Wall clock time and date at job start Wed Apr 1 2020 01:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47540 * 2 1 4 4 O 1.45207 * 109.47069 * 239.99851 * 2 1 3 5 5 C 1.34781 * 116.99652 * 90.00204 * 4 2 1 6 6 O 1.21518 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.47315 * 119.99398 * 179.97438 * 5 4 2 8 8 C 1.38928 * 120.46868 * 354.21389 * 7 5 4 9 9 C 1.38880 * 120.66850 * 179.71950 * 8 7 5 10 10 C 1.36386 * 121.27452 * 0.56224 * 9 8 7 11 11 C 1.40401 * 120.00096 * 359.72219 * 10 9 8 12 12 C 1.40463 * 121.94590 * 180.02562 * 11 10 9 13 13 N 1.31282 * 119.88189 * 180.02562 * 12 11 10 14 14 C 1.32548 * 122.73188 * 359.97438 * 13 12 11 15 15 C 1.36343 * 121.81264 * 359.97438 * 14 13 12 16 16 C 1.40265 * 118.70872 * 0.02680 * 15 14 13 17 17 C 1.50699 * 109.47251 * 119.99756 * 2 1 3 18 18 O 1.21280 * 119.99768 * 114.99776 * 17 2 1 19 19 N 1.34775 * 120.00150 * 295.00308 * 17 2 1 20 20 C 1.46499 * 120.00060 * 359.97438 * 19 17 2 21 21 C 1.46498 * 120.00163 * 179.97438 * 19 17 2 22 22 C 1.50705 * 109.47180 * 89.99815 * 21 19 17 23 23 H 1.08001 * 119.99731 * 359.97438 * 22 21 19 24 24 C 1.37877 * 120.00238 * 180.02562 * 22 21 19 25 25 N 1.31517 * 120.00003 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99727 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47256 * 90.00236 * 26 24 22 28 28 H 1.48503 * 109.46787 * 209.99945 * 26 24 22 29 29 H 1.48501 * 109.47432 * 329.99441 * 26 24 22 30 30 H 1.09004 * 109.46948 * 59.99817 * 1 2 3 31 31 H 1.09002 * 109.47433 * 300.00326 * 1 2 3 32 32 H 1.09002 * 109.47540 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.66176 * 359.97111 * 8 7 5 34 34 H 1.07996 * 119.35546 * 180.25662 * 9 8 7 35 35 H 1.08006 * 119.99574 * 179.69864 * 10 9 8 36 36 H 1.07999 * 120.06111 * 0.02562 * 12 11 10 37 37 H 1.07991 * 119.09428 * 179.97438 * 14 13 12 38 38 H 1.08000 * 120.64618 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47163 * 89.99874 * 20 19 17 40 40 H 1.08989 * 109.47209 * 210.00336 * 20 19 17 41 41 H 1.09000 * 109.46759 * 330.00397 * 20 19 17 42 42 H 1.08996 * 109.47632 * 209.99801 * 21 19 17 43 43 H 1.09002 * 109.47451 * 329.99978 * 21 19 17 44 44 H 0.96997 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0671 -2.2856 6 8 1.9969 1.2616 -2.2550 7 6 2.7088 -0.5597 -3.5251 8 6 3.0784 -1.8988 -3.5389 9 6 3.5362 -2.4954 -4.7065 10 6 3.6478 -1.7872 -5.8668 11 6 3.2911 -0.4296 -5.8976 12 6 3.3892 0.3381 -7.0698 13 7 3.0450 1.6049 -7.0527 14 6 2.5988 2.2117 -5.9620 15 6 2.4668 1.5525 -4.7758 16 6 2.8156 0.1952 -4.7169 17 6 2.0323 -0.7103 1.2305 18 8 2.6529 -1.7466 1.1215 19 7 1.7918 -0.1941 2.4520 20 6 1.0426 1.0579 2.5836 21 6 2.2797 -0.8850 3.6482 22 6 3.6614 -0.3877 3.9871 23 1 4.1294 0.3672 3.3726 24 6 4.3284 -0.8971 5.0810 25 7 5.5344 -0.4634 5.3765 26 14 3.5197 -2.2042 6.1425 27 1 3.8635 -3.5502 5.6181 28 1 4.0068 -2.0781 7.5398 29 1 2.0460 -2.0232 6.1139 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0050 -2.4829 -2.6334 34 1 3.8139 -3.5390 -4.6942 35 1 4.0109 -2.2707 -6.7617 36 1 3.7472 -0.1129 -7.9835 37 1 2.3325 3.2569 -6.0143 38 1 2.1009 2.0654 -3.8987 39 1 -0.0215 0.8373 2.6678 40 1 1.3754 1.5884 3.4756 41 1 1.2164 1.6793 1.7052 42 1 1.6072 -0.6859 4.4825 43 1 2.3161 -1.9578 3.4588 44 1 6.0037 -0.8221 6.1458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750364708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:52 Heat of formation + Delta-G solvation = -44.615668 kcal Electronic energy + Delta-G solvation = -29027.797962 eV Core-core repulsion = 24911.232275 eV Total energy + Delta-G solvation = -4116.565687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45142 -40.41896 -39.06848 -37.56178 -36.58535 -35.09845 -33.30987 -32.86500 -31.91569 -31.40888 -30.14460 -28.35973 -26.36925 -25.41567 -24.55282 -23.85945 -23.65154 -22.15799 -20.96524 -18.99466 -18.69143 -18.03024 -17.15759 -17.01226 -16.89162 -16.52077 -16.23244 -15.98838 -15.43818 -15.11861 -14.86312 -14.52218 -14.32583 -14.12134 -13.88721 -13.56384 -13.52415 -13.15267 -12.86036 -12.49889 -12.44668 -12.36220 -12.31700 -12.24922 -12.05367 -11.89914 -11.61263 -11.45620 -11.02012 -10.81165 -10.58298 -10.54115 -10.49908 -10.20286 -9.66392 -9.60104 -9.47009 -9.09338 -8.63889 -8.48148 -7.85612 -6.13330 -4.13158 -0.28691 0.55279 1.26385 2.22280 2.28059 2.86728 3.11072 3.25563 3.31392 3.33154 3.67539 3.76242 4.11884 4.21527 4.34145 4.34904 4.39058 4.54177 4.58575 4.67549 4.74441 4.85788 4.97615 5.06044 5.17842 5.19769 5.39468 5.42389 5.51481 5.53795 5.55000 5.60522 5.64156 5.72677 5.87033 5.89404 6.02781 6.11724 6.16533 6.35841 6.48793 6.59765 6.83941 7.17396 7.53283 7.56653 7.67364 8.04236 8.39830 8.75222 8.89968 9.45771 10.99969 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002468 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.431756 B =11342.416785 C =11858.547087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.319 6.319 5 C 0.514 3.486 6 O -0.504 6.504 7 C -0.126 4.126 8 C -0.018 4.018 9 C -0.137 4.137 10 C -0.047 4.047 11 C -0.126 4.126 12 C 0.147 3.853 13 N -0.490 5.490 14 C 0.080 3.920 15 C -0.163 4.163 16 C 0.018 3.982 17 C 0.512 3.488 18 O -0.519 6.519 19 N -0.590 5.590 20 C 0.075 3.925 21 C 0.217 3.783 22 C -0.533 4.533 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.265 1.265 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 0.187 -22.224 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.127 0.873 4 O -0.234 6.234 5 C 0.360 3.640 6 O -0.394 6.394 7 C -0.127 4.127 8 C -0.037 4.037 9 C -0.155 4.155 10 C -0.067 4.067 11 C -0.129 4.129 12 C -0.025 4.025 13 N -0.198 5.198 14 C -0.063 4.063 15 C -0.182 4.182 16 C 0.013 3.987 17 C 0.296 3.704 18 O -0.394 6.394 19 N -0.324 5.324 20 C -0.068 4.068 21 C 0.097 3.903 22 C -0.571 4.571 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.704 3.296 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.595 0.581 -22.754 24.701 hybrid contribution -0.262 -0.915 1.552 1.821 sum -9.858 -0.334 -21.201 23.383 Atomic orbital electron populations 1.22294 0.92147 1.04101 1.04231 1.22637 0.95780 0.97791 0.82427 0.87267 1.86652 1.76577 1.40854 1.19354 1.20939 0.74214 0.84980 0.83829 1.90642 1.49245 1.15804 1.83750 1.18907 1.08157 0.94903 0.90750 1.21904 0.89422 0.93061 0.99337 1.20976 1.01014 1.01248 0.92254 1.21296 0.94419 0.92178 0.98818 1.18978 1.03458 0.95638 0.94782 1.23209 0.93710 0.89297 0.96257 1.67426 1.10650 1.11162 1.30587 1.22368 0.95604 1.00405 0.87881 1.22888 0.99810 0.93973 1.01488 1.17858 0.95375 0.93948 0.91509 1.19744 0.80955 0.85907 0.83785 1.90701 1.39446 1.23509 1.85747 1.47727 1.54259 1.24063 1.06315 1.21885 0.95176 0.86445 1.03341 1.19729 0.95579 0.93671 0.81302 1.21310 0.99117 1.24331 1.12351 0.90732 1.24860 0.94662 0.96286 0.97166 1.69897 1.12240 1.43215 1.28022 0.86840 0.80100 0.82780 0.79899 1.19842 1.20996 1.19022 0.91121 0.89152 0.90921 0.83115 0.84245 0.84161 0.81726 0.82694 0.80946 0.92953 0.90004 0.91985 0.94786 0.94349 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.28 37.15 0.34 -1.70 16 2 C 0.07 1.14 2.17 -27.89 -0.06 1.08 16 3 H 0.11 1.68 6.15 -51.93 -0.32 1.36 16 4 O -0.32 -5.17 8.69 -47.38 -0.41 -5.58 16 5 C 0.51 7.61 7.83 34.42 0.27 7.88 16 6 O -0.50 -7.76 12.75 -19.28 -0.25 -8.00 16 7 C -0.13 -1.61 5.90 -104.72 -0.62 -2.22 16 8 C -0.02 -0.19 9.60 -39.09 -0.38 -0.57 16 9 C -0.14 -1.08 9.92 -40.01 -0.40 -1.47 16 10 C -0.05 -0.34 9.78 -39.44 -0.39 -0.73 16 11 C -0.13 -1.23 5.74 -106.88 -0.61 -1.84 16 12 C 0.15 1.30 11.05 -16.95 -0.19 1.12 16 13 N -0.49 -5.36 10.30 -13.11 -0.14 -5.49 16 14 C 0.08 0.86 11.07 -17.93 -0.20 0.66 16 15 C -0.16 -1.95 9.27 -39.50 -0.37 -2.31 16 16 C 0.02 0.22 5.77 -106.54 -0.61 -0.39 16 17 C 0.51 10.43 7.10 -10.99 -0.08 10.35 16 18 O -0.52 -12.77 16.09 -14.05 -0.23 -13.00 16 19 N -0.59 -11.84 2.86 -182.96 -0.52 -12.36 16 20 C 0.08 1.09 8.92 59.85 0.53 1.63 16 21 C 0.22 5.19 4.23 -5.19 -0.02 5.16 16 22 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 23 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 25 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 26 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.93 5.12 -51.93 -0.27 0.67 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.15 1.62 7.61 -52.48 -0.40 1.22 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.17 2.18 5.06 -52.49 -0.27 1.92 16 39 H 0.05 0.60 7.02 -51.93 -0.36 0.24 16 40 H 0.08 1.23 8.07 -51.94 -0.42 0.81 16 41 H 0.06 0.77 6.08 -51.93 -0.32 0.46 16 42 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -36.44 369.87 -8.27 -44.71 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.20 Total: 1.10 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.21 Total: 3.19 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.12 Total: -44.52 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.88 Total: -26.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.44 -8.27 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750364708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.095 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds