Wall clock time and date at job start Wed Apr 1 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 O 1.42898 * 109.47074 * 179.97438 * 3 2 1 5 5 C 1.35902 * 116.99961 * 179.97438 * 4 3 2 6 6 C 1.38759 * 120.05560 * 359.72424 * 5 4 3 7 7 C 1.38122 * 119.94093 * 179.70081 * 6 5 4 8 8 C 1.38286 * 120.05894 * 0.59686 * 7 6 5 9 9 C 1.38246 * 120.11020 * 359.68218 * 8 7 6 10 10 C 1.50693 * 119.97102 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47004 * 270.02105 * 10 9 8 12 12 C 1.36932 * 120.00390 * 85.00413 * 11 10 9 13 13 H 1.08004 * 119.99514 * 298.78825 * 12 11 10 14 14 C 1.38807 * 120.00699 * 118.78089 * 12 11 10 15 15 N 1.31622 * 120.00218 * 157.83428 * 14 12 11 16 16 Si 1.86799 * 119.99900 * 337.83572 * 14 12 11 17 17 H 1.48499 * 109.47155 * 95.13005 * 16 14 12 18 18 H 1.48502 * 109.47424 * 215.12870 * 16 14 12 19 19 H 1.48503 * 109.47203 * 335.13191 * 16 14 12 20 20 S 1.65602 * 120.00142 * 264.99750 * 11 10 9 21 21 O 1.42094 * 106.40449 * 209.50784 * 20 11 10 22 22 O 1.42103 * 106.40090 * 342.43119 * 20 11 10 23 23 N 1.65606 * 107.21722 * 95.96501 * 20 11 10 24 24 C 1.46499 * 119.99431 * 81.44333 * 23 20 11 25 25 C 1.46494 * 119.99965 * 261.44257 * 23 20 11 26 26 C 1.38164 * 120.05276 * 0.02562 * 9 8 7 27 27 H 1.09004 * 109.46868 * 300.00203 * 1 2 3 28 28 H 1.08992 * 109.46880 * 60.00209 * 1 2 3 29 29 H 1.09004 * 109.46718 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47254 * 239.99423 * 2 1 3 31 31 H 1.09001 * 109.47074 * 119.99812 * 2 1 3 32 32 H 1.08992 * 109.47034 * 60.00097 * 3 2 1 33 33 H 1.09001 * 109.46931 * 299.99899 * 3 2 1 34 34 H 1.08004 * 120.02611 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.96560 * 180.29698 * 7 6 5 36 36 H 1.08000 * 119.94321 * 179.70055 * 8 7 6 37 37 H 1.09004 * 109.47125 * 30.02051 * 10 9 8 38 38 H 1.08998 * 109.47286 * 150.02131 * 10 9 8 39 39 H 0.96998 * 119.99589 * 180.02562 * 15 14 12 40 40 H 1.08992 * 109.46876 * 94.45246 * 24 23 20 41 41 H 1.09006 * 109.46675 * 214.45273 * 24 23 20 42 42 H 1.08999 * 109.47444 * 334.44893 * 24 23 20 43 43 H 1.09005 * 109.47301 * 90.00123 * 25 23 20 44 44 H 1.09005 * 109.47122 * 209.99468 * 25 23 20 45 45 H 1.08999 * 109.47464 * 329.99998 * 25 23 20 46 46 H 1.08006 * 120.02608 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3315 3.8178 -0.0067 7 6 3.9610 5.0472 -0.0009 8 6 5.3420 5.1183 -0.0008 9 6 6.0961 3.9596 0.0002 10 6 7.6008 4.0406 -0.0003 11 7 8.0880 4.0661 -1.3817 12 6 8.1549 5.2523 -2.0624 13 1 7.2560 5.8235 -2.2416 14 6 9.3780 5.7208 -2.5221 15 7 9.4212 6.5837 -3.5151 16 14 10.9627 5.1267 -1.7315 17 1 11.5092 3.9882 -2.5127 18 1 11.9520 6.2340 -1.7125 19 1 10.6869 4.6854 -0.3406 20 16 8.5580 2.6602 -2.1200 21 8 9.5596 3.0173 -3.0625 22 8 8.7698 1.7132 -1.0819 23 7 7.2650 2.1111 -2.9970 24 6 6.9878 2.6713 -4.3220 25 6 6.3985 1.0653 -2.4479 26 6 5.4711 2.7273 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2528 3.7628 -0.0120 35 1 3.3740 5.9538 -0.0013 36 1 5.8323 6.0806 -0.0011 37 1 7.9159 4.9492 0.5129 38 1 8.0117 3.1718 0.5139 39 1 10.2760 6.9108 -3.8365 40 1 7.4502 2.0453 -5.0851 41 1 5.9104 2.7055 -4.4838 42 1 7.3965 3.6800 -4.3828 43 1 5.5874 1.5249 -1.8830 44 1 5.9831 0.4726 -3.2630 45 1 6.9801 0.4203 -1.7892 46 1 6.0607 1.8224 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:56 Heat of formation + Delta-G solvation = -96.711739 kcal Electronic energy + Delta-G solvation = -29777.564916 eV Core-core repulsion = 25794.184125 eV Total energy + Delta-G solvation = -3983.380791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.10366 -38.98832 -38.16189 -37.09384 -36.84212 -36.63952 -34.77405 -34.17931 -32.14639 -30.88467 -28.86179 -27.91706 -27.17750 -25.50487 -25.14934 -23.36917 -22.78135 -21.60579 -20.79684 -19.63610 -18.78776 -18.25855 -17.58388 -17.34392 -17.17193 -16.98654 -16.75011 -16.63349 -15.66797 -15.45211 -15.31627 -15.01859 -14.96007 -14.74035 -14.49751 -14.21908 -14.20194 -13.62654 -13.52933 -13.46115 -13.35875 -13.15833 -13.05498 -13.02200 -12.90360 -12.66407 -12.48863 -12.42259 -12.24418 -12.18963 -12.10356 -12.05073 -11.68736 -11.59548 -11.45098 -10.82083 -9.88999 -9.84726 -9.61664 -9.02732 -8.53630 -6.32291 -0.14128 0.44227 0.60071 1.27270 1.34049 1.48126 2.15136 2.27533 2.36269 2.70983 2.83462 3.01845 3.64846 3.87155 3.93514 4.00422 4.01426 4.09709 4.15723 4.30295 4.37257 4.46949 4.50645 4.54594 4.55813 4.60078 4.64480 4.76973 4.80950 4.85732 4.88282 4.90984 4.97088 5.09615 5.14271 5.15945 5.22313 5.30116 5.37311 5.41985 5.58434 5.69970 5.83133 5.91053 5.92973 6.23771 6.56491 7.04518 7.20226 8.53930 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.004094 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.113225 B = 6837.568686 C = 7541.267713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.052 3.948 4 O -0.331 6.331 5 C 0.121 3.879 6 C -0.207 4.207 7 C -0.081 4.081 8 C -0.139 4.139 9 C -0.062 4.062 10 C 0.145 3.855 11 N -0.853 5.853 12 C -0.292 4.292 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.865 5.865 16 Si 0.860 3.140 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.250 1.250 20 S 2.700 3.300 21 O -1.004 7.004 22 O -1.029 7.029 23 N -1.013 6.013 24 C 0.103 3.897 25 C 0.082 3.918 26 C -0.163 4.163 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.280 0.720 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.312 -7.716 6.259 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.023 4.023 4 O -0.246 6.246 5 C 0.076 3.924 6 C -0.226 4.226 7 C -0.099 4.099 8 C -0.158 4.158 9 C -0.064 4.064 10 C 0.019 3.981 11 N -0.683 5.683 12 C -0.432 4.432 13 H 0.098 0.902 14 C -0.139 4.139 15 N -0.502 5.502 16 Si 0.685 3.315 17 H -0.192 1.192 18 H -0.196 1.196 19 H -0.173 1.173 20 S 2.720 3.280 21 O -0.988 6.988 22 O -1.013 7.013 23 N -0.852 5.852 24 C -0.042 4.042 25 C -0.063 4.063 26 C -0.182 4.182 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.281 -8.409 6.186 20.189 hybrid contribution 0.862 0.208 -0.084 0.891 sum -16.419 -8.200 6.101 19.341 Atomic orbital electron populations 1.21673 0.92728 1.03135 1.02712 1.21506 0.97193 0.93965 1.03345 1.23113 0.77083 0.99871 1.02237 1.86036 1.22902 1.26850 1.88808 1.18891 0.91571 0.84907 0.97006 1.21440 1.00850 0.91699 1.08583 1.21214 0.93932 0.98092 0.96614 1.21129 0.94383 0.97985 1.02335 1.20115 0.96007 0.92993 0.97327 1.20551 0.89925 1.03674 0.83908 1.53204 1.78784 1.18874 1.17437 1.18331 0.93845 0.97873 1.33112 0.90207 1.26103 1.00228 0.93505 0.94024 1.69829 1.28146 1.30559 1.21655 0.86974 0.83800 0.79875 0.80893 1.19218 1.19635 1.17339 1.05923 0.75548 0.73584 0.72995 1.93492 1.57312 1.83588 1.64379 1.93379 1.86608 1.63479 1.57860 1.57802 1.47359 1.51054 1.28999 1.21405 1.02419 0.97944 0.82478 1.21776 0.94506 0.90122 0.99945 1.20389 0.92349 0.97826 1.07656 0.91777 0.91906 0.91061 0.91310 0.91246 0.91027 0.91286 0.83115 0.83246 0.85636 0.88490 0.90483 0.90985 0.92749 0.89714 0.92650 0.92006 0.89197 0.91778 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.71 6.30 30.59 0.19 -1.52 16 3 C 0.05 0.88 4.74 71.98 0.34 1.22 16 4 O -0.33 -8.49 10.14 -92.45 -0.94 -9.42 16 5 C 0.12 3.45 6.44 22.51 0.14 3.59 16 6 C -0.21 -4.98 9.04 22.37 0.20 -4.78 16 7 C -0.08 -2.04 10.04 22.25 0.22 -1.82 16 8 C -0.14 -4.37 9.70 22.28 0.22 -4.15 16 9 C -0.06 -2.19 5.43 -19.88 -0.11 -2.30 16 10 C 0.15 5.81 5.74 85.63 0.49 6.30 16 11 N -0.85 -39.84 1.96 -347.19 -0.68 -40.52 16 12 C -0.29 -14.99 9.50 84.03 0.80 -14.19 16 13 H 0.08 4.25 8.06 -2.91 -0.02 4.22 16 14 C 0.07 4.03 4.72 84.86 0.40 4.43 16 15 N -0.87 -48.92 13.97 21.65 0.30 -48.62 16 16 Si 0.86 44.48 25.66 68.60 1.76 46.24 16 17 H -0.27 -14.93 6.25 99.48 0.62 -14.31 16 18 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.25 -12.20 7.11 99.48 0.71 -11.49 16 20 S 2.70 130.60 5.30 -56.49 -0.30 130.30 16 21 O -1.00 -55.55 12.39 -128.00 -1.59 -57.14 16 22 O -1.03 -50.63 15.08 -128.00 -1.93 -52.56 16 23 N -1.01 -40.26 3.64 -562.70 -2.05 -42.31 16 24 C 0.10 3.74 10.35 127.77 1.32 5.07 16 25 C 0.08 2.67 9.78 127.77 1.25 3.92 16 26 C -0.16 -5.43 7.36 22.36 0.16 -5.27 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 33 H 0.07 1.06 7.65 -2.39 -0.02 1.04 16 34 H 0.15 2.63 6.30 -2.91 -0.02 2.61 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.10 3.64 8.02 -2.38 -0.02 3.62 16 38 H 0.08 3.06 6.82 -2.39 -0.02 3.05 16 39 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.52 8.11 -2.38 -0.02 2.50 16 42 H 0.05 2.36 7.86 -2.39 -0.02 2.34 16 43 H 0.06 1.98 4.98 -2.38 -0.01 1.97 16 44 H 0.09 2.34 8.07 -2.38 -0.02 2.32 16 45 H 0.06 2.18 7.01 -2.39 -0.02 2.16 16 46 H 0.12 4.15 6.95 -2.91 -0.02 4.13 16 Total: -1.00 -66.90 378.42 1.82 -65.09 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.88 Total: 19.11 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 6.35 Total: -10.16 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -2.43 Total: -131.46 kcal Atomic # 8 Polarization: -114.67 SS G_CDS: -4.45 Total: -119.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.76 Total: 46.24 kcal Atomic # 16 Polarization: 130.60 SS G_CDS: -0.30 Total: 130.30 kcal Total: -66.90 1.82 -65.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.624 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds