Wall clock time and date at job start Wed Apr 1 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 119.99445 * 2 1 4 4 C 1.50703 * 120.00606 * 0.02562 * 3 2 1 5 5 C 1.47106 * 119.99879 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99959 * 0.02562 * 5 3 2 7 7 N 1.34777 * 120.00199 * 180.02562 * 5 3 2 8 8 C 1.46496 * 119.99875 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.46131 * 35.00995 * 8 7 5 10 10 C 1.53037 * 109.46296 * 275.03209 * 8 7 5 11 11 C 1.53197 * 109.31323 * 178.61523 * 10 8 7 12 12 N 1.46933 * 108.77345 * 54.63478 * 11 10 8 13 13 C 1.34774 * 120.63012 * 126.37017 * 12 11 10 14 14 O 1.21282 * 120.00152 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00086 * 359.97438 * 13 12 11 16 16 S 1.80999 * 109.47401 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00287 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00097 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00007 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00150 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47053 * 90.00201 * 21 19 17 23 23 H 1.48494 * 109.47606 * 210.00545 * 21 19 17 24 24 H 1.48507 * 109.47056 * 330.00503 * 21 19 17 25 25 C 1.46920 * 118.73893 * 306.39064 * 12 11 10 26 26 C 1.53044 * 109.46076 * 154.97317 * 8 7 5 27 27 H 1.09009 * 109.49126 * 61.43451 * 26 8 7 28 28 O 1.42901 * 109.50012 * 301.34469 * 26 8 7 29 29 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99717 * 1 2 3 31 31 H 1.09001 * 109.46740 * 59.99860 * 1 2 3 32 32 H 1.07995 * 120.00167 * 179.72471 * 2 1 3 33 33 H 1.08991 * 109.47460 * 89.98979 * 4 3 2 34 34 H 1.08999 * 109.46927 * 210.00031 * 4 3 2 35 35 H 1.09005 * 109.46730 * 329.99595 * 4 3 2 36 36 H 0.96999 * 120.00043 * 0.02562 * 7 5 3 37 37 H 1.09001 * 109.49797 * 298.56457 * 10 8 7 38 38 H 1.08999 * 109.49879 * 58.63123 * 10 8 7 39 39 H 1.08998 * 109.58655 * 174.41617 * 11 10 8 40 40 H 1.08990 * 109.58591 * 294.70474 * 11 10 8 41 41 H 1.09000 * 109.47143 * 300.00295 * 15 13 12 42 42 H 1.09001 * 109.47174 * 59.99962 * 15 13 12 43 43 H 0.97004 * 119.99611 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58758 * 173.39887 * 25 12 11 45 45 H 1.09009 * 109.58679 * 293.68144 * 25 12 11 46 46 H 0.96698 * 114.00079 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1519 0.0006 6 8 4.2511 0.0987 0.0006 7 7 4.3168 2.3191 0.0011 8 6 5.7818 2.3192 0.0011 9 1 6.1449 1.4777 -0.5889 10 6 6.2917 2.1920 1.4384 11 6 7.8232 2.1575 1.4315 12 7 8.3196 3.3420 0.7176 13 6 9.2132 4.1683 1.2966 14 8 9.6156 5.1425 0.6968 15 6 9.7122 3.8817 2.6894 16 16 10.8916 5.1628 3.1833 17 6 11.3012 4.5947 4.8001 18 1 10.8460 3.6954 5.1880 19 6 12.2082 5.3035 5.5757 20 7 12.5147 4.8788 6.7834 21 14 12.9951 6.8593 4.9052 22 1 12.1548 8.0313 5.2597 23 1 14.3479 7.0237 5.4949 24 1 13.1079 6.7599 3.4277 25 6 7.8231 3.6087 -0.6391 26 6 6.2916 3.6270 -0.6088 27 1 5.9495 4.4676 -0.0049 28 8 5.7898 3.7599 -1.9402 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.0471 -0.9352 0.0045 33 1 1.2370 2.7713 1.0283 34 1 2.0073 3.2167 -0.5133 35 1 0.4658 2.3267 -0.5130 36 1 3.8318 3.1592 0.0015 37 1 5.9497 3.0462 2.0227 38 1 5.9086 1.2721 1.8803 39 1 8.1936 2.1669 2.4566 40 1 8.1661 1.2541 0.9273 41 1 8.8711 3.8759 3.3827 42 1 10.2037 2.9089 2.7063 43 1 13.1488 5.3740 7.3252 44 1 8.1933 4.5755 -0.9803 45 1 8.1681 2.8261 -1.3150 46 1 6.0735 4.5684 -2.3885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757564675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:42 Heat of formation + Delta-G solvation = -137.338753 kcal Electronic energy + Delta-G solvation = -27472.289031 eV Core-core repulsion = 23487.146520 eV Total energy + Delta-G solvation = -3985.142510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69169 -40.75955 -39.08303 -36.95669 -36.46256 -35.70088 -34.67120 -32.55164 -32.03501 -30.33297 -29.59531 -27.86343 -27.14868 -26.00832 -24.37215 -22.85107 -22.02164 -20.76898 -19.77811 -19.36975 -18.46397 -18.28619 -17.93184 -17.38569 -17.20718 -16.98723 -16.76144 -16.06872 -15.88653 -15.66569 -15.35042 -15.02419 -14.83051 -14.70470 -14.48327 -14.29446 -14.27453 -13.86108 -13.53883 -13.40817 -13.35930 -13.34533 -13.27056 -13.01538 -12.92078 -12.76972 -12.71845 -12.41337 -12.16718 -11.88845 -11.77191 -11.34270 -11.17129 -11.04857 -10.94006 -10.53746 -10.25013 -9.89416 -9.83746 -9.00487 -8.51427 -6.22597 0.39451 0.95462 1.31346 1.43640 1.44310 1.52245 1.93100 2.12483 2.24720 2.25204 2.66309 2.86758 2.97417 3.40127 3.64718 3.71159 3.76760 3.85901 3.95103 4.00651 4.08223 4.16756 4.27846 4.32813 4.38845 4.45772 4.48886 4.59607 4.64379 4.71236 4.74831 4.81734 4.86403 4.90917 5.06526 5.07206 5.16897 5.34039 5.37471 5.51674 5.65688 5.70709 6.10170 6.11943 6.51869 6.71134 6.93503 6.98679 7.19764 8.60806 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.002170 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.188742 B =12897.338148 C =13626.896951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.206 4.206 4 C -0.114 4.114 5 C 0.547 3.453 6 O -0.590 6.590 7 N -0.702 5.702 8 C 0.155 3.845 9 H 0.078 0.922 10 C -0.134 4.134 11 C 0.104 3.896 12 N -0.602 5.602 13 C 0.540 3.460 14 O -0.556 6.556 15 C -0.110 4.110 16 S -0.173 6.173 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.236 1.236 25 C 0.085 3.915 26 C 0.102 3.898 27 H 0.075 0.925 28 O -0.563 6.563 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.002 -5.700 -17.122 31.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C -0.209 4.209 4 C -0.170 4.170 5 C 0.338 3.662 6 O -0.472 6.472 7 N -0.353 5.353 8 C 0.050 3.950 9 H 0.096 0.904 10 C -0.174 4.174 11 C -0.019 4.019 12 N -0.338 5.338 13 C 0.328 3.672 14 O -0.434 6.434 15 C -0.260 4.260 16 S 0.054 5.946 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.185 1.185 24 H -0.160 1.160 25 C -0.038 4.038 26 C 0.041 3.959 27 H 0.093 0.907 28 O -0.371 6.371 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -25.169 -5.525 -17.723 31.275 hybrid contribution 0.525 0.001 0.961 1.095 sum -24.644 -5.524 -16.763 30.312 Atomic orbital electron populations 1.21044 0.89553 1.04057 1.03697 1.23782 0.98085 0.97015 0.90380 1.21525 0.91117 0.98561 1.09717 1.20860 1.00438 0.92314 1.03415 1.18937 0.89077 0.83239 0.74967 1.90761 1.71166 1.32722 1.52585 1.45730 1.06344 1.09015 1.74213 1.20867 0.80428 0.97627 0.96074 0.90399 1.22236 0.94835 1.04207 0.96094 1.21967 0.93724 0.87301 0.98915 1.47960 1.43003 1.26288 1.16504 1.19974 0.78378 0.81911 0.86958 1.90679 1.58212 1.29410 1.65111 1.23306 1.02611 1.03460 0.96665 1.84678 1.54822 1.36956 1.18131 1.22449 1.30849 1.14375 0.99934 0.91920 1.25575 0.95674 1.00511 0.94323 1.70023 1.34260 1.41081 1.10058 0.85861 0.79229 0.79860 0.81386 1.18599 1.18474 1.16028 1.22357 0.93989 1.04204 0.83237 1.22156 0.91705 0.97034 0.84977 0.90725 1.86527 1.74982 1.48800 1.26789 0.90675 0.89472 0.89261 0.87626 0.89977 0.91249 0.89323 0.74951 0.90074 0.89489 0.88130 0.89324 0.86780 0.87020 0.91389 0.88728 0.89717 0.74859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.91 71.24 0.63 -0.20 16 2 C -0.07 -1.01 9.84 24.52 0.24 -0.77 16 3 C -0.21 -3.08 6.00 -18.70 -0.11 -3.20 16 4 C -0.11 -0.88 9.14 71.24 0.65 -0.23 16 5 C 0.55 11.63 7.71 86.57 0.67 12.30 16 6 O -0.59 -17.34 15.88 -4.08 -0.06 -17.40 16 7 N -0.70 -11.78 4.86 -446.01 -2.17 -13.95 16 8 C 0.16 2.84 2.12 45.02 0.10 2.93 16 9 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 10 C -0.13 -2.39 5.65 30.67 0.17 -2.22 16 11 C 0.10 2.01 6.34 86.36 0.55 2.56 16 12 N -0.60 -14.42 2.97 -818.90 -2.43 -16.86 16 13 C 0.54 18.01 7.72 87.66 0.68 18.69 16 14 O -0.56 -22.57 15.27 -3.04 -0.05 -22.61 16 15 C -0.11 -4.04 4.50 71.24 0.32 -3.72 16 16 S -0.17 -8.54 18.55 -56.49 -1.05 -9.59 16 17 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16 18 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 19 C 0.04 2.59 5.50 84.86 0.47 3.06 16 20 N -0.92 -55.38 13.97 21.65 0.30 -55.08 16 21 Si 0.91 44.47 27.74 68.60 1.90 46.37 16 22 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 25 C 0.09 1.68 6.06 86.36 0.52 2.21 16 26 C 0.10 1.62 3.14 30.67 0.10 1.71 16 27 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 28 O -0.56 -7.96 13.16 -148.98 -1.96 -9.92 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.41 8.10 -2.39 -0.02 0.39 16 31 H 0.09 0.38 7.40 -2.39 -0.02 0.36 16 32 H 0.11 1.88 7.49 -2.91 -0.02 1.86 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.47 6.71 -2.39 -0.02 0.45 16 35 H 0.09 0.42 6.49 -2.38 -0.02 0.41 16 36 H 0.41 4.96 6.70 -92.71 -0.62 4.34 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 1.95 5.93 -2.39 -0.01 1.94 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 3.83 7.69 -2.40 -0.02 3.81 16 42 H 0.11 3.83 7.94 -2.39 -0.02 3.81 16 43 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.09 2.05 7.01 -2.39 -0.02 2.03 16 45 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.40 2.61 9.08 -74.06 -0.67 1.94 16 Total: -1.00 -79.41 387.49 -0.17 -79.58 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.32 Total: 16.00 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.66 Total: 3.45 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.30 Total: -85.89 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.07 Total: -49.93 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.59 kcal Total: -79.41 -0.17 -79.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757564675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.761 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds