 6.70643 7.06167 7.07120 7.20508 8.74227 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002418 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.702187 B =11576.032415 C =12470.210024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.206 4.206 4 C -0.114 4.114 5 C 0.550 3.450 6 O -0.589 6.589 7 N -0.701 5.701 8 C 0.157 3.843 9 H 0.082 0.918 10 C -0.138 4.138 11 C 0.105 3.895 12 N -0.601 5.601 13 C 0.539 3.461 14 O -0.559 6.559 15 C -0.127 4.127 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.996 3.004 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.262 1.262 25 C 0.082 3.918 26 C 0.098 3.902 27 H 0.075 0.925 28 O -0.563 6.563 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.797 -15.818 -14.763 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.209 4.209 4 C -0.171 4.171 5 C 0.340 3.660 6 O -0.471 6.471 7 N -0.353 5.353 8 C 0.051 3.949 9 H 0.100 0.900 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.336 5.336 13 C 0.327 3.673 14 O -0.437 6.437 15 C -0.278 4.278 16 S 0.080 5.920 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.041 4.041 26 C 0.038 3.962 27 H 0.093 0.907 28 O -0.371 6.371 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.114 -15.402 -15.442 27.723 hybrid contribution 0.457 -0.294 1.416 1.517 sum -16.656 -15.696 -14.026 26.842 Atomic orbital electron populations 1.21045 0.89681 1.04047 1.03646 1.23765 0.97987 0.97016 0.90295 1.21502 0.91228 0.98397 1.09793 1.20856 1.00473 0.92405 1.03351 1.18875 0.88949 0.83213 0.74946 1.90754 1.71130 1.32645 1.52580 1.45821 1.06404 1.08887 1.74221 1.20830 0.80588 0.97344 0.96093 0.90038 1.22252 1.02274 0.99014 0.94169 1.21934 1.01495 0.81139 0.97117 1.47939 1.57408 1.16813 1.11487 1.20071 0.76472 0.82906 0.87861 1.90686 1.54556 1.28318 1.70120 1.23394 1.04835 1.04118 0.95436 1.85546 1.73423 1.21188 1.11886 1.23154 1.43923 1.05847 0.96460 0.89937 1.26096 0.94315 0.94405 1.04237 1.70169 1.37470 1.09155 1.37877 0.85037 0.78911 0.78122 0.76150 1.18746 1.20466 1.18642 1.22339 1.01436 0.99864 0.80440 1.22188 0.98413 0.93209 0.82420 0.90696 1.86522 1.78910 1.47976 1.23695 0.90620 0.89363 0.89543 0.87454 0.90064 0.89310 0.91585 0.75241 0.89229 0.89554 0.88473 0.89509 0.87357 0.87381 0.92005 0.89236 0.89262 0.74924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.91 71.24 0.63 -0.28 16 2 C -0.07 -1.00 9.84 24.52 0.24 -0.76 16 3 C -0.21 -3.18 6.00 -18.70 -0.11 -3.29 16 4 C -0.11 -1.04 9.14 71.24 0.65 -0.39 16 5 C 0.55 11.69 7.71 86.57 0.67 12.36 16 6 O -0.59 -17.11 15.88 -4.05 -0.06 -17.18 16 7 N -0.70 -12.06 4.10 -445.99 -1.83 -13.88 16 8 C 0.16 2.94 2.47 45.02 0.11 3.05 16 9 H 0.08 1.86 7.58 -2.39 -0.02 1.85 16 10 C -0.14 -2.48 5.77 30.67 0.18 -2.30 16 11 C 0.11 1.97 6.08 86.36 0.53 2.50 16 12 N -0.60 -14.37 2.97 -818.92 -2.43 -16.80 16 13 C 0.54 18.82 7.72 87.66 0.68 19.50 16 14 O -0.56 -24.30 15.28 -3.04 -0.05 -24.34 16 15 C -0.13 -4.83 4.50 71.23 0.32 -4.51 16 16 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 17 C -0.55 -30.55 9.50 67.95 0.65 -29.91 16 18 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 21 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.08 1.58 5.76 86.36 0.50 2.08 16 26 C 0.10 1.68 3.36 30.67 0.10 1.79 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 O -0.56 -8.71 13.21 -148.98 -1.97 -10.68 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.47 7.40 -2.39 -0.02 0.45 16 31 H 0.09 0.46 8.10 -2.39 -0.02 0.44 16 32 H 0.11 1.90 7.49 -2.91 -0.02 1.88 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.55 6.49 -2.38 -0.02 0.53 16 35 H 0.07 0.55 6.70 -2.39 -0.02 0.53 16 36 H 0.41 5.58 4.97 -92.72 -0.46 5.11 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.85 5.93 -2.39 -0.01 1.84 16 40 H 0.09 1.38 7.74 -2.38 -0.02 1.36 16 41 H 0.11 3.73 7.94 -2.39 -0.02 3.71 16 42 H 0.11 3.73 7.69 -2.39 -0.02 3.72 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.09 2.02 7.00 -2.39 -0.02 2.00 16 45 H 0.09 1.36 6.64 -2.39 -0.02 1.34 16 46 H 0.40 3.23 9.08 -74.06 -0.67 2.55 16 Total: -1.00 -80.66 385.95 0.30 -80.36 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.11 Total: 20.48 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.61 Total: 1.10 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.98 Total: -85.58 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.08 Total: -52.20 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -80.66 0.30 -80.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757564673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.793 kcal (2) G-P(sol) polarization free energy of solvation -80.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds