Wall clock time and date at job start Wed Apr 1 2020 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47342 * 2 1 4 4 C 1.50699 * 109.47033 * 119.99787 * 2 1 3 5 5 O 1.21278 * 119.99985 * 335.22149 * 4 2 1 6 6 N 1.34778 * 120.00146 * 155.22289 * 4 2 1 7 7 C 1.47124 * 121.05298 * 355.24256 * 6 4 2 8 8 C 1.53229 * 108.72301 * 127.74016 * 7 6 4 9 9 O 1.43101 * 109.34557 * 54.15685 * 8 7 6 10 10 C 1.42500 * 113.97318 * 300.04762 * 9 8 7 11 11 C 1.53440 * 113.78939 * 189.45452 * 10 9 8 12 12 N 1.47669 * 85.97890 * 91.24690 * 11 10 9 13 13 C 1.34778 * 134.45908 * 204.29243 * 12 11 10 14 14 O 1.21280 * 119.99847 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.99718 * 359.97438 * 13 12 11 16 16 S 1.81001 * 109.46920 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99886 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99992 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47351 * 59.99715 * 21 19 17 23 23 H 1.48499 * 109.47157 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46976 * 299.99623 * 21 19 17 25 25 C 1.47669 * 91.08795 * 24.29075 * 12 11 10 26 26 C 1.47335 * 121.05734 * 175.22628 * 6 4 2 27 27 H 1.09001 * 109.47345 * 300.00639 * 1 2 3 28 28 H 1.08996 * 109.47123 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47232 * 239.99877 * 2 1 3 31 31 H 1.08998 * 109.46734 * 304.98536 * 3 2 1 32 32 H 1.08997 * 109.47198 * 64.98217 * 3 2 1 33 33 H 1.08993 * 109.47200 * 184.98592 * 3 2 1 34 34 H 1.09005 * 109.59850 * 247.51208 * 7 6 4 35 35 H 1.09000 * 109.59508 * 7.96453 * 7 6 4 36 36 H 1.09002 * 109.48817 * 174.12172 * 8 7 6 37 37 H 1.08998 * 109.48943 * 294.16934 * 8 7 6 38 38 H 1.09012 * 113.79000 * 205.50992 * 11 10 9 39 39 H 1.08998 * 113.79629 * 336.97999 * 11 10 9 40 40 H 1.09004 * 109.46609 * 299.99862 * 15 13 12 41 41 H 1.09000 * 109.47099 * 59.99653 * 15 13 12 42 42 H 0.96995 * 120.00645 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.79483 * 221.45037 * 25 12 11 44 44 H 1.08997 * 113.90018 * 89.99106 * 25 12 11 45 45 H 1.09001 * 109.75122 * 108.75561 * 26 6 4 46 46 H 1.09000 * 109.78499 * 348.05111 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3353 -0.7739 2.2210 6 7 3.2560 -1.2751 1.2303 7 6 4.0789 -1.3027 0.0110 8 6 5.4614 -0.7284 0.3375 9 8 6.0184 -1.4365 1.4493 10 6 5.2356 -1.3569 2.6374 11 6 5.9389 -1.9171 3.8807 12 7 6.4284 -0.5407 4.0962 13 6 7.4855 -0.0043 4.7376 14 8 7.6408 1.1984 4.7500 15 6 8.4743 -0.8991 5.4394 16 16 9.7688 0.1118 6.2000 17 6 10.7561 -1.1527 6.9286 18 1 10.4721 -2.1890 6.8206 19 6 11.8994 -0.8169 7.6403 20 7 12.2463 0.4461 7.7707 21 14 12.9465 -2.1576 8.4121 22 1 13.4399 -3.0725 7.3516 23 1 14.1029 -1.5417 9.1112 24 1 12.1295 -2.9244 9.3866 25 6 5.2957 0.0126 3.3271 26 6 3.8124 -1.8839 2.4511 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6056 1.9814 -0.8420 32 1 1.7514 1.9300 0.9312 33 1 3.1263 1.4438 -0.0893 34 1 4.1828 -2.3306 -0.3368 35 1 3.6056 -0.6987 -0.7632 36 1 6.1147 -0.8386 -0.5282 37 1 5.3663 0.3278 0.5892 38 1 5.2539 -2.2662 4.6535 39 1 6.7280 -2.6341 3.6540 40 1 7.9611 -1.4727 6.2113 41 1 8.9229 -1.5816 4.7175 42 1 13.0451 0.6808 8.2684 43 1 5.5738 0.8289 2.6604 44 1 4.4186 0.2385 3.9335 45 1 3.8324 -2.9686 2.3456 46 1 3.2024 -1.6088 3.3116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068305536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:19 Heat of formation + Delta-G solvation = -68.497225 kcal Electronic energy + Delta-G solvation = -27996.001775 eV Core-core repulsion = 24013.844457 eV Total energy + Delta-G solvation = -3982.157318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48847 -40.04596 -38.42838 -36.74228 -35.20290 -34.92572 -32.41916 -31.53808 -29.82375 -28.48776 -27.65921 -26.70619 -26.23213 -25.39099 -23.99799 -23.19700 -20.50566 -19.22258 -19.11833 -18.01149 -17.72032 -17.16572 -16.69283 -16.29171 -15.84973 -15.73224 -15.42198 -15.03723 -14.79368 -14.78145 -14.63700 -14.35467 -13.95429 -13.80820 -13.46657 -13.06265 -12.98229 -12.78102 -12.70618 -12.59286 -12.49095 -12.27186 -12.13070 -11.86807 -11.69182 -11.60920 -11.45548 -11.06992 -11.03182 -11.02784 -10.76267 -10.42101 -10.07235 -9.82012 -9.44688 -9.05014 -9.00338 -8.60916 -8.23140 -6.49335 -6.20275 -3.91156 2.16960 2.35606 2.69212 3.00950 3.10210 3.24461 3.24556 3.29626 3.54688 3.88993 3.95714 4.16610 4.21403 4.30146 4.33136 4.47557 4.48975 4.63590 4.68725 4.80175 4.89453 5.05172 5.12832 5.14453 5.14620 5.17553 5.24256 5.25303 5.28075 5.30331 5.35039 5.43033 5.46124 5.46582 5.56481 5.68440 5.76223 5.87975 5.91284 5.98577 6.16055 6.71930 6.84607 7.60420 7.70209 7.77841 8.36282 8.54128 9.24634 10.87141 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.002112 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.372511 B =13254.723881 C =13426.758701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.522 3.478 5 O -0.534 6.534 6 N -0.617 5.617 7 C 0.070 3.930 8 C 0.044 3.956 9 O -0.340 6.340 10 C 0.066 3.934 11 C 0.123 3.877 12 N -0.644 5.644 13 C 0.560 3.440 14 O -0.515 6.515 15 C -0.144 4.144 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.091 3.909 26 C 0.100 3.900 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.650 -5.538 -20.589 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.311 3.689 5 O -0.410 6.410 6 N -0.351 5.351 7 C -0.053 4.053 8 C -0.033 4.033 9 O -0.257 6.257 10 C 0.024 3.976 11 C -0.001 4.001 12 N -0.383 5.383 13 C 0.349 3.651 14 O -0.388 6.388 15 C -0.295 4.295 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.032 4.032 26 C -0.023 4.023 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.292 -3.637 -19.847 30.068 hybrid contribution 0.394 -2.179 0.381 2.247 sum -21.898 -5.817 -19.466 29.871 Atomic orbital electron populations 1.21660 0.92253 1.02636 1.02760 1.21344 0.98471 0.97595 0.96259 1.21774 1.01314 0.93608 1.03431 1.20764 0.80296 0.77800 0.90064 1.90709 1.55433 1.59205 1.35618 1.48204 1.16922 1.58623 1.11384 1.22536 0.92210 1.03210 0.87379 1.23043 0.93948 0.96178 0.90163 1.88022 1.46574 1.73038 1.18114 1.23125 0.90743 0.96806 0.86932 1.23103 0.97734 0.86939 0.92301 1.49864 1.24272 1.08454 1.55681 1.20030 0.79847 0.88619 0.76577 1.90710 1.73982 1.15121 1.59022 1.23473 1.00629 1.02944 1.02437 1.85399 1.22058 1.09992 1.65944 1.22815 1.12190 0.94051 1.39260 0.90951 1.24995 0.96717 0.96230 0.95656 1.70006 1.24929 1.16212 1.39159 0.86214 0.79209 0.80818 0.79198 1.19926 1.20814 1.19927 1.23567 0.89566 0.97017 0.93092 1.22126 0.92686 0.98473 0.89037 0.91320 0.91757 0.92362 0.88957 0.91023 0.91654 0.92096 0.89972 0.88261 0.86964 0.92156 0.87931 0.88427 0.89298 0.89187 0.92126 0.89921 0.89169 0.89889 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.72 37.16 0.32 -0.48 16 2 C -0.12 -0.66 2.43 -91.77 -0.22 -0.88 16 3 C -0.14 -0.73 9.09 37.16 0.34 -0.39 16 4 C 0.52 4.60 6.82 -10.99 -0.07 4.53 16 5 O -0.53 -6.74 15.62 5.56 0.09 -6.65 16 6 N -0.62 -4.62 3.03 -172.43 -0.52 -5.14 16 7 C 0.07 0.34 6.42 -3.58 -0.02 0.32 16 8 C 0.04 0.29 6.88 37.28 0.26 0.55 16 9 O -0.34 -3.47 10.52 -35.23 -0.37 -3.84 16 10 C 0.07 0.63 1.21 -90.30 -0.11 0.52 16 11 C 0.12 1.28 8.01 -3.18 -0.03 1.26 16 12 N -0.64 -9.74 3.61 -180.77 -0.65 -10.39 16 13 C 0.56 11.35 8.07 -10.98 -0.09 11.26 16 14 O -0.51 -12.52 16.59 5.56 0.09 -12.43 16 15 C -0.14 -3.07 5.90 36.01 0.21 -2.85 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.09 1.11 7.98 -3.17 -0.03 1.08 16 26 C 0.10 0.80 5.76 -3.64 -0.02 0.78 16 27 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.33 6.34 -51.93 -0.33 0.00 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.28 7.84 -51.93 -0.41 -0.13 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.27 5.22 -51.93 -0.27 0.00 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 38 H 0.10 0.82 8.09 -51.92 -0.42 0.40 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.08 1.07 7.28 -51.93 -0.38 0.69 16 44 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 0.96 6.95 -51.93 -0.36 0.60 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -38.27 388.57 -8.41 -46.67 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.13 Total: -3.61 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.74 Total: 2.57 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.44 Total: -41.23 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.19 Total: -22.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.27 -8.41 -46.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068305536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.824 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds