Wall clock time and date at job start Wed Apr 1 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 119.99445 * 2 1 4 4 C 1.50703 * 120.00606 * 0.02562 * 3 2 1 5 5 C 1.47106 * 119.99879 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99959 * 0.02562 * 5 3 2 7 7 N 1.34777 * 120.00199 * 180.02562 * 5 3 2 8 8 C 1.46496 * 119.99875 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.46131 * 35.00995 * 8 7 5 10 10 C 1.53037 * 109.46296 * 275.03209 * 8 7 5 11 11 C 1.53197 * 109.31323 * 178.61523 * 10 8 7 12 12 N 1.46933 * 108.77345 * 54.63478 * 11 10 8 13 13 C 1.34774 * 120.63012 * 126.37017 * 12 11 10 14 14 O 1.21282 * 120.00152 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00086 * 359.97438 * 13 12 11 16 16 S 1.80999 * 109.47401 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00287 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00097 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00007 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00150 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47053 * 90.00201 * 21 19 17 23 23 H 1.48494 * 109.47606 * 210.00545 * 21 19 17 24 24 H 1.48507 * 109.47056 * 330.00503 * 21 19 17 25 25 C 1.46920 * 118.73893 * 306.39064 * 12 11 10 26 26 C 1.53044 * 109.46076 * 154.97317 * 8 7 5 27 27 H 1.09009 * 109.49126 * 61.43451 * 26 8 7 28 28 O 1.42901 * 109.50012 * 301.34469 * 26 8 7 29 29 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99717 * 1 2 3 31 31 H 1.09001 * 109.46740 * 59.99860 * 1 2 3 32 32 H 1.07995 * 120.00167 * 179.72471 * 2 1 3 33 33 H 1.08991 * 109.47460 * 89.98979 * 4 3 2 34 34 H 1.08999 * 109.46927 * 210.00031 * 4 3 2 35 35 H 1.09005 * 109.46730 * 329.99595 * 4 3 2 36 36 H 0.96999 * 120.00043 * 0.02562 * 7 5 3 37 37 H 1.09001 * 109.49797 * 298.56457 * 10 8 7 38 38 H 1.08999 * 109.49879 * 58.63123 * 10 8 7 39 39 H 1.08998 * 109.58655 * 174.41617 * 11 10 8 40 40 H 1.08990 * 109.58591 * 294.70474 * 11 10 8 41 41 H 1.09000 * 109.47143 * 300.00295 * 15 13 12 42 42 H 1.09001 * 109.47174 * 59.99962 * 15 13 12 43 43 H 0.97004 * 119.99611 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58758 * 173.39887 * 25 12 11 45 45 H 1.09009 * 109.58679 * 293.68144 * 25 12 11 46 46 H 0.96698 * 114.00079 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1519 0.0006 6 8 4.2511 0.0987 0.0006 7 7 4.3168 2.3191 0.0011 8 6 5.7818 2.3192 0.0011 9 1 6.1449 1.4777 -0.5889 10 6 6.2917 2.1920 1.4384 11 6 7.8232 2.1575 1.4315 12 7 8.3196 3.3420 0.7176 13 6 9.2132 4.1683 1.2966 14 8 9.6156 5.1425 0.6968 15 6 9.7122 3.8817 2.6894 16 16 10.8916 5.1628 3.1833 17 6 11.3012 4.5947 4.8001 18 1 10.8460 3.6954 5.1880 19 6 12.2082 5.3035 5.5757 20 7 12.5147 4.8788 6.7834 21 14 12.9951 6.8593 4.9052 22 1 12.1548 8.0313 5.2597 23 1 14.3479 7.0237 5.4949 24 1 13.1079 6.7599 3.4277 25 6 7.8231 3.6087 -0.6391 26 6 6.2916 3.6270 -0.6088 27 1 5.9495 4.4676 -0.0049 28 8 5.7898 3.7599 -1.9402 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.0471 -0.9352 0.0045 33 1 1.2370 2.7713 1.0283 34 1 2.0073 3.2167 -0.5133 35 1 0.4658 2.3267 -0.5130 36 1 3.8318 3.1592 0.0015 37 1 5.9497 3.0462 2.0227 38 1 5.9086 1.2721 1.8803 39 1 8.1936 2.1669 2.4566 40 1 8.1661 1.2541 0.9273 41 1 8.8711 3.8759 3.3827 42 1 10.2037 2.9089 2.7063 43 1 13.1488 5.3740 7.3252 44 1 8.1933 4.5755 -0.9803 45 1 8.1681 2.8261 -1.3150 46 1 6.0735 4.5684 -2.3885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757564675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:43 Heat of formation + Delta-G solvation = -109.572591 kcal Electronic energy + Delta-G solvation = -27471.085000 eV Core-core repulsion = 23487.146520 eV Total energy + Delta-G solvation = -3983.938479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74681 -39.73474 -38.08507 -36.12083 -35.81993 -34.77555 -32.46667 -31.59333 -30.99236 -29.65306 -28.58649 -26.63325 -25.67680 -25.07596 -23.50520 -22.03514 -21.15549 -19.61407 -18.71851 -17.93599 -17.53735 -17.36710 -17.03061 -16.41075 -15.96202 -15.64430 -15.16956 -14.99986 -14.97006 -14.60539 -14.11467 -13.96013 -13.87697 -13.71406 -13.45007 -13.32783 -13.10258 -13.01429 -12.82842 -12.80878 -12.55731 -12.29923 -12.11388 -11.97799 -11.69004 -11.63424 -11.28523 -11.03752 -10.97541 -10.63353 -10.58955 -10.13785 -9.89139 -9.60102 -9.50251 -9.27072 -9.03398 -8.75090 -8.53459 -6.96110 -6.31558 -4.03950 1.03324 2.58331 2.74907 2.91002 3.00473 3.08694 3.30347 3.47617 3.52519 3.69235 4.27163 4.30578 4.37791 4.49632 4.51345 4.63114 4.63743 4.75441 4.78507 4.83347 4.87220 5.04577 5.05295 5.07462 5.11186 5.20619 5.25568 5.35202 5.41676 5.45509 5.50721 5.53609 5.54977 5.68901 5.69561 5.87615 5.93771 6.02397 6.11620 6.19717 6.35862 7.19561 7.23577 7.30885 7.91358 7.97098 8.30650 8.38928 9.14392 10.77559 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.002170 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.188742 B =12897.338148 C =13626.896951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.192 4.192 4 C -0.118 4.118 5 C 0.556 3.444 6 O -0.545 6.545 7 N -0.713 5.713 8 C 0.156 3.844 9 H 0.097 0.903 10 C -0.144 4.144 11 C 0.108 3.892 12 N -0.617 5.617 13 C 0.536 3.464 14 O -0.518 6.518 15 C -0.123 4.123 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.089 0.911 19 C 0.095 3.905 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.087 3.913 26 C 0.086 3.914 27 H 0.067 0.933 28 O -0.557 6.557 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.021 -6.434 -15.845 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.195 4.195 4 C -0.175 4.175 5 C 0.344 3.656 6 O -0.424 6.424 7 N -0.364 5.364 8 C 0.051 3.949 9 H 0.115 0.885 10 C -0.183 4.183 11 C -0.016 4.016 12 N -0.354 5.354 13 C 0.324 3.676 14 O -0.392 6.392 15 C -0.273 4.273 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.037 4.037 26 C 0.026 3.974 27 H 0.085 0.915 28 O -0.362 6.362 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -23.146 -6.264 -16.428 29.067 hybrid contribution 0.035 0.404 0.642 0.759 sum -23.111 -5.860 -15.786 28.595 Atomic orbital electron populations 1.21000 0.92082 1.03130 1.02601 1.23588 0.96292 0.97964 0.91510 1.21409 0.92617 0.96852 1.08637 1.20829 1.00139 0.94014 1.02536 1.18385 0.87776 0.83597 0.75793 1.90789 1.70071 1.31207 1.50323 1.45821 1.06642 1.08810 1.75122 1.20939 0.79888 0.97834 0.96275 0.88467 1.22347 0.95771 1.04132 0.96083 1.21779 0.93037 0.87886 0.98884 1.48040 1.44684 1.26869 1.15853 1.20350 0.77704 0.81774 0.87766 1.90690 1.56409 1.27617 1.64484 1.23320 1.03647 1.05354 0.94966 1.84789 1.52365 1.34038 1.20399 1.22297 1.31206 1.15263 0.98133 0.89341 1.24716 0.95055 0.97521 0.94036 1.69942 1.33269 1.39514 1.08834 0.86733 0.79510 0.83483 0.82103 1.19225 1.19913 1.15946 1.22188 0.92702 1.04222 0.84635 1.22409 0.93315 0.97409 0.84311 0.91541 1.86547 1.75137 1.47349 1.27211 0.91354 0.90684 0.90637 0.85579 0.90884 0.91721 0.90876 0.76328 0.90671 0.89145 0.88283 0.90624 0.88407 0.88297 0.91916 0.88142 0.90554 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 8.91 36.01 0.32 -0.26 16 2 C -0.07 -0.55 9.84 -36.12 -0.36 -0.90 16 3 C -0.19 -1.55 6.00 -102.84 -0.62 -2.17 16 4 C -0.12 -0.61 9.14 36.01 0.33 -0.28 16 5 C 0.56 6.04 7.71 -12.66 -0.10 5.95 16 6 O -0.55 -7.85 15.88 5.26 0.08 -7.77 16 7 N -0.71 -6.47 4.86 -54.95 -0.27 -6.74 16 8 C 0.16 1.53 2.12 -67.89 -0.14 1.38 16 9 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 10 C -0.14 -1.38 5.65 -26.61 -0.15 -1.53 16 11 C 0.11 1.13 6.34 -3.70 -0.02 1.11 16 12 N -0.62 -7.90 2.97 -172.77 -0.51 -8.41 16 13 C 0.54 9.26 7.72 -10.99 -0.08 9.18 16 14 O -0.52 -10.70 15.27 5.56 0.08 -10.62 16 15 C -0.12 -2.31 4.50 36.00 0.16 -2.15 16 16 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 17 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 20 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 21 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 25 C 0.09 0.93 6.06 -3.72 -0.02 0.91 16 26 C 0.09 0.77 3.14 -26.61 -0.08 0.69 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 28 O -0.56 -4.59 13.16 -35.23 -0.46 -5.05 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.08 0.27 7.40 -51.93 -0.38 -0.11 16 32 H 0.13 1.08 7.49 -52.49 -0.39 0.69 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.30 6.71 -51.93 -0.35 -0.04 16 35 H 0.07 0.29 6.49 -51.93 -0.34 -0.04 16 36 H 0.40 2.84 6.70 -40.82 -0.27 2.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.05 5.93 -51.93 -0.31 0.74 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.71 7.69 -51.92 -0.40 1.31 16 42 H 0.10 1.75 7.94 -51.92 -0.41 1.34 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.10 1.17 7.01 -51.93 -0.36 0.80 16 45 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 46 H 0.38 1.74 9.08 45.56 0.41 2.15 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -36.28 387.49 -7.88 -44.16 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.16 Total: 2.71 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.55 Total: 0.09 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.01 Total: -40.66 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.30 Total: -23.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.28 -7.88 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757564675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.417 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds